Wall clock time and date at job start Tue Mar 31 2020 09:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39967 * 119.94645 * 2 1 4 4 C 1.35752 * 119.35325 * 180.26796 * 3 2 1 5 5 C 1.50703 * 120.42088 * 179.74205 * 4 3 2 6 6 F 1.39904 * 109.46969 * 239.71879 * 5 4 3 7 7 F 1.39901 * 109.47086 * 119.72282 * 5 4 3 8 8 N 1.36312 * 119.15930 * 359.46790 * 4 3 2 9 9 N 1.39909 * 132.16308 * 180.27932 * 8 4 3 10 10 C 1.30701 * 109.51717 * 179.97438 * 9 8 4 11 11 C 1.40646 * 108.72742 * 0.02562 * 10 9 8 12 12 C 1.46583 * 126.53672 * 179.97438 * 11 10 9 13 13 O 1.21710 * 120.00001 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00133 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00203 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47030 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00299 * 180.02562 * 18 16 15 20 20 Si 1.86809 * 120.00044 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46900 * 89.99817 * 20 18 16 22 22 H 1.48503 * 109.47174 * 210.00097 * 20 18 16 23 23 H 1.48503 * 109.47006 * 330.00174 * 20 18 16 24 24 C 1.36599 * 119.72887 * 0.24771 * 8 4 3 25 25 N 1.31505 * 119.94665 * 179.71001 * 2 1 3 26 26 H 1.08996 * 109.47265 * 270.28435 * 1 2 3 27 27 H 1.09000 * 109.47221 * 30.28833 * 1 2 3 28 28 H 1.09005 * 109.46794 * 150.28944 * 1 2 3 29 29 H 1.07999 * 120.32204 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47152 * 359.71950 * 5 4 3 31 31 H 1.08000 * 125.63607 * 179.97438 * 10 9 8 32 32 H 0.97001 * 119.99855 * 359.97438 * 14 12 11 33 33 H 1.08997 * 109.47092 * 299.99459 * 15 14 12 34 34 H 1.08998 * 109.47212 * 59.99868 * 15 14 12 35 35 H 0.97003 * 120.00011 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5631 1.1988 -0.0055 5 6 4.3396 2.4903 -0.0115 6 9 5.1452 2.5448 -1.1540 7 9 5.1450 2.5555 1.1305 8 7 4.2149 0.0016 0.0001 9 7 5.5748 -0.3273 0.0018 10 6 5.7097 -1.6273 0.0084 11 6 4.4314 -2.2139 0.0107 12 6 4.1294 -3.6482 0.0172 13 8 2.9726 -4.0266 0.0191 14 7 5.1328 -4.5481 0.0222 15 6 4.8310 -5.9817 0.0292 16 6 6.1179 -6.7659 0.0331 17 1 7.0657 -6.2482 0.0301 18 6 6.0852 -8.1442 0.0404 19 7 7.2082 -8.8287 0.0443 20 14 4.4457 -9.0397 0.0449 21 1 4.0116 -9.2843 -1.3540 22 1 4.5923 -10.3373 0.7519 23 1 3.4299 -8.2090 0.7403 24 6 3.4971 -1.1605 0.0060 25 7 2.1634 -1.1395 0.0058 26 1 -0.3633 0.0051 1.0276 27 1 -0.3634 0.8874 -0.5183 28 1 -0.3633 -0.8926 -0.5094 29 1 1.6701 2.1506 0.0004 30 1 3.6460 3.3312 -0.0155 31 1 6.6477 -2.1626 0.0107 32 1 6.0547 -4.2466 0.0210 33 1 4.2531 -6.2269 0.9202 34 1 4.2537 -6.2359 -0.8597 35 1 7.1852 -9.7984 0.0498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348550195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:08 Heat of formation + Delta-G solvation = -47.817640 kcal Electronic energy + Delta-G solvation = -24731.656293 eV Core-core repulsion = 20594.546269 eV Total energy + Delta-G solvation = -4137.110024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.19815 -48.22881 -43.70887 -40.41752 -39.42608 -36.15402 -35.86644 -34.41780 -33.44126 -31.65660 -30.03525 -29.26670 -27.94921 -25.45670 -24.29255 -23.34576 -23.03907 -21.32358 -20.13974 -19.18295 -18.66593 -18.58354 -18.18540 -17.77537 -17.42947 -17.38793 -16.78774 -16.10404 -15.98823 -15.75483 -15.07958 -15.00618 -14.83802 -14.81990 -14.56691 -14.36551 -14.25466 -14.09698 -13.77437 -13.18706 -13.06444 -12.89171 -12.77319 -12.72252 -12.72144 -12.50347 -11.92146 -11.64788 -11.02122 -10.91521 -10.90296 -10.71368 -9.98658 -9.27463 -8.38968 -6.45684 -0.95711 -0.51099 0.62686 0.89264 1.33568 1.35063 1.49104 1.85993 1.93418 2.29391 2.41423 2.47407 2.57483 2.82084 2.96415 3.03100 3.48078 3.67313 3.67671 3.69596 3.80879 3.84593 4.19283 4.37787 4.56692 4.73501 4.80184 4.81470 4.97452 5.03773 5.18778 5.26721 5.29104 5.52411 5.98360 6.11498 6.43983 6.54386 6.86278 7.16925 7.42490 8.75695 Molecular weight = 310.10amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003314 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.310129 B = 8448.194271 C = 9544.404730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.207 3.793 3 C -0.139 4.139 4 C 0.077 3.923 5 C 0.323 3.677 6 F -0.202 7.202 7 F -0.202 7.202 8 N -0.304 5.304 9 N -0.318 5.318 10 C 0.140 3.860 11 C -0.315 4.315 12 C 0.584 3.416 13 O -0.589 6.589 14 N -0.701 5.701 15 C 0.237 3.763 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.028 3.972 19 N -0.930 5.930 20 Si 0.936 3.064 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.262 1.262 24 C 0.311 3.689 25 N -0.484 5.484 26 H 0.112 0.888 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.252 0.748 30 H 0.223 0.777 31 H 0.234 0.766 32 H 0.406 0.594 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 31.164 -0.114 34.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.046 3.954 3 C -0.162 4.162 4 C -0.040 4.040 5 C 0.269 3.731 6 F -0.183 7.183 7 F -0.183 7.183 8 N -0.073 5.073 9 N -0.139 5.139 10 C -0.042 4.042 11 C -0.332 4.332 12 C 0.372 3.628 13 O -0.471 6.471 14 N -0.351 5.351 15 C 0.113 3.887 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.569 5.569 20 Si 0.760 3.240 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.187 1.187 24 C 0.078 3.922 25 N -0.198 5.198 26 H 0.130 0.870 27 H 0.156 0.844 28 H 0.091 0.909 29 H 0.268 0.732 30 H 0.239 0.761 31 H 0.250 0.750 32 H 0.242 0.758 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.887 30.866 -0.114 33.847 hybrid contribution 0.666 -1.349 0.001 1.505 sum -13.221 29.517 -0.113 32.343 Atomic orbital electron populations 1.21138 0.82961 1.06402 1.05916 1.23141 1.00449 0.86578 0.85259 1.22460 0.89334 1.03850 1.00583 1.22360 0.94447 0.86098 1.01093 1.21459 0.85757 0.94655 0.71215 1.93065 1.76609 1.97162 1.51443 1.93064 1.76617 1.97097 1.51498 1.46961 1.07601 1.06245 1.46476 1.77615 0.88987 1.15901 1.31416 1.24602 0.98674 0.90306 0.90594 1.19441 0.92294 0.92240 1.29185 1.17193 0.84793 0.84740 0.76031 1.90731 1.21420 1.81568 1.53412 1.45716 1.09158 1.06449 1.73756 1.19090 0.95927 0.78030 0.95651 1.21273 0.92380 0.92080 1.52627 0.92017 1.25571 1.00010 0.98120 0.93549 1.69979 1.28307 1.07900 1.50725 0.85874 0.80143 0.78501 0.79490 1.18937 1.19569 1.18652 1.20392 0.88476 0.86420 0.96927 1.68240 1.03478 1.31421 1.16615 0.87012 0.84446 0.90930 0.73230 0.76085 0.75023 0.75797 0.96981 0.97099 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.19 71.24 0.73 0.00 16 2 C 0.21 3.33 6.83 43.03 0.29 3.62 16 3 C -0.14 -1.08 9.35 22.11 0.21 -0.88 16 4 C 0.08 1.25 6.29 41.29 0.26 1.51 16 5 C 0.32 3.40 5.52 71.24 0.39 3.79 16 6 F -0.20 -3.57 17.32 44.97 0.78 -2.79 16 7 F -0.20 -3.57 17.32 44.97 0.78 -2.79 16 8 N -0.30 -8.51 3.86 -180.06 -0.70 -9.20 16 9 N -0.32 -9.75 12.43 -56.58 -0.70 -10.46 16 10 C 0.14 4.30 11.44 85.45 0.98 5.28 16 11 C -0.31 -11.89 6.17 -19.89 -0.12 -12.01 16 12 C 0.58 26.55 7.78 86.42 0.67 27.22 16 13 O -0.59 -31.10 16.74 -4.38 -0.07 -31.17 16 14 N -0.70 -31.64 5.54 -470.91 -2.61 -34.25 16 15 C 0.24 12.45 4.50 85.63 0.38 12.83 16 16 C -0.55 -31.36 9.83 25.60 0.25 -31.11 16 17 H 0.06 3.68 7.84 -2.91 -0.02 3.66 16 18 C 0.03 1.62 5.47 84.65 0.46 2.08 16 19 N -0.93 -56.79 13.96 21.45 0.30 -56.49 16 20 Si 0.94 45.61 27.47 68.60 1.88 47.49 16 21 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -12.80 6.54 99.48 0.65 -12.15 16 24 C 0.31 10.62 7.74 133.98 1.04 11.65 16 25 N -0.48 -14.87 10.18 -180.00 -1.83 -16.70 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.14 -0.39 8.09 -2.39 -0.02 -0.41 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.25 -1.98 7.95 -2.91 -0.02 -2.00 16 30 H 0.22 -1.12 7.88 -2.39 -0.02 -1.14 16 31 H 0.23 5.45 7.46 -2.91 -0.02 5.43 16 32 H 0.41 15.85 7.24 -92.71 -0.67 15.18 16 33 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 34 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -93.90 322.51 3.82 -90.09 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 0.44 Total: 2.27 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 5.54 Total: 24.00 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -5.54 Total: -127.10 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.07 Total: -31.17 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.56 Total: -5.58 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -93.90 3.82 -90.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348550195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -93.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds