Wall clock time and date at job start Tue Mar 31 2020 09:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48506 * 109.47286 * 264.63940 * 3 2 1 5 5 H 1.48500 * 109.47064 * 24.63606 * 3 2 1 6 6 H 1.48495 * 109.47263 * 144.63657 * 3 2 1 7 7 C 1.37886 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00142 * 4.80587 * 7 2 1 9 9 C 1.50701 * 119.99823 * 184.80629 * 7 2 1 10 10 H 1.09002 * 109.47088 * 4.93970 * 9 7 2 11 11 O 1.42897 * 109.47379 * 124.94680 * 9 7 2 12 12 C 1.42904 * 113.99811 * 269.99974 * 11 9 7 13 13 H 1.08992 * 110.04789 * 53.52184 * 12 11 9 14 14 O 1.45391 * 110.06615 * 291.98071 * 12 11 9 15 15 C 1.34346 * 109.00708 * 240.76260 * 14 12 11 16 16 O 1.21472 * 124.89669 * 179.97438 * 15 14 12 17 17 C 1.47422 * 110.21094 * 0.02562 * 15 14 12 18 18 C 1.39615 * 132.54862 * 180.02562 * 17 15 14 19 19 C 1.37947 * 119.79982 * 179.97438 * 18 17 15 20 20 C 1.38391 * 120.32007 * 359.97438 * 19 18 17 21 21 C 1.38493 * 120.21776 * 0.02562 * 20 19 18 22 22 C 1.37545 * 119.94671 * 359.97438 * 21 20 19 23 23 C 1.50707 * 109.46948 * 244.94887 * 9 7 2 24 24 C 1.38237 * 120.00252 * 95.13539 * 23 9 7 25 25 C 1.38225 * 119.99930 * 179.97438 * 24 23 9 26 26 C 1.38243 * 120.00322 * 359.97438 * 25 24 23 27 27 C 1.38229 * 119.99583 * 0.07185 * 26 25 24 28 28 C 1.38235 * 120.00465 * 359.88982 * 27 26 25 29 29 H 0.97003 * 119.99503 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.10551 * 359.97438 * 18 17 15 31 31 H 1.08000 * 119.84175 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.89386 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.02576 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.99706 * 359.97438 * 24 23 9 35 35 H 1.07998 * 119.99950 * 179.72509 * 25 24 23 36 36 H 1.07992 * 119.99943 * 179.97438 * 26 25 24 37 37 H 1.08001 * 120.00265 * 179.97438 * 27 26 25 38 38 H 1.07999 * 120.00227 * 180.11531 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6101 1.9809 -1.3940 5 1 1.3947 2.6827 0.5836 6 1 3.4855 1.4753 0.8103 7 6 2.0045 -1.1942 -0.0005 8 1 1.4673 -2.1277 -0.0793 9 6 3.5075 -1.1966 0.1088 10 1 3.8620 -0.1780 0.2667 11 8 3.9037 -2.0151 1.2111 12 6 4.0089 -1.3106 2.4499 13 1 3.0815 -0.7764 2.6559 14 8 5.1229 -0.3776 2.4001 15 6 6.0095 -0.7033 3.3554 16 8 7.0493 -0.1127 3.5691 17 6 5.5394 -1.8817 4.1062 18 6 6.0822 -2.5991 5.1738 19 6 5.4031 -3.6853 5.6857 20 6 4.1868 -4.0663 5.1465 21 6 3.6420 -3.3596 4.0873 22 6 4.3106 -2.2750 3.5692 23 6 4.1028 -1.7440 -1.1629 24 6 4.5093 -0.8810 -2.1633 25 6 5.0557 -1.3831 -3.3294 26 6 5.1963 -2.7483 -3.4951 27 6 4.7889 -3.6114 -2.4951 28 6 4.2432 -3.1092 -1.3285 29 1 -0.4849 0.8401 -0.0004 30 1 7.0309 -2.3047 5.5978 31 1 5.8221 -4.2405 6.5119 32 1 3.6608 -4.9175 5.5529 33 1 2.6928 -3.6599 3.6686 34 1 4.3999 0.1856 -2.0337 35 1 5.3692 -0.7090 -4.1128 36 1 5.6228 -3.1406 -4.4064 37 1 4.8983 -4.6780 -2.6246 38 1 3.9266 -3.7835 -0.5465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223314532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:37 Heat of formation + Delta-G solvation = -59.898881 kcal Electronic energy + Delta-G solvation = -25065.141022 eV Core-core repulsion = 21417.151144 eV Total energy + Delta-G solvation = -3647.989878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40048 -38.76429 -38.26747 -37.52320 -36.04475 -32.98808 -31.81036 -31.22057 -30.88926 -30.25649 -27.36988 -25.95449 -24.24080 -22.98892 -22.12967 -21.86548 -20.73507 -20.17302 -17.66535 -17.38875 -17.08811 -16.88871 -16.28840 -15.94208 -15.34492 -14.93609 -14.70566 -14.48618 -14.23488 -13.86834 -13.83029 -13.47201 -12.87252 -12.85974 -12.77286 -12.73652 -12.48708 -11.95709 -11.93026 -11.50978 -11.31115 -11.09377 -11.04825 -10.66574 -10.46556 -10.13768 -9.97740 -9.62604 -9.18038 -9.13820 -9.02423 -8.90444 -8.30140 -7.91385 -6.41939 -4.47188 0.53267 1.13628 2.01451 2.04947 2.55427 3.09289 3.17884 3.20241 3.29511 3.59150 3.79687 4.03745 4.11701 4.43532 4.55875 4.79534 4.83981 4.97218 5.11681 5.30049 5.37568 5.46887 5.49983 5.60810 5.64002 5.81478 5.90499 6.05800 6.14686 6.17979 6.20881 6.23941 6.37830 6.61598 6.62138 6.68092 6.90166 7.06125 7.12339 7.18218 7.30185 7.57043 7.64166 7.74317 8.19365 8.69724 9.17452 10.68821 Molecular weight = 310.10amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.005584 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.433125 B = 5013.390712 C = 5782.688852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.085 3.915 3 Si 0.851 3.149 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.527 4.527 8 H 0.086 0.914 9 C 0.198 3.802 10 H 0.055 0.945 11 O -0.360 6.360 12 C 0.283 3.717 13 H 0.128 0.872 14 O -0.334 6.334 15 C 0.528 3.472 16 O -0.462 6.462 17 C -0.190 4.190 18 C -0.043 4.043 19 C -0.128 4.128 20 C -0.085 4.085 21 C -0.078 4.078 22 C -0.074 4.074 23 C -0.034 4.034 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.103 4.103 29 H 0.271 0.729 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -7.010 6.678 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.121 4.121 3 Si 0.677 3.323 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.564 4.564 8 H 0.104 0.896 9 C 0.144 3.856 10 H 0.072 0.928 11 O -0.280 6.280 12 C 0.189 3.811 13 H 0.145 0.855 14 O -0.252 6.252 15 C 0.370 3.630 16 O -0.349 6.349 17 C -0.191 4.191 18 C -0.061 4.061 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.096 4.096 22 C -0.075 4.075 23 C -0.035 4.035 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.122 4.122 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.115 -6.632 6.559 12.364 hybrid contribution 0.077 1.089 -0.177 1.106 sum 8.192 -5.543 6.382 11.771 Atomic orbital electron populations 1.69873 1.06196 1.27740 1.47099 1.25077 0.94832 0.98859 0.93365 0.87230 0.81019 0.83897 0.80182 1.18997 1.20506 1.17505 1.21226 0.88164 0.95498 1.51508 0.89610 1.19459 0.94834 0.90772 0.80581 0.92755 1.88087 1.87778 1.36243 1.15897 1.22669 0.87305 0.85121 0.86000 0.85476 1.87378 1.33263 1.52321 1.52257 1.20436 0.82191 0.82019 0.78386 1.90824 1.20517 1.56460 1.67073 1.20967 0.97566 0.99869 1.00747 1.20820 0.99206 0.93136 0.92927 1.21174 0.95585 0.97066 1.00738 1.21442 0.95223 0.98834 0.94807 1.20467 1.00671 0.92917 0.95564 1.20622 0.94798 0.96365 0.95701 1.20087 0.93300 0.93695 0.96384 1.20862 0.99766 0.99336 0.94176 1.20936 1.00475 0.95306 0.97224 1.20906 1.02780 0.93584 0.98981 1.21046 1.00059 0.98949 0.94275 1.20921 0.98932 0.95175 0.97137 0.91884 0.84797 0.84793 0.84599 0.83995 0.86989 0.86852 0.87086 0.86954 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.54 13.96 55.43 0.77 -23.77 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.85 19.85 27.33 -169.99 -4.65 15.21 16 4 H -0.26 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.25 -5.73 6.20 56.52 0.35 -5.38 16 7 C -0.53 -13.77 9.17 -34.44 -0.32 -14.08 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.20 4.60 2.17 -29.03 -0.06 4.54 16 10 H 0.05 1.30 3.65 -51.93 -0.19 1.11 16 11 O -0.36 -7.76 9.07 -58.79 -0.53 -8.29 16 12 C 0.28 5.48 4.06 36.05 0.15 5.63 16 13 H 0.13 2.46 8.13 -51.93 -0.42 2.03 16 14 O -0.33 -6.95 10.43 -47.24 -0.49 -7.44 16 15 C 0.53 10.06 8.58 34.47 0.30 10.35 16 16 O -0.46 -9.53 18.04 -18.92 -0.34 -9.87 16 17 C -0.19 -3.00 6.27 -105.08 -0.66 -3.66 16 18 C -0.04 -0.52 10.10 -39.17 -0.40 -0.92 16 19 C -0.13 -1.24 10.02 -39.63 -0.40 -1.63 16 20 C -0.09 -0.85 10.05 -39.43 -0.40 -1.24 16 21 C -0.08 -1.01 10.03 -39.74 -0.40 -1.41 16 22 C -0.07 -1.19 6.04 -104.26 -0.63 -1.82 16 23 C -0.03 -0.75 4.99 -104.62 -0.52 -1.27 16 24 C -0.12 -2.50 9.68 -39.59 -0.38 -2.89 16 25 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 26 C -0.14 -2.35 10.05 -39.58 -0.40 -2.74 16 27 C -0.13 -2.13 10.05 -39.59 -0.40 -2.53 16 28 C -0.10 -2.05 9.35 -39.58 -0.37 -2.42 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.11 2.24 8.00 -52.49 -0.42 1.82 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.12 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -30.71 335.55 -9.56 -40.27 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.00 Total: 5.28 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -5.38 Total: -16.44 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.77 Total: -23.77 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.37 Total: -25.60 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.65 Total: 15.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.71 -9.56 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223314532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.628 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds