Wall clock time and date at job start Tue Mar 31 2020 09:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47040 * 84.97620 * 3 2 1 5 5 H 1.48496 * 109.47284 * 204.97453 * 3 2 1 6 6 H 1.48502 * 109.47062 * 324.97780 * 3 2 1 7 7 C 1.37880 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99373 * 5.36320 * 7 2 1 9 9 C 1.50696 * 120.00246 * 185.35161 * 7 2 1 10 10 H 1.09002 * 109.46832 * 5.61617 * 9 7 2 11 11 O 1.42900 * 109.46716 * 125.61382 * 9 7 2 12 12 C 1.35667 * 117.00249 * 274.93753 * 11 9 7 13 13 C 1.39285 * 119.73105 * 5.14074 * 12 11 9 14 14 C 1.36462 * 120.13045 * 179.97438 * 13 12 11 15 15 C 1.40043 * 120.02109 * 0.02562 * 14 13 12 16 16 C 1.40421 * 120.28219 * 359.96885 * 15 14 13 17 17 C 1.38559 * 119.73737 * 184.86463 * 12 11 9 18 18 O 1.35370 * 111.07912 * 179.97438 * 16 15 14 19 19 C 1.42829 * 110.53720 * 0.02562 * 18 16 15 20 20 C 1.46900 * 131.75686 * 179.97438 * 15 14 13 21 21 O 1.21338 * 127.70982 * 0.02930 * 20 15 14 22 22 C 1.50692 * 109.47503 * 245.61422 * 9 7 2 23 23 C 1.38234 * 120.00290 * 274.80347 * 22 9 7 24 24 C 1.38237 * 120.00211 * 179.80844 * 23 22 9 25 25 C 1.38232 * 119.99760 * 0.39968 * 24 23 22 26 26 C 1.38234 * 120.00123 * 359.85222 * 25 24 23 27 27 C 1.38237 * 119.99793 * 95.07467 * 22 9 7 28 28 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 29 29 H 1.07992 * 119.93252 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.98562 * 179.97438 * 14 13 12 31 31 H 1.07998 * 119.91897 * 0.02657 * 17 12 11 32 32 H 1.09005 * 110.17316 * 240.90536 * 19 18 16 33 33 H 1.08996 * 110.17975 * 119.09608 * 19 18 16 34 34 H 1.08004 * 120.00035 * 359.97438 * 23 22 9 35 35 H 1.08001 * 119.99639 * 180.23177 * 24 23 22 36 36 H 1.08000 * 119.99823 * 179.83470 * 25 24 23 37 37 H 1.07997 * 119.99637 * 179.97438 * 26 25 24 38 38 H 1.07994 * 120.00185 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3904 2.1077 1.3947 5 1 3.5957 1.4119 -0.5911 6 1 1.5036 2.6197 -0.8035 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1274 -0.0865 9 6 3.5066 -1.1968 0.1223 10 1 3.8586 -0.1805 0.2990 11 8 3.8943 -2.0320 1.2150 12 6 3.9029 -1.4677 2.4487 13 6 3.4410 -0.1643 2.6154 14 6 3.4456 0.4111 3.8527 15 6 3.9156 -0.3085 4.9584 16 6 4.3832 -1.6232 4.8008 17 6 4.3657 -2.1946 3.5338 18 8 4.7911 -2.1399 5.9837 19 6 4.6196 -1.1861 7.0329 20 6 4.0360 0.0480 6.3784 21 8 3.7348 1.0971 6.9083 22 6 4.1130 -1.7239 -1.1526 23 6 4.2617 -3.0860 -1.3358 24 6 4.8143 -3.5697 -2.5069 25 6 5.2258 -2.6910 -3.4914 26 6 5.0819 -1.3287 -3.3061 27 6 4.5257 -0.8451 -2.1366 28 1 -0.4850 0.8401 -0.0004 29 1 3.0787 0.3920 1.7636 30 1 3.0873 1.4221 3.9792 31 1 4.7178 -3.2060 3.3939 32 1 5.5818 -0.9508 7.4880 33 1 3.9323 -1.5737 7.7848 34 1 3.9436 -3.7724 -0.5650 35 1 4.9270 -4.6340 -2.6515 36 1 5.6600 -3.0687 -4.4053 37 1 5.4038 -0.6422 -4.0752 38 1 4.4132 0.2191 -1.9919 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225343600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:32 Heat of formation + Delta-G solvation = -54.709568 kcal Electronic energy + Delta-G solvation = -24699.673670 eV Core-core repulsion = 21051.908817 eV Total energy + Delta-G solvation = -3647.764853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.61762 -41.03746 -39.69218 -39.29629 -37.45322 -35.19786 -33.22468 -32.06495 -31.70142 -31.17103 -29.57508 -29.10075 -25.24975 -24.53130 -23.60389 -23.19874 -21.84914 -21.68942 -19.63002 -19.26491 -18.30872 -18.19243 -17.67180 -17.29395 -16.98049 -16.55081 -16.08346 -15.72931 -15.52739 -15.42487 -15.12388 -15.00960 -14.93175 -14.80905 -14.45998 -14.25142 -14.07306 -13.85298 -13.47210 -13.31090 -12.92993 -12.65453 -12.24659 -12.11410 -11.94299 -11.82320 -11.54540 -11.33931 -10.93473 -10.90731 -9.74465 -9.72218 -9.51008 -9.28745 -8.53997 -6.63860 -0.47742 0.23045 0.53935 0.59977 1.13900 1.14925 1.17371 1.24948 1.61831 2.06799 2.45678 2.58191 2.77995 2.92449 3.03697 3.42629 3.56303 3.85018 3.96110 4.04726 4.15790 4.21308 4.23796 4.28315 4.33120 4.38697 4.41320 4.66571 4.78067 4.83398 4.88631 4.96321 5.09942 5.18187 5.20625 5.25261 5.30295 5.65649 5.69041 5.77273 5.85644 5.97413 6.20532 6.21586 6.36653 6.54492 7.03759 8.61628 Molecular weight = 310.10amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.004690 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.449279 B = 5969.031393 C = 7143.828582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.042 3.958 3 Si 0.895 3.105 4 H -0.249 1.249 5 H -0.228 1.228 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.041 0.959 9 C 0.211 3.789 10 H 0.053 0.947 11 O -0.313 6.313 12 C 0.223 3.777 13 C -0.266 4.266 14 C 0.019 3.981 15 C -0.349 4.349 16 C 0.205 3.795 17 C -0.207 4.207 18 O -0.274 6.274 19 C 0.009 3.991 20 C 0.391 3.609 21 O -0.471 6.471 22 C -0.071 4.071 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.143 4.143 28 H 0.275 0.725 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.322 -2.902 4.393 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.718 3.282 4 H -0.174 1.174 5 H -0.152 1.152 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.059 0.941 9 C 0.157 3.843 10 H 0.071 0.929 11 O -0.225 6.225 12 C 0.174 3.826 13 C -0.285 4.285 14 C 0.001 3.999 15 C -0.351 4.351 16 C 0.157 3.843 17 C -0.226 4.226 18 O -0.185 6.185 19 C -0.065 4.065 20 C 0.273 3.727 21 O -0.349 6.349 22 C -0.072 4.072 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.131 0.869 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.142 -2.694 4.649 14.199 hybrid contribution -0.905 1.197 -0.205 1.515 sum 12.238 -1.497 4.444 13.105 Atomic orbital electron populations 1.69977 1.07988 1.28834 1.48486 1.25762 0.95405 1.02113 0.92711 0.86668 0.81083 0.80117 0.80301 1.17446 1.15188 1.19856 1.21186 0.89926 0.94078 1.51953 0.94059 1.19470 0.93390 0.90284 0.81127 0.92916 1.85987 1.80509 1.42557 1.13494 1.18992 0.87598 0.90204 0.85826 1.21300 1.10386 0.97249 0.99524 1.20348 0.90623 0.98966 0.89981 1.21186 1.18078 0.98268 0.97548 1.18960 0.88696 0.89761 0.86886 1.19171 1.13481 1.03010 0.86976 1.86473 1.78417 1.39642 1.13968 1.24063 1.06962 0.86053 0.89417 1.22857 0.73782 0.88535 0.87536 1.90581 1.43452 1.27957 1.72956 1.19927 0.96433 0.95090 0.95733 1.21038 0.99930 0.94473 0.98613 1.21441 0.98329 1.01082 0.93006 1.21462 1.00516 0.92926 0.99927 1.21368 0.98903 0.96778 0.96554 1.21107 1.00603 0.99316 0.95128 0.91540 0.85759 0.84933 0.82288 0.81707 0.82131 0.86948 0.83590 0.82751 0.83320 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 13.96 21.45 0.30 -53.94 16 2 C 0.04 2.33 5.28 84.66 0.45 2.78 16 3 Si 0.90 39.85 24.63 68.60 1.69 41.54 16 4 H -0.25 -10.54 6.68 99.48 0.66 -9.88 16 5 H -0.23 -9.15 4.92 99.48 0.49 -8.66 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -29.48 8.67 25.60 0.22 -29.26 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 9 C 0.21 9.82 1.91 29.10 0.06 9.88 16 10 H 0.05 2.41 3.39 -2.39 -0.01 2.41 16 11 O -0.31 -13.94 8.91 -89.83 -0.80 -14.74 16 12 C 0.22 9.15 6.59 22.60 0.15 9.30 16 13 C -0.27 -11.21 8.64 22.11 0.19 -11.02 16 14 C 0.02 0.72 10.05 22.29 0.22 0.94 16 15 C -0.35 -11.46 6.24 -20.04 -0.13 -11.59 16 16 C 0.20 6.28 7.21 22.99 0.17 6.45 16 17 C -0.21 -7.06 9.99 22.53 0.23 -6.84 16 18 O -0.27 -6.48 10.97 -86.61 -0.95 -7.43 16 19 C 0.01 0.16 7.93 71.46 0.57 0.73 16 20 C 0.39 10.76 8.02 28.18 0.23 10.99 16 21 O -0.47 -15.39 18.03 -3.21 -0.06 -15.45 16 22 C -0.07 -2.99 4.99 -19.87 -0.10 -3.09 16 23 C -0.12 -4.60 9.35 22.27 0.21 -4.39 16 24 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 25 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 26 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 27 C -0.14 -5.30 9.68 22.27 0.22 -5.08 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.12 5.61 1.31 -2.91 0.00 5.61 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.16 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.17 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 4.32 7.62 -2.91 -0.02 4.30 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.11 4.14 6.60 -2.91 -0.02 4.12 16 Total: -1.00 -68.72 321.75 4.38 -64.34 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.86 Total: 25.62 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.34 Total: -39.93 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.30 Total: -53.94 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.81 Total: -37.63 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.69 Total: 41.54 kcal Total: -68.72 4.38 -64.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225343600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.628 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds