Wall clock time and date at job start Tue Mar 31 2020 09:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99824 * 3 2 1 5 5 H 1.48499 * 109.47180 * 29.99898 * 3 2 1 6 6 H 1.48496 * 109.46978 * 149.99995 * 3 2 1 7 7 C 1.39909 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00352 * 167.27290 * 7 2 1 9 9 C 1.41298 * 119.99654 * 347.27075 * 7 2 1 10 10 C 1.40624 * 120.22629 * 335.79258 * 9 7 2 11 11 C 1.38195 * 119.70075 * 180.23210 * 10 9 7 12 12 N 1.39795 * 119.91230 * 179.77444 * 11 10 9 13 13 C 1.39542 * 119.99974 * 325.63128 * 12 11 10 14 14 C 1.40194 * 120.20770 * 330.47443 * 13 12 11 15 15 N 1.30927 * 121.58704 * 179.97438 * 14 13 12 16 16 C 1.33688 * 121.65913 * 0.02562 * 15 14 13 17 17 N 1.33828 * 120.71960 * 179.97438 * 16 15 14 18 18 C 1.31357 * 119.83839 * 180.02562 * 17 16 15 19 19 C 1.39608 * 120.80726 * 0.02562 * 18 17 16 20 20 N 1.31398 * 120.57269 * 0.27492 * 19 18 17 21 21 C 1.33664 * 119.67286 * 359.44824 * 20 19 18 22 22 C 1.38175 * 120.20554 * 150.45940 * 13 12 11 23 23 C 1.39430 * 120.16990 * 359.49881 * 11 10 9 24 24 C 1.38352 * 120.46277 * 0.25178 * 23 11 10 25 25 C 1.38017 * 120.29361 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.08973 * 179.97438 * 25 24 23 27 27 H 0.97005 * 120.00494 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.15273 * 0.02562 * 10 9 7 29 29 H 0.97003 * 120.00316 * 145.62852 * 12 11 10 30 30 H 1.08000 * 119.20166 * 359.96194 * 14 13 12 31 31 H 1.08007 * 119.59385 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.70808 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.96631 * 0.04578 * 22 13 12 34 34 H 1.07998 * 119.76602 * 180.28362 * 23 11 10 35 35 H 1.07999 * 119.85358 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4403 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0682 -1.2230 -0.2066 9 6 1.3277 -2.4204 0.2686 10 6 0.1339 -2.4104 1.0117 11 6 -0.5202 -3.5995 1.2727 12 7 -1.7047 -3.5952 2.0150 13 6 -1.8774 -2.6731 3.0479 14 6 -0.7682 -2.1955 3.7600 15 7 -0.8991 -1.3298 4.7335 16 6 -2.0961 -0.8587 5.0973 17 7 -2.2082 0.0255 6.0956 18 6 -3.3931 0.4767 6.4391 19 6 -4.5427 0.0448 5.7752 20 7 -4.4610 -0.8271 4.7956 21 6 -3.2653 -1.2958 4.4249 22 6 -3.1428 -2.2247 3.3751 23 6 -0.0047 -4.8028 0.7925 24 6 1.1665 -4.8200 0.0562 25 6 1.8384 -3.6444 -0.2108 26 9 2.9820 -3.6660 -0.9297 27 1 -0.4851 0.8400 0.0004 28 1 -0.2683 -1.4781 1.3797 29 1 -2.4066 -4.2333 1.8121 30 1 0.2179 -2.5504 3.4993 31 1 -3.4789 1.1906 7.2451 32 1 -5.5080 0.4271 6.0725 33 1 -4.0128 -2.5781 2.8416 34 1 -0.5236 -5.7277 0.9964 35 1 1.5572 -5.7577 -0.3105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213232117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:01 Heat of formation + Delta-G solvation = 63.178367 kcal Electronic energy + Delta-G solvation = -24145.108209 eV Core-core repulsion = 20443.580558 eV Total energy + Delta-G solvation = -3701.527651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.32876 -41.43457 -39.12060 -37.49513 -35.39427 -34.53818 -33.68066 -31.42785 -30.28658 -29.73389 -27.55549 -25.82806 -25.33963 -24.03083 -22.74360 -21.56626 -20.78039 -19.29510 -18.20870 -17.92986 -17.02985 -16.29039 -16.01907 -15.69899 -15.32833 -15.09061 -14.94359 -14.62998 -14.35457 -14.09223 -13.28769 -13.16904 -12.99939 -12.72438 -12.54091 -12.22867 -11.97150 -11.77805 -11.65460 -11.58893 -11.31783 -11.10951 -10.64921 -10.54926 -10.35483 -10.12210 -9.72703 -9.42202 -9.09532 -8.63927 -8.26201 -7.78511 -6.98713 -6.70594 -4.63279 0.20390 0.58065 2.02827 2.46094 2.55732 2.91454 2.99950 3.03137 3.08068 3.45016 3.79819 3.80627 4.15847 4.20775 4.28137 4.36213 4.80745 4.81488 4.97913 5.18641 5.27004 5.45861 5.55830 5.75931 5.92330 5.97345 6.06975 6.22134 6.39444 6.70252 6.71085 6.83603 6.97376 7.11567 7.30091 7.39581 7.59505 7.60974 7.79331 7.83726 8.02837 8.14966 8.37304 8.55884 8.61430 9.93778 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.004886 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.837965 B = 5728.699083 C = 7213.718896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.180 4.180 11 C 0.152 3.848 12 N -0.665 5.665 13 C 0.184 3.816 14 C 0.157 3.843 15 N -0.432 5.432 16 C 0.217 3.783 17 N -0.405 5.405 18 C 0.069 3.931 19 C 0.075 3.925 20 N -0.429 5.429 21 C 0.075 3.925 22 C -0.137 4.137 23 C -0.246 4.246 24 C -0.099 4.099 25 C -0.038 4.038 26 F -0.162 7.162 27 H 0.284 0.716 28 H 0.140 0.860 29 H 0.406 0.594 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 -1.022 7.687 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.105 0.895 9 C 0.097 3.903 10 C -0.202 4.202 11 C 0.058 3.942 12 N -0.286 5.286 13 C 0.075 3.925 14 C -0.025 4.025 15 N -0.141 5.141 16 C -0.023 4.023 17 N -0.120 5.120 18 C -0.110 4.110 19 C -0.101 4.101 20 N -0.144 5.144 21 C -0.053 4.053 22 C -0.170 4.170 23 C -0.268 4.268 24 C -0.119 4.119 25 C -0.058 4.058 26 F -0.141 7.141 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.243 0.757 30 H 0.195 0.805 31 H 0.191 0.809 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.432 -0.585 8.000 10.936 hybrid contribution -0.674 0.264 -0.796 1.076 sum -8.106 -0.322 7.205 10.850 Atomic orbital electron populations 1.69752 1.07618 1.29692 1.33775 1.25959 0.94877 1.01747 0.91937 0.86189 0.80704 0.79889 0.79491 1.19146 1.19875 1.18014 1.19589 0.96959 0.90227 1.40126 0.89550 1.17407 0.91905 0.91156 0.89818 1.21214 0.99315 0.95680 1.03974 1.17619 0.86949 0.94396 0.95201 1.42007 1.18806 1.35335 1.32493 1.18842 0.93872 0.91014 0.88732 1.23400 0.99585 0.91347 0.88202 1.67495 1.23705 1.08943 1.13908 1.19887 0.89536 0.97518 0.95371 1.68127 1.26364 1.06591 1.10905 1.23939 0.88014 0.99102 0.99924 1.24018 1.00446 0.93570 0.92057 1.68590 1.24989 1.08623 1.12208 1.19924 0.90443 0.97859 0.97038 1.20805 0.97166 0.99311 0.99680 1.19837 1.00060 0.94915 1.11974 1.20290 0.95769 0.95781 1.00066 1.17861 0.88262 0.94917 1.04771 1.91281 1.48657 1.97382 1.76801 0.90491 0.84252 0.75742 0.80456 0.80866 0.80951 0.83553 0.88039 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.35 10.64 55.55 0.59 -18.76 16 2 C 0.07 1.79 5.25 -17.34 -0.09 1.69 16 3 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.44 -11.22 8.80 -37.79 -0.33 -11.55 16 8 H 0.09 2.17 7.70 -52.49 -0.40 1.77 16 9 C 0.10 2.53 5.60 -106.78 -0.60 1.93 16 10 C -0.18 -4.15 6.66 -38.70 -0.26 -4.41 16 11 C 0.15 3.00 5.78 -83.80 -0.48 2.52 16 12 N -0.67 -10.80 5.44 -8.35 -0.05 -10.84 16 13 C 0.18 3.09 5.91 -83.64 -0.49 2.60 16 14 C 0.16 2.87 9.27 -17.20 -0.16 2.71 16 15 N -0.43 -8.40 10.40 -12.37 -0.13 -8.53 16 16 C 0.22 3.99 7.60 -157.69 -1.20 2.79 16 17 N -0.41 -6.76 10.55 -12.43 -0.13 -6.89 16 18 C 0.07 0.81 11.20 -17.24 -0.19 0.62 16 19 C 0.07 0.83 11.22 -17.23 -0.19 0.64 16 20 N -0.43 -6.35 10.47 -10.79 -0.11 -6.46 16 21 C 0.07 1.26 6.59 -84.78 -0.56 0.70 16 22 C -0.14 -2.18 10.05 -38.67 -0.39 -2.56 16 23 C -0.25 -4.67 9.96 -39.10 -0.39 -5.06 16 24 C -0.10 -2.04 10.00 -39.62 -0.40 -2.43 16 25 C -0.04 -0.89 7.31 -38.61 -0.28 -1.17 16 26 F -0.16 -3.87 16.71 2.25 0.04 -3.83 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.14 3.42 4.80 -52.49 -0.25 3.17 16 29 H 0.41 5.36 8.92 -40.82 -0.36 5.00 16 30 H 0.18 3.27 6.72 -52.49 -0.35 2.92 16 31 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -29.33 313.02 -8.74 -38.07 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.62 Total: 10.05 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -6.02 Total: -10.99 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.17 Total: -51.48 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.33 -8.74 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213232117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.249 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds