Wall clock time and date at job start Tue Mar 31 2020 09:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39967 * 119.94645 * 2 1 4 4 C 1.35752 * 119.35325 * 180.26796 * 3 2 1 5 5 C 1.50703 * 120.42088 * 179.74205 * 4 3 2 6 6 F 1.39904 * 109.46969 * 239.71879 * 5 4 3 7 7 F 1.39901 * 109.47086 * 119.72282 * 5 4 3 8 8 N 1.36312 * 119.15930 * 359.46790 * 4 3 2 9 9 N 1.39909 * 132.16308 * 180.27932 * 8 4 3 10 10 C 1.30701 * 109.51717 * 179.97438 * 9 8 4 11 11 C 1.40646 * 108.72742 * 0.02562 * 10 9 8 12 12 C 1.46583 * 126.53672 * 179.97438 * 11 10 9 13 13 O 1.21710 * 120.00001 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00133 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00203 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47030 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00299 * 180.02562 * 18 16 15 20 20 Si 1.86809 * 120.00044 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46900 * 89.99817 * 20 18 16 22 22 H 1.48503 * 109.47174 * 210.00097 * 20 18 16 23 23 H 1.48503 * 109.47006 * 330.00174 * 20 18 16 24 24 C 1.36599 * 119.72887 * 0.24771 * 8 4 3 25 25 N 1.31505 * 119.94665 * 179.71001 * 2 1 3 26 26 H 1.08996 * 109.47265 * 270.28435 * 1 2 3 27 27 H 1.09000 * 109.47221 * 30.28833 * 1 2 3 28 28 H 1.09005 * 109.46794 * 150.28944 * 1 2 3 29 29 H 1.07999 * 120.32204 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47152 * 359.71950 * 5 4 3 31 31 H 1.08000 * 125.63607 * 179.97438 * 10 9 8 32 32 H 0.97001 * 119.99855 * 359.97438 * 14 12 11 33 33 H 1.08997 * 109.47092 * 299.99459 * 15 14 12 34 34 H 1.08998 * 109.47212 * 59.99868 * 15 14 12 35 35 H 0.97003 * 120.00011 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5631 1.1988 -0.0055 5 6 4.3396 2.4903 -0.0115 6 9 5.1452 2.5448 -1.1540 7 9 5.1450 2.5555 1.1305 8 7 4.2149 0.0016 0.0001 9 7 5.5748 -0.3273 0.0018 10 6 5.7097 -1.6273 0.0084 11 6 4.4314 -2.2139 0.0107 12 6 4.1294 -3.6482 0.0172 13 8 2.9726 -4.0266 0.0191 14 7 5.1328 -4.5481 0.0222 15 6 4.8310 -5.9817 0.0292 16 6 6.1179 -6.7659 0.0331 17 1 7.0657 -6.2482 0.0301 18 6 6.0852 -8.1442 0.0404 19 7 7.2082 -8.8287 0.0443 20 14 4.4457 -9.0397 0.0449 21 1 4.0116 -9.2843 -1.3540 22 1 4.5923 -10.3373 0.7519 23 1 3.4299 -8.2090 0.7403 24 6 3.4971 -1.1605 0.0060 25 7 2.1634 -1.1395 0.0058 26 1 -0.3633 0.0051 1.0276 27 1 -0.3634 0.8874 -0.5183 28 1 -0.3633 -0.8926 -0.5094 29 1 1.6701 2.1506 0.0004 30 1 3.6460 3.3312 -0.0155 31 1 6.6477 -2.1626 0.0107 32 1 6.0547 -4.2466 0.0210 33 1 4.2531 -6.2269 0.9202 34 1 4.2537 -6.2359 -0.8597 35 1 7.1852 -9.7984 0.0498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348550195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:08 Heat of formation + Delta-G solvation = -17.302071 kcal Electronic energy + Delta-G solvation = -24730.333039 eV Core-core repulsion = 20594.546269 eV Total energy + Delta-G solvation = -4135.786770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.57955 -47.58341 -42.71530 -39.06591 -38.15977 -35.02323 -34.18801 -32.67609 -32.22711 -30.52372 -28.84856 -27.65802 -27.37380 -24.19396 -23.08515 -22.23895 -21.54883 -19.84711 -19.11296 -18.08564 -17.92615 -17.51895 -17.11120 -16.78734 -16.39138 -15.88039 -15.37556 -14.78915 -14.42986 -14.33592 -14.13045 -14.04897 -14.03710 -13.90605 -13.50867 -13.08713 -12.97785 -12.73841 -12.30908 -12.22959 -12.15134 -12.10547 -11.66661 -11.49616 -10.95617 -10.71078 -10.11664 -9.91477 -9.83310 -9.44157 -9.19208 -8.72237 -8.29754 -7.93427 -6.16484 -4.18214 -0.14439 0.37773 1.52208 2.08855 2.56125 2.82181 3.31454 3.33139 3.37725 3.38876 3.47441 3.55775 3.98265 4.04033 4.17697 4.23864 4.28007 4.38721 4.52772 4.59140 4.83921 4.98520 5.11776 5.15538 5.19203 5.31739 5.68652 5.76686 5.95534 6.14835 6.90419 7.05032 7.15372 7.30488 7.34603 7.46038 8.21739 8.59622 8.81599 9.05882 9.44209 10.95447 Molecular weight = 310.10amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003314 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.310129 B = 8448.194271 C = 9544.404730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.197 3.803 3 C -0.177 4.177 4 C 0.107 3.893 5 C 0.327 3.673 6 F -0.182 7.182 7 F -0.182 7.182 8 N -0.300 5.300 9 N -0.297 5.297 10 C 0.128 3.872 11 C -0.260 4.260 12 C 0.579 3.421 13 O -0.544 6.544 14 N -0.702 5.702 15 C 0.224 3.776 16 C -0.542 4.542 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C 0.311 3.689 25 N -0.418 5.418 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.176 0.824 30 H 0.146 0.854 31 H 0.212 0.788 32 H 0.393 0.607 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 27.478 -0.080 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.202 4.202 4 C -0.011 4.011 5 C 0.272 3.728 6 F -0.163 7.163 7 F -0.163 7.163 8 N -0.070 5.070 9 N -0.119 5.119 10 C -0.053 4.053 11 C -0.276 4.276 12 C 0.365 3.635 13 O -0.423 6.423 14 N -0.351 5.351 15 C 0.101 3.899 16 C -0.580 4.580 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.531 5.531 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 C 0.081 3.919 25 N -0.130 5.130 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.194 0.806 30 H 0.163 0.837 31 H 0.228 0.772 32 H 0.227 0.773 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.278 27.105 -0.077 29.358 hybrid contribution 0.037 -0.476 -0.012 0.477 sum -11.241 26.630 -0.089 28.905 Atomic orbital electron populations 1.20856 0.86143 1.04935 1.04453 1.22097 0.98442 0.86739 0.89421 1.21613 0.90711 1.02254 1.05573 1.21265 0.92791 0.86470 1.00588 1.20496 0.85542 0.93935 0.72804 1.93105 1.75757 1.97134 1.50283 1.93104 1.75767 1.97073 1.50335 1.46775 1.08175 1.05179 1.46837 1.77723 0.87854 1.16069 1.30287 1.24342 0.98783 0.90354 0.91822 1.19849 0.90223 0.94030 1.23483 1.16788 0.85770 0.83284 0.77688 1.90790 1.19831 1.80482 1.51166 1.45930 1.08123 1.07834 1.73201 1.19482 0.97572 0.75932 0.96865 1.21101 0.92143 0.91623 1.53113 0.90196 1.24786 0.96689 0.97234 0.93903 1.69884 1.26301 1.07271 1.49638 0.86826 0.84462 0.79439 0.79045 1.19860 1.20968 1.18395 1.20349 0.87669 0.85828 0.98063 1.68161 1.03911 1.28092 1.12797 0.88819 0.89454 0.88928 0.80630 0.83710 0.77200 0.77311 0.95607 0.96071 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.19 36.00 0.37 -0.23 16 2 C 0.20 1.91 6.83 -82.09 -0.56 1.35 16 3 C -0.18 -1.18 9.35 -39.82 -0.37 -1.55 16 4 C 0.11 1.06 6.29 -81.49 -0.51 0.54 16 5 C 0.33 2.40 5.52 36.01 0.20 2.60 16 6 F -0.18 -1.84 17.32 2.25 0.04 -1.80 16 7 F -0.18 -1.84 17.32 2.25 0.04 -1.80 16 8 N -0.30 -4.30 3.86 -8.26 -0.03 -4.33 16 9 N -0.30 -4.51 12.43 30.77 0.38 -4.13 16 10 C 0.13 1.89 11.44 -17.12 -0.20 1.69 16 11 C -0.26 -4.66 6.17 -104.66 -0.65 -5.30 16 12 C 0.58 12.46 7.78 -12.89 -0.10 12.36 16 13 O -0.54 -13.60 16.74 5.18 0.09 -13.51 16 14 N -0.70 -15.07 5.54 -62.83 -0.35 -15.42 16 15 C 0.22 5.67 4.50 -5.19 -0.02 5.65 16 16 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 17 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 19 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 20 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.31 5.21 7.74 -155.83 -1.21 4.01 16 25 N -0.42 -6.48 10.18 -8.25 -0.08 -6.56 16 26 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.18 8.09 -51.93 -0.42 -0.24 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.18 0.15 7.95 -52.49 -0.42 -0.26 16 30 H 0.15 0.18 7.88 -51.93 -0.41 -0.23 16 31 H 0.21 2.34 7.46 -52.49 -0.39 1.95 16 32 H 0.39 7.26 7.24 -40.82 -0.30 6.97 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -39.15 322.51 -5.56 -44.71 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.12 Total: -0.93 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -3.49 Total: 7.82 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.69 Total: -56.48 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -39.15 -5.56 -44.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348550195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.411 kcal (2) G-P(sol) polarization free energy of solvation -39.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds