Wall clock time and date at job start Tue Mar 31 2020 10:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38360 * 119.86153 * 2 1 4 4 C 1.37942 * 120.15745 * 179.73734 * 3 2 1 5 5 C 1.39593 * 119.88124 * 0.51436 * 4 3 2 6 6 C 1.47856 * 120.14012 * 179.73784 * 5 4 3 7 7 O 1.21543 * 120.00078 * 179.72589 * 6 5 4 8 8 N 1.34777 * 119.99811 * 359.72418 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47551 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.47626 * 305.00563 * 10 9 8 12 12 C 1.53006 * 109.47172 * 65.00257 * 10 9 8 13 13 C 1.53003 * 109.47495 * 184.99999 * 10 9 8 14 14 N 1.46497 * 109.47315 * 175.00148 * 13 10 9 15 15 C 1.36935 * 120.00006 * 180.02562 * 14 13 10 16 16 H 1.08002 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00105 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47597 * 90.00074 * 19 17 15 21 21 H 1.48503 * 109.47222 * 210.00390 * 19 17 15 22 22 H 1.48506 * 109.47153 * 330.00024 * 19 17 15 23 23 C 1.39537 * 119.72532 * 359.46929 * 5 4 3 24 24 C 1.38106 * 119.83832 * 0.27175 * 23 5 4 25 25 Cl 1.73599 * 119.94202 * 180.02562 * 24 23 5 26 26 H 1.08990 * 109.47243 * 270.02270 * 1 2 3 27 27 H 1.09001 * 109.47165 * 30.02657 * 1 2 3 28 28 H 1.09004 * 109.47184 * 150.02185 * 1 2 3 29 29 H 1.07992 * 119.92013 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.06125 * 180.27998 * 4 3 2 31 31 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 32 32 H 1.09000 * 109.47024 * 300.00478 * 9 8 6 33 33 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 34 34 H 1.08999 * 109.46595 * 59.99675 * 12 10 9 35 35 H 1.08998 * 109.47740 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46739 * 300.00557 * 12 10 9 37 37 H 1.09001 * 109.46939 * 295.00391 * 13 10 9 38 38 H 1.09003 * 109.46443 * 54.99992 * 13 10 9 39 39 H 0.97006 * 120.00151 * 359.97438 * 14 13 10 40 40 H 0.97001 * 119.99949 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08300 * 180.25351 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1999 0.0000 4 6 3.5753 1.2070 0.0055 5 6 4.2770 0.0003 0.0001 6 6 5.7556 0.0013 0.0001 7 8 6.3640 -1.0509 0.0005 8 7 6.4286 1.1690 -0.0004 9 6 7.8936 1.1701 0.0001 10 6 8.4026 2.6129 0.0000 11 1 7.9679 3.1515 -0.8419 12 6 7.9969 3.2969 1.3072 13 6 9.9275 2.6158 -0.1251 14 7 10.4050 3.9955 -0.2453 15 6 11.7450 4.2478 -0.3704 16 1 12.4499 3.4296 -0.3810 17 6 12.1975 5.5552 -0.4848 18 7 11.3384 6.5523 -0.4724 19 14 14.0254 5.8994 -0.6563 20 1 14.3946 5.9087 -2.0946 21 1 14.3387 7.2212 -0.0563 22 1 14.7962 4.8419 0.0458 23 6 3.5773 -1.2069 0.0005 24 6 2.1963 -1.2007 0.0005 25 17 1.3230 -2.7011 0.0017 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6524 2.1331 0.0004 30 1 4.1114 2.1446 0.0100 31 1 5.9430 2.0087 -0.0004 32 1 8.2569 0.6570 0.8905 33 1 8.2576 0.6560 -0.8895 34 1 8.4316 2.7582 2.1492 35 1 8.3591 4.3249 1.3070 36 1 6.9106 3.2948 1.3964 37 1 10.3656 2.1555 0.7605 38 1 10.2203 2.0515 -1.0105 39 1 9.7718 4.7304 -0.2369 40 1 11.6545 7.4659 -0.5519 41 1 4.1144 -2.1439 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753630604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:56 Heat of formation + Delta-G solvation = -43.039616 kcal Electronic energy + Delta-G solvation = -22076.730697 eV Core-core repulsion = 18595.164887 eV Total energy + Delta-G solvation = -3481.565810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41068 -39.82711 -38.23151 -37.46642 -36.03221 -34.40569 -33.73442 -32.07699 -31.63943 -28.85327 -27.64870 -26.81579 -24.55016 -23.78550 -23.32770 -21.63333 -21.19831 -19.47714 -18.79507 -17.58118 -16.82668 -16.59286 -16.44673 -16.30250 -16.14813 -15.68321 -15.43080 -15.11452 -15.01834 -14.75402 -14.52451 -14.15807 -13.67845 -13.56956 -13.32365 -13.27454 -12.95516 -12.92976 -12.80962 -12.49218 -12.30123 -12.17541 -12.16422 -12.00239 -11.92991 -11.71573 -11.65724 -11.11453 -10.93861 -10.25168 -9.97697 -9.72108 -8.98721 -7.95217 -5.23131 -0.35655 0.10381 1.03248 1.48260 1.49363 1.57849 1.68334 2.05104 2.56963 2.65171 3.38526 3.51561 3.67301 3.71777 3.84359 3.96293 3.97986 4.07450 4.18240 4.33034 4.41333 4.54537 4.64848 4.70110 4.75702 4.77805 4.80329 4.94135 5.02483 5.06035 5.13147 5.13433 5.20223 5.28667 5.31655 5.38434 5.48337 5.50782 5.65779 6.27738 6.44377 7.09775 7.34720 8.09828 8.34318 9.28138 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.037952 B = 0.002060 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.594868 B =13587.656044 C =14162.998119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.050 4.050 3 C -0.109 4.109 4 C -0.070 4.070 5 C -0.144 4.144 6 C 0.556 3.444 7 O -0.581 6.581 8 N -0.705 5.705 9 C 0.137 3.863 10 C -0.094 4.094 11 H 0.081 0.919 12 C -0.137 4.137 13 C 0.156 3.844 14 N -0.741 5.741 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.972 3.028 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.272 1.272 23 C -0.063 4.063 24 C -0.059 4.059 25 Cl -0.062 7.062 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.414 0.586 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.875 -12.208 1.993 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.147 4.147 6 C 0.344 3.656 7 O -0.462 6.462 8 N -0.357 5.357 9 C 0.013 3.987 10 C -0.113 4.113 11 H 0.100 0.900 12 C -0.194 4.194 13 C 0.029 3.971 14 N -0.384 5.384 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.617 5.617 19 Si 0.801 3.199 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.197 1.197 23 C -0.083 4.083 24 C -0.086 4.086 25 Cl -0.033 7.033 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.192 0.808 30 H 0.177 0.823 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.315 -13.125 1.993 29.474 hybrid contribution 1.005 0.566 -0.147 1.163 sum -25.310 -12.559 1.845 28.315 Atomic orbital electron populations 1.21038 0.88110 1.04739 1.04168 1.20390 0.98437 0.90961 0.95276 1.21381 0.93384 0.98460 0.99497 1.21734 0.95238 0.97136 0.94766 1.19738 0.91820 0.94827 1.08321 1.18506 0.87744 0.83564 0.75770 1.90764 1.70768 1.32738 1.51930 1.45773 1.07319 1.08646 1.73979 1.21196 0.79067 0.96328 1.02129 1.21335 0.95193 0.94821 0.99940 0.90023 1.21744 1.01562 1.00219 0.95873 1.20729 0.92457 0.86268 0.97679 1.42495 1.04465 1.02991 1.88466 1.19618 0.85376 0.92142 1.40666 0.90925 1.25532 1.01869 0.95575 1.03700 1.69795 1.34373 0.98448 1.59132 0.85159 0.80270 0.76937 0.77508 1.21449 1.22061 1.19669 1.21084 0.92383 0.98663 0.96193 1.20789 0.91678 0.88013 1.08098 1.98366 1.75974 1.32044 1.96953 0.89168 0.88590 0.90937 0.80846 0.82319 0.74704 0.91565 0.91889 0.93019 0.93704 0.90391 0.96085 0.96247 0.78998 0.93952 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.60 71.24 0.68 -0.22 16 2 C -0.05 -0.61 5.89 -19.79 -0.12 -0.73 16 3 C -0.11 -1.07 9.68 22.23 0.22 -0.85 16 4 C -0.07 -0.89 9.54 22.53 0.21 -0.67 16 5 C -0.14 -2.86 5.87 -20.09 -0.12 -2.98 16 6 C 0.56 14.12 7.77 86.79 0.67 14.80 16 7 O -0.58 -19.71 16.35 -3.85 -0.06 -19.78 16 8 N -0.70 -15.06 5.23 -465.99 -2.44 -17.50 16 9 C 0.14 3.56 5.06 86.38 0.44 3.99 16 10 C -0.09 -2.69 2.46 -10.79 -0.03 -2.72 16 11 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 12 C -0.14 -3.67 8.94 71.98 0.64 -3.03 16 13 C 0.16 6.04 5.65 86.38 0.49 6.53 16 14 N -0.74 -36.77 5.33 -343.44 -1.83 -38.60 16 15 C -0.25 -13.70 9.99 84.04 0.84 -12.86 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 18 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 19 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C -0.06 -1.33 9.38 22.55 0.21 -1.11 16 24 C -0.06 -1.01 6.31 22.29 0.14 -0.87 16 25 Cl -0.06 -1.01 27.27 -2.72 -0.07 -1.09 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.10 0.33 8.08 -2.39 -0.02 0.31 16 28 H 0.07 0.61 6.89 -2.38 -0.02 0.60 16 29 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 30 H 0.16 1.15 6.40 -2.91 -0.02 1.13 16 31 H 0.41 6.25 5.69 -92.71 -0.53 5.73 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 36 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.38 19.51 6.85 -92.70 -0.64 18.88 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.13 3.05 7.65 -2.91 -0.02 3.03 16 Total: -1.00 -71.12 356.88 2.55 -68.56 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.11 Total: 22.79 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.76 Total: -4.49 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -3.99 Total: -114.01 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.78 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.09 kcal Total: -71.12 2.55 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.524 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds