Wall clock time and date at job start Tue Mar 31 2020 09:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48506 * 109.47286 * 264.63940 * 3 2 1 5 5 H 1.48500 * 109.47064 * 24.63606 * 3 2 1 6 6 H 1.48495 * 109.47263 * 144.63657 * 3 2 1 7 7 C 1.37886 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00142 * 4.80587 * 7 2 1 9 9 C 1.50701 * 119.99823 * 184.80629 * 7 2 1 10 10 H 1.09002 * 109.47088 * 4.93970 * 9 7 2 11 11 O 1.42897 * 109.47379 * 124.94680 * 9 7 2 12 12 C 1.42904 * 113.99811 * 269.99974 * 11 9 7 13 13 H 1.08992 * 110.04789 * 53.52184 * 12 11 9 14 14 O 1.45391 * 110.06615 * 291.98071 * 12 11 9 15 15 C 1.34346 * 109.00708 * 240.76260 * 14 12 11 16 16 O 1.21472 * 124.89669 * 179.97438 * 15 14 12 17 17 C 1.47422 * 110.21094 * 0.02562 * 15 14 12 18 18 C 1.39615 * 132.54862 * 180.02562 * 17 15 14 19 19 C 1.37947 * 119.79982 * 179.97438 * 18 17 15 20 20 C 1.38391 * 120.32007 * 359.97438 * 19 18 17 21 21 C 1.38493 * 120.21776 * 0.02562 * 20 19 18 22 22 C 1.37545 * 119.94671 * 359.97438 * 21 20 19 23 23 C 1.50707 * 109.46948 * 244.94887 * 9 7 2 24 24 C 1.38237 * 120.00252 * 95.13539 * 23 9 7 25 25 C 1.38225 * 119.99930 * 179.97438 * 24 23 9 26 26 C 1.38243 * 120.00322 * 359.97438 * 25 24 23 27 27 C 1.38229 * 119.99583 * 0.07185 * 26 25 24 28 28 C 1.38235 * 120.00465 * 359.88982 * 27 26 25 29 29 H 0.97003 * 119.99503 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.10551 * 359.97438 * 18 17 15 31 31 H 1.08000 * 119.84175 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.89386 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.02576 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.99706 * 359.97438 * 24 23 9 35 35 H 1.07998 * 119.99950 * 179.72509 * 25 24 23 36 36 H 1.07992 * 119.99943 * 179.97438 * 26 25 24 37 37 H 1.08001 * 120.00265 * 179.97438 * 27 26 25 38 38 H 1.07999 * 120.00227 * 180.11531 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6101 1.9809 -1.3940 5 1 1.3947 2.6827 0.5836 6 1 3.4855 1.4753 0.8103 7 6 2.0045 -1.1942 -0.0005 8 1 1.4673 -2.1277 -0.0793 9 6 3.5075 -1.1966 0.1088 10 1 3.8620 -0.1780 0.2667 11 8 3.9037 -2.0151 1.2111 12 6 4.0089 -1.3106 2.4499 13 1 3.0815 -0.7764 2.6559 14 8 5.1229 -0.3776 2.4001 15 6 6.0095 -0.7033 3.3554 16 8 7.0493 -0.1127 3.5691 17 6 5.5394 -1.8817 4.1062 18 6 6.0822 -2.5991 5.1738 19 6 5.4031 -3.6853 5.6857 20 6 4.1868 -4.0663 5.1465 21 6 3.6420 -3.3596 4.0873 22 6 4.3106 -2.2750 3.5692 23 6 4.1028 -1.7440 -1.1629 24 6 4.5093 -0.8810 -2.1633 25 6 5.0557 -1.3831 -3.3294 26 6 5.1963 -2.7483 -3.4951 27 6 4.7889 -3.6114 -2.4951 28 6 4.2432 -3.1092 -1.3285 29 1 -0.4849 0.8401 -0.0004 30 1 7.0309 -2.3047 5.5978 31 1 5.8221 -4.2405 6.5119 32 1 3.6608 -4.9175 5.5529 33 1 2.6928 -3.6599 3.6686 34 1 4.3999 0.1856 -2.0337 35 1 5.3692 -0.7090 -4.1128 36 1 5.6228 -3.1406 -4.4064 37 1 4.8983 -4.6780 -2.6246 38 1 3.9266 -3.7835 -0.5465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223314532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:37 Heat of formation + Delta-G solvation = -76.337307 kcal Electronic energy + Delta-G solvation = -25065.853846 eV Core-core repulsion = 21417.151144 eV Total energy + Delta-G solvation = -3648.702702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.78040 -40.28200 -39.45570 -39.00073 -37.67226 -34.95021 -33.18958 -32.44226 -32.07750 -31.68762 -29.15139 -27.42316 -25.38676 -24.71125 -23.44379 -23.17407 -22.07557 -21.69417 -19.41833 -18.94759 -18.52992 -18.45396 -17.73267 -17.06956 -16.81502 -16.44409 -16.35534 -15.92267 -15.37288 -15.33876 -15.04822 -14.91814 -14.80024 -14.30396 -14.18472 -13.96106 -13.87628 -13.56211 -13.20318 -12.95849 -12.93314 -12.69502 -12.40663 -12.10268 -12.02200 -11.88665 -11.52672 -11.32534 -11.03058 -10.83318 -10.19079 -10.08478 -9.74387 -9.47187 -8.50328 -6.58627 -0.60829 0.15244 0.55659 0.59708 1.19160 1.23600 1.25973 1.30392 1.78848 2.13426 2.38798 2.58308 2.68597 2.89900 3.04650 3.17564 3.66893 3.99415 4.06042 4.08702 4.18641 4.25085 4.26169 4.34075 4.35604 4.49510 4.50849 4.78612 4.79668 4.88523 5.06556 5.14139 5.23065 5.24913 5.26739 5.30805 5.44946 5.64031 5.67035 5.71882 5.77229 5.92974 6.10434 6.19222 6.26389 6.53378 7.09629 8.64625 Molecular weight = 310.10amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.005584 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.433125 B = 5013.390712 C = 5782.688852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.902 3.098 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.526 4.526 8 H 0.047 0.953 9 C 0.207 3.793 10 H 0.042 0.958 11 O -0.365 6.365 12 C 0.277 3.723 13 H 0.114 0.886 14 O -0.362 6.362 15 C 0.521 3.479 16 O -0.490 6.490 17 C -0.210 4.210 18 C -0.038 4.038 19 C -0.108 4.108 20 C -0.063 4.063 21 C -0.088 4.088 22 C -0.096 4.096 23 C -0.072 4.072 24 C -0.148 4.148 25 C -0.120 4.120 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.122 4.122 29 H 0.274 0.726 30 H 0.153 0.847 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -9.375 7.288 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.726 3.274 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.563 4.563 8 H 0.066 0.934 9 C 0.152 3.848 10 H 0.060 0.940 11 O -0.285 6.285 12 C 0.183 3.817 13 H 0.131 0.869 14 O -0.281 6.281 15 C 0.365 3.635 16 O -0.379 6.379 17 C -0.212 4.212 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.106 4.106 22 C -0.096 4.096 23 C -0.072 4.072 24 C -0.166 4.166 25 C -0.137 4.137 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.140 4.140 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.161 0.839 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.165 0.835 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.064 -9.008 7.172 15.293 hybrid contribution -0.466 1.631 -0.316 1.726 sum 9.597 -7.377 6.856 13.912 Atomic orbital electron populations 1.69972 1.07531 1.28629 1.49340 1.25660 0.95364 1.01667 0.93155 0.86411 0.79806 0.80508 0.80662 1.17826 1.19708 1.17740 1.21249 0.89952 0.93967 1.51158 0.93438 1.19219 0.92926 0.90620 0.82026 0.94029 1.88028 1.87645 1.36276 1.16527 1.22772 0.86632 0.86088 0.86201 0.86931 1.87296 1.34024 1.53306 1.53455 1.20980 0.81506 0.82797 0.78167 1.90778 1.21453 1.57738 1.67884 1.20792 0.97984 0.99667 1.02780 1.21228 0.99967 0.93099 0.91344 1.21738 0.94619 0.95435 1.00703 1.21971 0.95017 0.98593 0.92424 1.20737 1.00852 0.92314 0.96695 1.20478 0.96052 0.97736 0.95378 1.20140 0.95833 0.95127 0.96140 1.21021 1.01192 0.98989 0.95379 1.21346 0.99022 0.96762 0.96605 1.21433 1.00810 0.92866 0.99956 1.21448 0.98335 1.01060 0.92997 1.21008 1.00092 0.94300 0.98588 0.91640 0.82910 0.79934 0.80188 0.83870 0.87758 0.83572 0.82692 0.83454 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.13 13.96 21.45 0.30 -53.83 16 2 C 0.04 2.44 5.47 84.66 0.46 2.90 16 3 Si 0.90 42.99 27.33 68.60 1.87 44.87 16 4 H -0.25 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.25 -12.02 6.20 99.48 0.62 -11.40 16 7 C -0.53 -29.39 9.17 25.60 0.23 -29.16 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 9 C 0.21 10.25 2.17 29.10 0.06 10.32 16 10 H 0.04 2.13 3.65 -2.39 -0.01 2.12 16 11 O -0.37 -16.85 9.07 -126.46 -1.15 -17.99 16 12 C 0.28 11.53 4.06 71.27 0.29 11.82 16 13 H 0.11 4.83 8.13 -2.39 -0.02 4.81 16 14 O -0.36 -16.16 10.43 -45.21 -0.47 -16.63 16 15 C 0.52 20.85 8.58 70.24 0.60 21.45 16 16 O -0.49 -21.04 18.04 19.62 0.35 -20.69 16 17 C -0.21 -6.67 6.27 -20.16 -0.13 -6.80 16 18 C -0.04 -0.83 10.10 22.53 0.23 -0.60 16 19 C -0.11 -1.53 10.02 22.24 0.22 -1.31 16 20 C -0.06 -0.97 10.05 22.37 0.22 -0.74 16 21 C -0.09 -2.17 10.03 22.17 0.22 -1.95 16 22 C -0.10 -3.14 6.04 -19.63 -0.12 -3.26 16 23 C -0.07 -3.27 4.99 -19.86 -0.10 -3.36 16 24 C -0.15 -6.08 9.68 22.27 0.22 -5.86 16 25 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 26 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 27 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 28 C -0.12 -4.90 9.35 22.27 0.21 -4.69 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.10 4.31 8.00 -2.91 -0.02 4.28 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.11 4.58 7.63 -2.91 -0.02 4.56 16 Total: -1.00 -73.91 335.55 5.21 -68.70 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.00 Total: 17.76 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.30 Total: -22.18 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.30 Total: -53.83 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -1.26 Total: -55.31 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.87 Total: 44.87 kcal Total: -73.91 5.21 -68.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223314532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.638 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds