Wall clock time and date at job start Tue Mar 31 2020 10:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99784 * 2 1 4 4 H 1.48496 * 109.47409 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47216 * 300.00385 * 3 2 1 6 6 H 1.48503 * 109.47230 * 59.99899 * 3 2 1 7 7 C 1.38809 * 120.00669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00414 * 196.92187 * 7 2 1 9 9 N 1.36938 * 119.99631 * 16.92301 * 7 2 1 10 10 C 1.47152 * 120.98156 * 26.23537 * 9 7 2 11 11 C 1.53299 * 108.41953 * 129.46345 * 10 9 7 12 12 O 1.42963 * 109.21892 * 52.28078 * 11 10 9 13 13 C 1.42966 * 114.16814 * 297.41917 * 12 11 10 14 14 H 1.08999 * 109.51125 * 302.60767 * 13 12 11 15 15 C 1.52999 * 109.51090 * 182.50619 * 13 12 11 16 16 N 1.46499 * 109.47275 * 65.00089 * 15 13 12 17 17 C 1.34770 * 120.00323 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99637 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00483 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47520 * 179.97438 * 19 17 16 21 21 C 1.38422 * 122.53438 * 90.00314 * 20 19 17 22 22 C 1.33390 * 114.91959 * 179.97438 * 21 20 19 23 23 S 1.75878 * 109.59188 * 0.02562 * 22 21 20 24 24 C 1.33380 * 122.54091 * 269.71506 * 20 19 17 25 25 C 1.47165 * 120.99161 * 206.16521 * 9 7 2 26 26 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.68620 * 9.72200 * 10 9 7 28 28 H 1.08999 * 109.68213 * 249.20661 * 10 9 7 29 29 H 1.08992 * 109.51435 * 172.20376 * 11 10 9 30 30 H 1.08999 * 109.50681 * 292.35866 * 11 10 9 31 31 H 1.08997 * 109.46715 * 184.99875 * 15 13 12 32 32 H 1.09003 * 109.46832 * 305.00126 * 15 13 12 33 33 H 0.97005 * 119.99600 * 359.97438 * 16 15 13 34 34 H 1.08998 * 109.47451 * 300.00916 * 19 17 16 35 35 H 1.09007 * 109.46667 * 60.00269 * 19 17 16 36 36 H 1.07997 * 122.54220 * 359.95807 * 21 20 19 37 37 H 1.07995 * 125.20050 * 179.97438 * 22 21 20 38 38 H 1.08000 * 125.20370 * 0.02753 * 24 20 19 39 39 H 1.08997 * 109.64987 * 110.81498 * 25 9 7 40 40 H 1.08997 * 109.68157 * 350.27584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0553 -1.2221 0.2728 9 7 1.3703 -2.3625 -0.3442 10 6 0.1979 -2.3455 -1.2334 11 6 0.4246 -3.3673 -2.3534 12 8 0.7656 -4.6301 -1.7764 13 6 1.9822 -4.6213 -1.0256 14 1 2.8011 -4.2885 -1.6634 15 6 2.2757 -6.0321 -0.5115 16 7 2.5279 -6.9230 -1.6468 17 6 2.8109 -8.2232 -1.4332 18 8 2.8562 -8.6559 -0.3011 19 6 3.0697 -9.1398 -2.6011 20 6 3.3602 -10.5291 -2.0947 21 6 2.3663 -11.4718 -1.8955 22 6 2.7935 -12.6520 -1.4439 23 16 4.5406 -12.6105 -1.2459 24 6 4.5949 -10.9454 -1.8097 25 6 1.8352 -3.6636 0.1624 26 1 -0.4850 0.8400 0.0004 27 1 0.0771 -1.3509 -1.6628 28 1 -0.6953 -2.6122 -0.6684 29 1 -0.4868 -3.4703 -2.9422 30 1 1.2377 -3.0290 -2.9956 31 1 3.1539 -6.0082 0.1337 32 1 1.4189 -6.3981 0.0543 33 1 2.4912 -6.5769 -2.5523 34 1 2.1912 -9.1639 -3.2458 35 1 3.9261 -8.7736 -3.1675 36 1 1.3240 -11.2672 -2.0906 37 1 2.1628 -13.5026 -1.2316 38 1 5.4908 -10.3502 -1.9079 39 1 1.1073 -4.0635 0.8683 40 1 2.7987 -3.5419 0.6572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753645554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:08 Heat of formation + Delta-G solvation = -23.429870 kcal Electronic energy + Delta-G solvation = -22784.078356 eV Core-core repulsion = 19305.406594 eV Total energy + Delta-G solvation = -3478.671761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95654 -38.62199 -37.76140 -34.87391 -34.28465 -31.90515 -31.30227 -30.53731 -28.43513 -27.33093 -25.37864 -23.44733 -23.15702 -21.83093 -20.67351 -19.64592 -18.89981 -17.84853 -17.16225 -16.83657 -16.22661 -15.88373 -15.42413 -15.01073 -14.79970 -14.42233 -14.10384 -13.75201 -13.36755 -13.27099 -13.19628 -13.05221 -12.77856 -12.67693 -12.42385 -12.34107 -11.77292 -11.57027 -11.16006 -10.97188 -10.89712 -10.74024 -10.43980 -10.28251 -10.02665 -9.90948 -9.67717 -9.10737 -8.97574 -8.94596 -8.58811 -8.54020 -6.79406 -5.87967 -3.31652 0.84891 1.49845 1.80636 2.46346 2.68704 3.30978 3.36152 3.39758 3.41537 4.20828 4.39947 4.58851 4.71405 4.93347 5.04495 5.12036 5.19712 5.28531 5.30101 5.45082 5.46581 5.49248 5.77262 5.83281 5.85387 6.00871 6.12228 6.19404 6.25789 6.27671 6.33411 6.45174 6.52991 6.72292 7.06702 7.47945 7.56819 7.67591 7.81805 8.28029 8.29724 9.07653 9.70335 10.27035 11.20216 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.040218 B = 0.002267 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.046615 B =12348.394378 C =12660.923422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.722 5.722 17 C 0.511 3.489 18 O -0.536 6.536 19 C -0.083 4.083 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.213 4.213 23 S 0.089 5.911 24 C -0.199 4.199 25 C 0.121 3.879 26 H 0.255 0.745 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.030 0.970 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -20.968 -8.371 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.413 6.413 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.150 4.150 22 C -0.349 4.349 23 S 0.353 5.647 24 C -0.335 4.335 25 C -0.006 4.006 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.237 0.763 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.048 0.952 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.203 -22.339 -7.040 24.504 hybrid contribution -0.661 2.436 -0.792 2.645 sum 6.542 -19.903 -7.832 22.367 Atomic orbital electron populations 1.70043 1.05280 1.25588 1.53762 1.25056 0.95359 0.98514 1.00771 0.86182 0.79305 0.83671 0.77365 1.20203 1.21471 1.21598 1.19237 0.92666 0.84424 1.42086 0.91284 1.44082 1.33582 1.01003 1.53151 1.21448 0.89141 0.98331 0.89766 1.23323 0.99007 0.84895 0.96576 1.87788 1.41206 1.32594 1.69331 1.22802 0.87482 0.93895 0.95273 0.92373 1.21400 1.01576 0.87858 0.88479 1.45965 1.71553 1.09061 1.10764 1.20485 0.76860 0.82334 0.90691 1.90723 1.50938 1.75517 1.24118 1.20378 1.04536 0.90752 0.96884 1.18338 0.92410 0.95667 1.03015 1.20038 1.00520 0.92478 1.01974 1.25513 0.97600 1.02540 1.09216 1.84181 1.04551 1.10343 1.65668 1.25396 1.01259 0.98796 1.08024 1.21447 0.98943 0.87220 0.92980 0.93519 0.88762 0.95366 0.90031 0.94105 0.90239 0.90748 0.76302 0.87769 0.87989 0.84308 0.81932 0.82015 0.95225 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.85 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.68 3.05 -171.82 -0.52 -15.21 16 10 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 11 C 0.04 0.74 6.99 37.31 0.26 1.00 16 12 O -0.39 -7.08 10.33 -35.23 -0.36 -7.44 16 13 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.93 5.34 -4.04 -0.02 1.91 16 16 N -0.72 -8.94 5.50 -60.30 -0.33 -9.27 16 17 C 0.51 6.56 7.82 -10.99 -0.09 6.48 16 18 O -0.54 -9.16 16.03 5.55 0.09 -9.07 16 19 C -0.08 -0.74 5.96 -29.03 -0.17 -0.91 16 20 C -0.08 -0.85 4.29 -106.25 -0.46 -1.31 16 21 C -0.12 -1.21 9.98 -41.21 -0.41 -1.62 16 22 C -0.21 -1.97 11.23 29.04 0.33 -1.64 16 23 S 0.09 0.82 23.34 -107.50 -2.51 -1.69 16 24 C -0.20 -1.98 10.98 29.03 0.32 -1.67 16 25 C 0.12 2.50 6.02 -3.52 -0.02 2.48 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.40 4.15 8.47 -40.82 -0.35 3.81 16 34 H 0.10 0.73 8.13 -51.93 -0.42 0.30 16 35 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.51 347.95 -9.10 -41.60 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.70 Total: 2.82 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.59 Total: 1.96 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.24 Total: -49.60 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.27 Total: -16.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.51 -9.10 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.171 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds