Wall clock time and date at job start Tue Mar 31 2020 09:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99824 * 3 2 1 5 5 H 1.48499 * 109.47180 * 29.99898 * 3 2 1 6 6 H 1.48496 * 109.46978 * 149.99995 * 3 2 1 7 7 C 1.39909 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00352 * 167.27290 * 7 2 1 9 9 C 1.41298 * 119.99654 * 347.27075 * 7 2 1 10 10 C 1.40624 * 120.22629 * 335.79258 * 9 7 2 11 11 C 1.38195 * 119.70075 * 180.23210 * 10 9 7 12 12 N 1.39795 * 119.91230 * 179.77444 * 11 10 9 13 13 C 1.39542 * 119.99974 * 325.63128 * 12 11 10 14 14 C 1.40194 * 120.20770 * 330.47443 * 13 12 11 15 15 N 1.30927 * 121.58704 * 179.97438 * 14 13 12 16 16 C 1.33688 * 121.65913 * 0.02562 * 15 14 13 17 17 N 1.33828 * 120.71960 * 179.97438 * 16 15 14 18 18 C 1.31357 * 119.83839 * 180.02562 * 17 16 15 19 19 C 1.39608 * 120.80726 * 0.02562 * 18 17 16 20 20 N 1.31398 * 120.57269 * 0.27492 * 19 18 17 21 21 C 1.33664 * 119.67286 * 359.44824 * 20 19 18 22 22 C 1.38175 * 120.20554 * 150.45940 * 13 12 11 23 23 C 1.39430 * 120.16990 * 359.49881 * 11 10 9 24 24 C 1.38352 * 120.46277 * 0.25178 * 23 11 10 25 25 C 1.38017 * 120.29361 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.08973 * 179.97438 * 25 24 23 27 27 H 0.97005 * 120.00494 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.15273 * 0.02562 * 10 9 7 29 29 H 0.97003 * 120.00316 * 145.62852 * 12 11 10 30 30 H 1.08000 * 119.20166 * 359.96194 * 14 13 12 31 31 H 1.08007 * 119.59385 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.70808 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.96631 * 0.04578 * 22 13 12 34 34 H 1.07998 * 119.76602 * 180.28362 * 23 11 10 35 35 H 1.07999 * 119.85358 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4403 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0682 -1.2230 -0.2066 9 6 1.3277 -2.4204 0.2686 10 6 0.1339 -2.4104 1.0117 11 6 -0.5202 -3.5995 1.2727 12 7 -1.7047 -3.5952 2.0150 13 6 -1.8774 -2.6731 3.0479 14 6 -0.7682 -2.1955 3.7600 15 7 -0.8991 -1.3298 4.7335 16 6 -2.0961 -0.8587 5.0973 17 7 -2.2082 0.0255 6.0956 18 6 -3.3931 0.4767 6.4391 19 6 -4.5427 0.0448 5.7752 20 7 -4.4610 -0.8271 4.7956 21 6 -3.2653 -1.2958 4.4249 22 6 -3.1428 -2.2247 3.3751 23 6 -0.0047 -4.8028 0.7925 24 6 1.1665 -4.8200 0.0562 25 6 1.8384 -3.6444 -0.2108 26 9 2.9820 -3.6660 -0.9297 27 1 -0.4851 0.8400 0.0004 28 1 -0.2683 -1.4781 1.3797 29 1 -2.4066 -4.2333 1.8121 30 1 0.2179 -2.5504 3.4993 31 1 -3.4789 1.1906 7.2451 32 1 -5.5080 0.4271 6.0725 33 1 -4.0128 -2.5781 2.8416 34 1 -0.5236 -5.7277 0.9964 35 1 1.5572 -5.7577 -0.3105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213232117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:00 Heat of formation + Delta-G solvation = 44.507637 kcal Electronic energy + Delta-G solvation = -24145.917833 eV Core-core repulsion = 20443.580558 eV Total energy + Delta-G solvation = -3702.337275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.15383 -42.61662 -40.48978 -38.96094 -36.82133 -35.86189 -35.27007 -32.67092 -31.86524 -31.19505 -29.09199 -27.40341 -26.69178 -25.27722 -24.01748 -23.22679 -22.36277 -20.53076 -19.71151 -19.26428 -18.41459 -17.98778 -17.46855 -17.21062 -16.68785 -16.46734 -16.21014 -16.05833 -15.90691 -15.61388 -14.87353 -14.58755 -14.35084 -14.08694 -13.95779 -13.74264 -13.57863 -13.44099 -13.06376 -12.86068 -12.75112 -12.71211 -12.31543 -12.09676 -11.88785 -11.57474 -11.39049 -11.10551 -10.29484 -9.80298 -9.73322 -9.53188 -8.74920 -8.21497 -6.49787 -0.94766 -0.59395 0.69086 0.86733 0.93640 1.31071 1.40696 1.45300 1.73137 2.11901 2.17099 2.59987 2.64626 2.99124 3.06493 3.21351 3.48584 3.54410 3.75221 3.91902 4.06876 4.12385 4.31951 4.39167 4.47131 4.64132 4.73770 4.83350 4.95590 5.05864 5.18130 5.21220 5.41402 5.66453 5.73141 5.94230 6.00297 6.01870 6.22624 6.44439 6.50239 6.74375 6.78428 6.85833 6.94266 8.17349 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.004886 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.837965 B = 5728.699083 C = 7213.718896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.194 4.194 11 C 0.166 3.834 12 N -0.656 5.656 13 C 0.171 3.829 14 C 0.137 3.863 15 N -0.462 5.462 16 C 0.190 3.810 17 N -0.449 5.449 18 C 0.093 3.907 19 C 0.097 3.903 20 N -0.445 5.445 21 C 0.054 3.946 22 C -0.118 4.118 23 C -0.227 4.227 24 C -0.095 4.095 25 C -0.071 4.071 26 F -0.171 7.171 27 H 0.286 0.714 28 H 0.121 0.879 29 H 0.424 0.576 30 H 0.162 0.838 31 H 0.227 0.773 32 H 0.232 0.768 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -0.951 9.314 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.091 0.909 9 C 0.069 3.931 10 C -0.217 4.217 11 C 0.071 3.929 12 N -0.281 5.281 13 C 0.064 3.936 14 C -0.043 4.043 15 N -0.171 5.171 16 C -0.049 4.049 17 N -0.164 5.164 18 C -0.087 4.087 19 C -0.080 4.080 20 N -0.160 5.160 21 C -0.071 4.071 22 C -0.150 4.150 23 C -0.248 4.248 24 C -0.115 4.115 25 C -0.092 4.092 26 F -0.151 7.151 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.263 0.737 30 H 0.179 0.821 31 H 0.243 0.757 32 H 0.248 0.752 33 H 0.188 0.812 34 H 0.162 0.838 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.613 -0.582 9.595 14.319 hybrid contribution 0.019 0.272 -0.997 1.034 sum -10.594 -0.310 8.598 13.648 Atomic orbital electron populations 1.69811 1.08539 1.30293 1.35156 1.26611 0.95571 1.04154 0.91258 0.85310 0.79302 0.76231 0.79778 1.18159 1.19334 1.18229 1.19688 0.96649 0.91773 1.43133 0.90939 1.17734 0.93004 0.91750 0.90610 1.21066 0.99489 0.96419 1.04693 1.17628 0.87450 0.93640 0.94213 1.41736 1.18203 1.35962 1.32152 1.18715 0.93894 0.91829 0.89153 1.23157 0.99600 0.92378 0.89132 1.67365 1.25359 1.09738 1.14680 1.20101 0.89603 0.98626 0.96595 1.68173 1.29090 1.07639 1.11517 1.24991 0.86679 0.97523 0.99519 1.25061 1.02661 0.90814 0.89485 1.68694 1.23550 1.10017 1.13781 1.20009 0.90927 0.98600 0.97532 1.21086 0.97269 0.97891 0.98779 1.20310 0.99027 0.96036 1.09437 1.20660 0.95665 0.95817 0.99317 1.18215 0.88879 0.95907 1.06198 1.91239 1.49222 1.97460 1.77153 0.90293 0.86104 0.73660 0.82107 0.75673 0.75189 0.81189 0.83827 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.09 10.64 21.82 0.23 -41.86 16 2 C 0.04 2.02 5.25 85.24 0.45 2.47 16 3 Si 0.97 39.63 29.58 68.60 2.03 41.65 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.48 -26.32 8.80 23.43 0.21 -26.11 16 8 H 0.07 3.96 7.70 -2.91 -0.02 3.93 16 9 C 0.07 3.83 5.60 -21.26 -0.12 3.71 16 10 C -0.19 -9.36 6.66 22.84 0.15 -9.21 16 11 C 0.17 6.52 5.78 38.15 0.22 6.74 16 12 N -0.66 -20.75 5.44 -180.34 -0.98 -21.73 16 13 C 0.17 5.79 5.91 38.37 0.23 6.02 16 14 C 0.14 5.32 9.27 85.30 0.79 6.11 16 15 N -0.46 -18.84 10.40 -193.06 -2.01 -20.85 16 16 C 0.19 6.98 7.60 135.02 1.03 8.01 16 17 N -0.45 -14.36 10.55 -193.25 -2.04 -16.40 16 18 C 0.09 1.79 11.20 85.09 0.95 2.75 16 19 C 0.10 1.68 11.22 85.09 0.95 2.63 16 20 N -0.45 -11.75 10.47 -188.05 -1.97 -13.72 16 21 C 0.05 1.77 6.59 40.34 0.27 2.03 16 22 C -0.12 -3.64 10.05 22.86 0.23 -3.41 16 23 C -0.23 -8.15 9.96 22.58 0.23 -7.93 16 24 C -0.10 -3.80 10.00 22.24 0.22 -3.58 16 25 C -0.07 -3.48 7.31 22.90 0.17 -3.32 16 26 F -0.17 -8.53 16.71 44.97 0.75 -7.78 16 27 H 0.29 13.73 8.30 -92.70 -0.77 12.96 16 28 H 0.12 6.29 4.80 -2.91 -0.01 6.28 16 29 H 0.42 10.23 8.92 -92.71 -0.83 9.40 16 30 H 0.16 6.50 6.72 -2.91 -0.02 6.48 16 31 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 34 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -70.20 313.02 2.34 -67.87 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.35 Total: 25.89 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 5.97 Total: -13.08 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -6.76 Total: -114.55 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.75 Total: -7.78 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Total: -70.20 2.34 -67.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213232117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.373 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds