Wall clock time and date at job start Tue Mar 31 2020 09:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35776 * 116.99778 * 2 1 4 4 C 1.38021 * 123.47643 * 0.03480 * 3 2 1 5 5 C 1.33608 * 115.08841 * 179.97438 * 4 3 2 6 6 S 1.70569 * 111.14732 * 359.97438 * 5 4 3 7 7 C 1.37274 * 123.46899 * 179.97438 * 3 2 1 8 8 C 1.41722 * 125.47782 * 0.06560 * 7 3 2 9 9 O 1.21774 * 119.99597 * 359.94848 * 8 7 3 10 10 N 1.34770 * 120.00164 * 179.97438 * 8 7 3 11 11 C 1.47019 * 125.65105 * 0.02562 * 10 8 7 12 12 C 1.54323 * 107.27369 * 181.02645 * 11 10 8 13 13 C 1.55153 * 102.94086 * 22.18935 * 12 11 10 14 14 H 1.09004 * 111.00405 * 82.61915 * 13 12 11 15 15 N 1.46505 * 111.00452 * 206.42362 * 13 12 11 16 16 C 1.46499 * 119.99702 * 60.00380 * 15 13 12 17 17 C 1.36931 * 120.00219 * 240.00324 * 15 13 12 18 18 H 1.07999 * 120.00232 * 23.24644 * 17 15 13 19 19 C 1.38813 * 119.99948 * 203.24453 * 17 15 13 20 20 N 1.31621 * 119.99840 * 13.76397 * 19 17 15 21 21 Si 1.86803 * 119.99860 * 193.75662 * 19 17 15 22 22 H 1.48504 * 109.47061 * 60.00733 * 21 19 17 23 23 H 1.48502 * 109.46982 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47511 * 300.00117 * 21 19 17 25 25 C 1.47425 * 125.64668 * 179.71660 * 10 8 7 26 26 H 1.08996 * 109.47465 * 59.99310 * 1 2 3 27 27 H 1.08996 * 109.46812 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46599 * 299.99414 * 1 2 3 29 29 H 1.08007 * 122.45610 * 0.22737 * 4 3 2 30 30 H 1.08005 * 124.42430 * 180.02562 * 5 4 3 31 31 H 1.09006 * 109.88078 * 300.44211 * 11 10 8 32 32 H 1.08995 * 109.88240 * 61.45071 * 11 10 8 33 33 H 1.09003 * 110.71982 * 140.55586 * 12 11 10 34 34 H 1.09004 * 110.71849 * 263.65004 * 12 11 10 35 35 H 1.09002 * 109.47432 * 95.15641 * 16 15 13 36 36 H 1.09004 * 109.47245 * 215.15845 * 16 15 13 37 37 H 1.09001 * 109.47109 * 335.15752 * 16 15 13 38 38 H 0.96998 * 119.99695 * 179.97438 * 20 19 17 39 39 H 1.09001 * 110.36964 * 274.74360 * 25 10 8 40 40 H 1.09003 * 110.36780 * 37.06763 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3652 2.4108 0.0007 5 6 2.1389 3.5000 0.0011 6 16 3.7922 3.0805 0.0014 7 6 3.4094 1.3645 0.0005 8 6 4.3568 0.3105 -0.0002 9 8 3.9794 -0.8473 -0.0005 10 7 5.6753 0.5895 -0.0001 11 6 6.2663 1.9356 0.0012 12 6 7.7996 1.7629 -0.0256 13 6 7.9785 0.3375 -0.6115 14 1 7.9210 0.3524 -1.7000 15 7 9.2389 -0.2601 -0.1634 16 6 9.4880 -0.4579 1.2666 17 6 10.1839 -0.6338 -1.0812 18 1 10.1975 -0.1761 -2.0593 19 6 11.1245 -1.6010 -0.7543 20 7 10.9548 -2.3491 0.3152 21 14 12.6309 -1.8409 -1.8327 22 1 13.4138 -0.5798 -1.8771 23 1 13.4733 -2.9275 -1.2715 24 1 12.2029 -2.2066 -3.2068 25 6 6.7639 -0.4047 0.0051 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 0.2866 2.4660 0.0049 30 1 1.7662 4.5137 0.0021 31 1 5.9396 2.4848 -0.8819 32 1 5.9670 2.4710 0.9022 33 1 8.2603 2.5075 -0.6749 34 1 8.2122 1.8234 0.9815 35 1 9.2107 -1.4742 1.5467 36 1 10.5458 -0.2990 1.4766 37 1 8.8929 0.2523 1.8407 38 1 11.6119 -3.0251 0.5434 39 1 6.9860 -0.7187 1.0250 40 1 6.4947 -1.2652 -0.6075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972774409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:13 Heat of formation + Delta-G solvation = 4.129737 kcal Electronic energy + Delta-G solvation = -23566.546089 eV Core-core repulsion = 20089.069402 eV Total energy + Delta-G solvation = -3477.476687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31299 -39.31808 -37.23341 -36.02666 -34.75630 -31.76519 -30.40947 -29.68362 -28.08337 -26.90726 -26.03137 -25.02718 -23.35087 -22.34366 -20.72737 -19.59650 -19.26303 -17.93942 -17.04378 -16.70510 -16.24004 -16.10574 -15.68509 -15.19628 -14.66351 -14.51018 -14.01832 -13.88193 -13.38449 -13.26607 -13.01023 -12.79886 -12.55958 -12.36253 -12.22843 -12.00213 -11.78758 -11.62930 -11.26310 -10.95851 -10.84546 -10.63806 -10.47865 -10.43561 -10.28307 -9.87423 -9.82817 -9.58945 -8.94949 -8.57638 -8.41783 -7.99793 -6.78109 -5.74312 -3.22234 0.41342 1.34566 1.70222 2.22564 3.29744 3.37530 3.39925 3.45113 3.46257 3.52199 4.44406 4.48341 4.79813 4.88637 4.94650 4.99704 5.06656 5.25149 5.29133 5.30530 5.40535 5.47250 5.59367 5.66741 5.81686 5.90599 5.98712 6.03294 6.34429 6.41375 6.60483 6.69348 6.80351 6.91340 7.13373 7.34377 7.72355 7.79620 7.88054 8.36940 8.52807 9.20390 9.82794 10.31939 11.29993 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.003235 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.205857 B = 8652.137441 C = 9228.593217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.181 3.819 4 C -0.213 4.213 5 C -0.224 4.224 6 S 0.248 5.752 7 C -0.315 4.315 8 C 0.602 3.398 9 O -0.528 6.528 10 N -0.615 5.615 11 C 0.091 3.909 12 C -0.147 4.147 13 C 0.173 3.827 14 H 0.079 0.921 15 N -0.584 5.584 16 C 0.159 3.841 17 C -0.263 4.263 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.091 3.909 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.002 0.998 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.939 14.308 0.695 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.120 3.880 4 C -0.247 4.247 5 C -0.362 4.362 6 S 0.515 5.485 7 C -0.435 4.435 8 C 0.392 3.608 9 O -0.407 6.407 10 N -0.350 5.350 11 C -0.034 4.034 12 C -0.187 4.187 13 C 0.062 3.938 14 H 0.097 0.903 15 N -0.304 5.304 16 C 0.014 3.986 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.737 3.263 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.033 4.033 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.163 0.837 30 H 0.187 0.813 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.663 14.134 0.782 22.636 hybrid contribution -1.030 -0.684 -0.448 1.315 sum -18.694 13.450 0.335 23.032 Atomic orbital electron populations 1.23160 0.78630 1.04317 1.01088 1.86357 1.20623 1.24141 1.87129 1.18254 0.90267 0.85430 0.94041 1.19988 1.01821 0.90993 1.11888 1.25425 1.01715 1.03495 1.05576 1.83565 1.01191 0.95744 1.68039 1.22797 0.95303 0.98214 1.27146 1.15190 0.80329 0.87617 0.77682 1.90872 1.78743 1.20162 1.50912 1.48379 1.04948 1.08624 1.73049 1.22098 0.95946 0.84523 1.00831 1.23185 0.91151 1.01223 1.03149 1.21514 0.85290 0.89689 0.97289 0.90259 1.43844 1.12677 1.70951 1.02919 1.20815 0.98270 0.97153 0.82344 1.19170 1.06838 1.16671 0.96545 0.91228 1.25061 1.00353 0.95905 0.98005 1.70065 1.35346 1.22041 1.27238 0.86304 0.82792 0.77314 0.79917 1.21013 1.21636 1.20855 1.23092 0.86067 0.92148 1.01976 0.92709 0.87932 0.92721 0.83737 0.81335 0.91416 0.91605 0.90391 0.90325 0.94833 0.93936 0.97911 0.93556 0.91313 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.94 101.05 1.00 1.21 16 2 O -0.27 -3.98 9.36 -36.56 -0.34 -4.32 16 3 C 0.18 2.50 6.70 -40.01 -0.27 2.24 16 4 C -0.21 -2.12 9.17 -41.28 -0.38 -2.50 16 5 C -0.22 -1.93 10.90 29.11 0.32 -1.61 16 6 S 0.25 2.56 18.18 -107.50 -1.95 0.61 16 7 C -0.31 -4.77 6.22 -38.60 -0.24 -5.01 16 8 C 0.60 11.37 7.64 -14.93 -0.11 11.26 16 9 O -0.53 -11.99 16.09 -12.40 -0.20 -12.19 16 10 N -0.62 -10.93 3.32 -173.75 -0.58 -11.50 16 11 C 0.09 1.28 5.14 -3.07 -0.02 1.27 16 12 C -0.15 -2.32 6.49 -24.90 -0.16 -2.49 16 13 C 0.17 3.48 3.55 -65.66 -0.23 3.25 16 14 H 0.08 1.61 7.96 -51.93 -0.41 1.20 16 15 N -0.58 -14.25 2.96 -170.89 -0.51 -14.76 16 16 C 0.16 3.81 7.56 59.85 0.45 4.26 16 17 C -0.26 -7.08 9.60 -15.06 -0.14 -7.22 16 18 H 0.07 1.82 7.87 -52.49 -0.41 1.40 16 19 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 20 N -0.90 -26.16 10.77 55.49 0.60 -25.56 16 21 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.09 1.85 6.46 -2.41 -0.02 1.84 16 26 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 29 H 0.15 1.04 6.99 -52.48 -0.37 0.67 16 30 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.07 0.83 6.76 -51.88 -0.35 0.48 16 32 H 0.07 0.81 6.91 -51.93 -0.36 0.45 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.28 6.47 -51.93 -0.34 0.95 16 35 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 36 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 37 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.07 1.47 6.96 -51.93 -0.36 1.11 16 40 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -33.77 333.48 -8.20 -41.97 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.33 Total: -2.41 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 0.11 Total: 6.55 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.49 Total: -51.82 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.54 Total: -16.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.95 Total: 0.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.77 -8.20 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972774409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.103 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds