Wall clock time and date at job start Tue Mar 31 2020 10:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48496 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47105 * 300.00513 * 3 2 1 6 6 H 1.48503 * 109.46951 * 60.00244 * 3 2 1 7 7 C 1.38809 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00788 * 163.08838 * 7 2 1 9 9 N 1.36936 * 119.99460 * 342.80484 * 7 2 1 10 10 C 1.47153 * 120.98594 * 333.91871 * 9 7 2 11 11 C 1.53292 * 108.38450 * 230.51258 * 10 9 7 12 12 O 1.42957 * 109.22418 * 307.69552 * 11 10 9 13 13 C 1.42969 * 114.16803 * 62.58576 * 12 11 10 14 14 H 1.09002 * 109.51221 * 57.38965 * 13 12 11 15 15 C 1.52994 * 109.51207 * 177.49573 * 13 12 11 16 16 N 1.46501 * 109.47227 * 299.99615 * 15 13 12 17 17 C 1.34774 * 119.99916 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.50695 * 109.47728 * 179.97438 * 19 17 16 21 21 C 1.38425 * 122.53855 * 89.99665 * 20 19 17 22 22 C 1.33387 * 114.91689 * 179.97438 * 21 20 19 23 23 S 1.75875 * 109.59858 * 359.97438 * 22 21 20 24 24 C 1.33391 * 122.53713 * 269.71420 * 20 19 17 25 25 C 1.47153 * 120.97980 * 153.63896 * 9 7 2 26 26 H 0.97001 * 119.99904 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.68152 * 350.23461 * 10 9 7 28 28 H 1.09000 * 109.68372 * 110.75187 * 10 9 7 29 29 H 1.08998 * 109.51523 * 67.62141 * 11 10 9 30 30 H 1.09000 * 109.51172 * 187.77401 * 11 10 9 31 31 H 1.09001 * 109.47405 * 59.99629 * 15 13 12 32 32 H 1.09005 * 109.47026 * 179.97438 * 15 13 12 33 33 H 0.96993 * 119.99951 * 0.02562 * 16 15 13 34 34 H 1.09001 * 109.46803 * 299.99979 * 19 17 16 35 35 H 1.09005 * 109.47107 * 59.99405 * 19 17 16 36 36 H 1.07997 * 122.53866 * 359.95778 * 21 20 19 37 37 H 1.08002 * 125.19966 * 179.97438 * 22 21 20 38 38 H 1.07995 * 125.20742 * 0.02562 * 24 20 19 39 39 H 1.09000 * 109.68024 * 249.21035 * 25 9 7 40 40 H 1.08995 * 109.68462 * 9.76105 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3715 -2.3616 0.3495 10 6 0.2007 -2.3422 1.2408 11 6 0.4307 -3.3605 2.3633 12 8 0.7707 -4.6249 1.7895 13 6 1.9856 -4.6179 1.0357 14 1 2.8059 -4.2827 1.6704 15 6 2.2784 -6.0301 0.5253 16 7 2.4159 -6.9421 1.6635 17 6 2.6778 -8.2473 1.4534 18 8 2.8003 -8.6668 0.3220 19 6 2.8198 -9.1854 2.6242 20 6 3.1081 -10.5765 2.1214 21 6 4.3954 -11.0408 1.9127 22 6 4.4748 -12.2952 1.4661 23 16 2.8569 -12.9612 1.2871 24 6 2.1424 -11.4554 1.8490 25 6 1.8318 -3.6634 -0.1593 26 1 -0.4850 0.8401 0.0004 27 1 0.0806 -1.3464 1.6674 28 1 -0.6934 -2.6108 0.6783 29 1 1.2452 -3.0200 3.0026 30 1 -0.4792 -3.4621 2.9548 31 1 1.4585 -6.3639 -0.1108 32 1 3.2045 -6.0239 -0.0497 33 1 2.3184 -6.6066 2.5683 34 1 3.6397 -8.8513 3.2600 35 1 1.8937 -9.1919 3.1990 36 1 5.2691 -10.4334 2.0972 37 1 5.3923 -12.8214 1.2478 38 1 1.0838 -11.2703 1.9558 39 1 1.0992 -4.0634 -0.8603 40 1 2.7922 -3.5429 -0.6603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753645555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:12 Heat of formation + Delta-G solvation = -23.480690 kcal Electronic energy + Delta-G solvation = -22792.005429 eV Core-core repulsion = 19313.331464 eV Total energy + Delta-G solvation = -3478.673965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94883 -38.61291 -37.75495 -34.87116 -34.27323 -31.89553 -31.29985 -30.52868 -28.42930 -27.33455 -25.37275 -23.44820 -23.15280 -21.82319 -20.64424 -19.66491 -18.89767 -17.84265 -17.16494 -16.82836 -16.13091 -16.04456 -15.23958 -15.00289 -14.93823 -14.40317 -14.08730 -13.75332 -13.33769 -13.29276 -13.19324 -13.07830 -12.75904 -12.67650 -12.41064 -12.34194 -11.76611 -11.56438 -11.16298 -10.96744 -10.89509 -10.73575 -10.44319 -10.28371 -10.02753 -9.91152 -9.67209 -9.11046 -8.96283 -8.94078 -8.58656 -8.53787 -6.79474 -5.88068 -3.31863 0.85297 1.50193 1.81084 2.46315 2.69506 3.30970 3.36582 3.39866 3.41643 4.20995 4.40029 4.58826 4.72881 4.94892 5.03985 5.12964 5.19984 5.29419 5.30392 5.43829 5.46601 5.49272 5.76513 5.84117 5.84595 6.01202 6.12411 6.19985 6.26369 6.27428 6.33442 6.45324 6.53508 6.72277 7.06442 7.47669 7.58287 7.67695 7.81375 8.28762 8.29989 9.07519 9.70247 10.27029 11.19984 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.042033 B = 0.002259 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.989182 B =12390.613986 C =12639.161204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.131 3.869 16 N -0.721 5.721 17 C 0.511 3.489 18 O -0.537 6.537 19 C -0.083 4.083 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.214 4.214 23 S 0.090 5.910 24 C -0.198 4.198 25 C 0.121 3.879 26 H 0.255 0.745 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.030 0.970 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -21.033 8.437 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.007 3.993 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.414 6.414 19 C -0.125 4.125 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.349 4.349 23 S 0.353 5.647 24 C -0.334 4.334 25 C -0.006 4.006 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.048 0.952 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.141 -22.745 7.124 24.382 hybrid contribution 0.949 2.782 0.769 3.038 sum 6.090 -19.963 7.893 22.314 Atomic orbital electron populations 1.70044 1.05287 1.25593 1.53734 1.25056 0.95357 0.98525 1.00760 0.86182 0.79316 0.83675 0.77362 1.20198 1.21601 1.21473 1.19236 0.92700 0.84474 1.42016 0.91282 1.44100 1.33840 1.01032 1.52839 1.21445 0.89148 0.98373 0.89722 1.23318 0.99006 0.84840 0.96601 1.87773 1.41406 1.32500 1.69264 1.22895 0.87488 0.93875 0.95229 0.92323 1.21412 1.01961 0.87396 0.88536 1.45936 1.72382 1.08168 1.10763 1.20488 0.76702 0.82490 0.90710 1.90722 1.49845 1.76555 1.24235 1.20374 1.04749 0.90554 0.96858 1.18340 0.92634 0.95432 1.03097 1.20022 0.97545 0.95423 1.02033 1.25510 1.00472 0.99639 1.09327 1.84188 0.98930 1.15744 1.65803 1.25417 1.03112 0.96902 1.07936 1.21532 0.98945 0.87227 0.92881 0.93521 0.88771 0.95379 0.94086 0.90041 0.90837 0.90284 0.76225 0.87880 0.87893 0.84363 0.81952 0.81970 0.95210 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.15 55.49 0.62 -25.12 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 3 Si 0.91 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.85 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.67 3.04 -171.58 -0.52 -15.19 16 10 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 11 C 0.04 0.74 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.04 10.13 -35.23 -0.36 -7.39 16 13 C 0.07 1.10 2.88 -26.36 -0.08 1.03 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.94 5.37 -4.04 -0.02 1.91 16 16 N -0.72 -8.98 5.45 -60.29 -0.33 -9.31 16 17 C 0.51 6.59 7.82 -10.99 -0.09 6.50 16 18 O -0.54 -9.18 16.03 5.55 0.09 -9.09 16 19 C -0.08 -0.75 5.96 -29.04 -0.17 -0.92 16 20 C -0.08 -0.86 4.29 -106.25 -0.46 -1.32 16 21 C -0.12 -1.19 9.98 -41.21 -0.41 -1.60 16 22 C -0.21 -1.96 11.23 29.04 0.33 -1.63 16 23 S 0.09 0.83 23.34 -107.50 -2.51 -1.68 16 24 C -0.20 -2.02 10.98 29.04 0.32 -1.70 16 25 C 0.12 2.50 6.05 -3.31 -0.02 2.48 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 4.23 8.35 -40.82 -0.34 3.89 16 34 H 0.10 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -32.44 347.68 -9.08 -41.52 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.69 Total: 2.89 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.59 Total: 1.95 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.23 Total: -49.62 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.27 Total: -16.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.44 -9.08 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.039 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds