Wall clock time and date at job start Tue Mar 31 2020 09:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.50706 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.33815 * 122.44803 * 90.02765 * 4 3 2 6 6 S 1.70609 * 110.95452 * 180.02562 * 5 4 3 7 7 C 1.75824 * 91.56615 * 0.02562 * 6 5 4 8 8 C 1.46581 * 125.46069 * 180.02562 * 7 6 5 9 9 O 1.21709 * 120.00231 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99988 * 359.96923 * 8 7 6 11 11 C 1.46504 * 120.00170 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84645 * 23.80430 * 11 10 8 13 13 C 1.53785 * 113.61480 * 154.99836 * 11 10 8 14 14 C 1.53780 * 87.07895 * 139.98515 * 13 11 10 15 15 H 1.09001 * 113.61456 * 89.20136 * 14 13 11 16 16 N 1.46495 * 113.61393 * 220.02195 * 14 13 11 17 17 C 1.36938 * 120.00174 * 205.00249 * 16 14 13 18 18 H 1.08000 * 119.99930 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00088 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00315 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47064 * 59.99703 * 21 19 17 23 23 H 1.48492 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46771 * 299.99662 * 21 19 17 25 25 C 1.53776 * 113.61890 * 252.49925 * 11 10 8 26 26 C 1.36650 * 109.07999 * 359.73755 * 7 6 5 27 27 H 1.08995 * 109.47354 * 300.00131 * 1 2 3 28 28 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 31 31 H 1.09000 * 109.47736 * 300.00432 * 3 2 1 32 32 H 1.08003 * 124.52212 * 0.02562 * 5 4 3 33 33 H 0.96996 * 120.00013 * 0.02562 * 10 8 7 34 34 H 1.08994 * 113.61221 * 254.53319 * 13 11 10 35 35 H 1.09000 * 113.60972 * 25.43772 * 13 11 10 36 36 H 0.97008 * 120.00084 * 25.00197 * 16 14 13 37 37 H 0.96999 * 119.99719 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.61094 * 334.56766 * 25 11 10 39 39 H 1.09001 * 113.61275 * 105.46813 * 25 11 10 40 40 H 1.08007 * 123.35085 * 180.24433 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2288 1.1301 -1.1283 6 16 5.8952 0.9973 -0.7876 7 6 5.5922 1.0196 0.9441 8 6 6.6179 0.9376 1.9880 9 8 6.2955 0.9624 3.1614 10 7 7.9181 0.8345 1.6486 11 6 8.9434 0.7530 2.6919 12 1 8.5551 0.3770 3.6385 13 6 10.2340 0.0533 2.2341 14 6 11.0021 1.1203 3.0318 15 1 11.1787 0.8451 4.0716 16 7 12.2107 1.6004 2.3573 17 6 13.2416 2.1247 3.0905 18 1 13.1635 2.1847 4.1660 19 6 14.3865 2.5801 2.4513 20 7 14.4816 2.5075 1.1405 21 14 15.7925 3.2961 3.4515 22 1 16.2955 2.2720 4.4020 23 1 16.8904 3.7057 2.5394 24 1 15.3095 4.4790 4.2081 25 6 9.7816 2.0345 2.8334 26 6 4.2477 1.1322 1.1609 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8081 1.1641 -2.1224 33 1 8.1752 0.8150 0.7135 34 1 10.3483 -0.9552 2.6312 35 1 10.4019 0.1074 1.1584 36 1 12.2807 1.5469 1.3913 37 1 15.2819 2.8254 0.6940 38 1 9.8258 2.6301 1.9216 39 1 9.5307 2.6253 3.7144 40 1 3.8063 1.1714 2.1459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022374721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:19 Heat of formation + Delta-G solvation = -14.920315 kcal Electronic energy + Delta-G solvation = -21974.008775 eV Core-core repulsion = 18495.706016 eV Total energy + Delta-G solvation = -3478.302759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00660 -39.08146 -37.97662 -37.04026 -34.11568 -32.78882 -30.83545 -29.79689 -28.15899 -26.20166 -25.30899 -25.13109 -23.94371 -21.99830 -20.65354 -19.61799 -19.23242 -18.37654 -17.15083 -16.82124 -16.63718 -16.21485 -15.75472 -15.53691 -15.00378 -14.68498 -14.51421 -14.11384 -13.62319 -13.34853 -13.17935 -13.03878 -12.87730 -12.47324 -12.31370 -12.14909 -11.92682 -11.75677 -11.27598 -11.18951 -10.92148 -10.66254 -10.52094 -10.35256 -10.12370 -10.10227 -9.90009 -9.62237 -9.17214 -8.91591 -8.85392 -8.74418 -6.99350 -5.80525 -3.09448 0.26713 1.19552 1.57304 1.95888 3.12991 3.17446 3.43256 3.47722 3.48649 3.65927 4.51858 4.56229 4.58494 4.77836 4.83786 4.95160 4.95808 5.00019 5.04554 5.21530 5.24534 5.26797 5.36258 5.46712 5.58332 5.85253 5.91077 5.95388 6.02619 6.11356 6.24647 6.30123 6.45805 6.60555 6.70906 6.71618 7.04644 7.53414 7.68151 8.17737 8.37911 9.49250 10.05686 10.40326 11.41731 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.002206 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.593198 B =12691.016239 C =13078.361593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.123 3.877 4 C -0.123 4.123 5 C -0.214 4.214 6 S 0.219 5.781 7 C -0.263 4.263 8 C 0.588 3.412 9 O -0.533 6.533 10 N -0.708 5.708 11 C 0.118 3.882 12 H 0.112 0.888 13 C -0.159 4.159 14 C 0.169 3.831 15 H 0.081 0.919 16 N -0.710 5.710 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.176 4.176 26 C -0.043 4.043 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.170 0.830 33 H 0.397 0.603 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.529 -4.133 -6.595 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.045 3.955 4 C -0.136 4.136 5 C -0.352 4.352 6 S 0.488 5.512 7 C -0.383 4.383 8 C 0.374 3.626 9 O -0.412 6.412 10 N -0.358 5.358 11 C 0.013 3.987 12 H 0.130 0.870 13 C -0.199 4.199 14 C 0.057 3.943 15 H 0.099 0.901 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.219 4.219 26 C -0.075 4.075 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.188 0.812 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.105 -4.320 -6.547 26.302 hybrid contribution -0.735 0.795 0.359 1.141 sum -25.841 -3.525 -6.188 26.804 Atomic orbital electron populations 1.22767 0.80849 1.02965 1.00047 1.87984 1.19666 1.27425 1.95412 1.21004 0.88315 0.85098 1.01128 1.18400 0.95831 1.07417 0.91984 1.25220 0.99013 1.07608 1.03375 1.83134 1.03530 1.66303 0.98238 1.24697 0.98220 1.18072 0.97338 1.16947 0.81833 0.76514 0.87295 1.90820 1.81519 1.50648 1.18172 1.45947 1.05628 1.73873 1.10334 1.22578 0.85216 0.99317 0.91542 0.86980 1.23883 0.94541 0.99792 1.01682 1.21342 0.85640 0.91409 0.95948 0.90107 1.42346 1.13887 1.72103 1.06412 1.19275 0.94366 1.32828 0.91152 0.91010 1.24768 0.98470 1.01940 0.95680 1.69647 1.28897 1.52663 1.06881 0.86245 0.81945 0.79006 0.78858 1.21192 1.21695 1.21210 1.24352 0.98431 0.97012 1.02055 1.20582 0.91001 0.96141 0.99826 0.93876 0.94037 0.89475 0.91988 0.92245 0.81247 0.76915 0.91306 0.89933 0.78080 0.93405 0.90149 0.92079 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.61 10.69 -35.23 -0.38 -3.98 16 3 C 0.12 0.97 6.18 36.01 0.22 1.19 16 4 C -0.12 -1.18 5.41 -106.45 -0.58 -1.76 16 5 C -0.21 -1.82 10.67 29.18 0.31 -1.50 16 6 S 0.22 2.00 22.16 -107.50 -2.38 -0.38 16 7 C -0.26 -3.22 6.45 -36.79 -0.24 -3.46 16 8 C 0.59 8.78 7.78 -12.90 -0.10 8.68 16 9 O -0.53 -9.68 16.44 5.18 0.09 -9.60 16 10 N -0.71 -9.79 5.35 -54.35 -0.29 -10.08 16 11 C 0.12 1.80 4.24 -67.12 -0.28 1.52 16 12 H 0.11 1.77 7.46 -51.93 -0.39 1.39 16 13 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 14 C 0.17 3.29 4.48 -67.12 -0.30 2.98 16 15 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 16 N -0.71 -17.41 5.40 -52.64 -0.28 -17.70 16 17 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C -0.18 -3.10 7.68 -25.92 -0.20 -3.30 16 26 C -0.04 -0.49 9.79 -40.44 -0.40 -0.89 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.36 8.12 -51.93 -0.42 -0.07 16 32 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.40 4.68 7.84 -40.82 -0.32 4.36 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 36 H 0.39 9.94 7.92 -40.82 -0.32 9.62 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -32.89 357.49 -8.69 -41.58 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.64 Total: 9.90 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.89 Total: -5.29 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.15 Total: -54.81 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.29 Total: -13.58 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.89 -8.69 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022374721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.663 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds