Wall clock time and date at job start Tue Mar 31 2020 10:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38363 * 119.85762 * 2 1 4 4 C 1.37940 * 120.15960 * 180.25861 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.44008 * 4 3 2 6 6 C 1.47842 * 120.14114 * 180.30548 * 5 4 3 7 7 O 1.21560 * 119.99928 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00126 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99814 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46809 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.47198 * 54.99894 * 10 9 8 12 12 C 1.53001 * 109.46924 * 294.99739 * 10 9 8 13 13 C 1.52995 * 109.46765 * 175.00147 * 10 9 8 14 14 N 1.46500 * 109.47042 * 184.99539 * 13 10 9 15 15 C 1.36939 * 120.00148 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00222 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99733 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00321 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99685 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47035 * 120.00112 * 19 17 15 22 22 H 1.48503 * 109.47161 * 240.00178 * 19 17 15 23 23 C 1.39549 * 119.72270 * 0.28057 * 5 4 3 24 24 C 1.38098 * 119.83604 * 359.97438 * 23 5 4 25 25 Cl 1.73601 * 119.93778 * 180.02562 * 24 23 5 26 26 H 1.08999 * 109.47749 * 270.29977 * 1 2 3 27 27 H 1.09007 * 109.47389 * 30.30292 * 1 2 3 28 28 H 1.09004 * 109.47027 * 150.30062 * 1 2 3 29 29 H 1.08002 * 119.92307 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.06486 * 179.72207 * 4 3 2 31 31 H 0.96996 * 120.00045 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47071 * 299.99442 * 9 8 6 33 33 H 1.08990 * 109.47253 * 60.00037 * 9 8 6 34 34 H 1.09007 * 109.47264 * 300.00725 * 12 10 9 35 35 H 1.09001 * 109.47032 * 59.99695 * 12 10 9 36 36 H 1.08991 * 109.47491 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47189 * 304.99435 * 13 10 9 38 38 H 1.09003 * 109.47498 * 64.99539 * 13 10 9 39 39 H 0.97001 * 119.99789 * 0.02562 * 14 13 10 40 40 H 0.96998 * 119.99948 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.08109 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2072 -0.0054 5 6 4.2770 0.0005 0.0010 6 6 5.7554 0.0016 0.0021 7 8 6.3625 1.0548 -0.0030 8 7 6.4302 -1.1651 0.0077 9 6 7.8953 -1.1639 0.0082 10 6 8.4063 -2.6061 0.0144 11 1 7.9724 -3.1489 -0.8252 12 6 8.0016 -3.2849 1.3245 13 6 9.9312 -2.6072 -0.1107 14 7 10.4107 -3.9868 -0.2247 15 6 11.7512 -4.2377 -0.3488 16 1 12.4549 -3.4186 -0.3630 17 6 12.2055 -5.5449 -0.4574 18 7 11.3478 -6.5432 -0.4416 19 14 14.0340 -5.8871 -0.6274 20 1 14.7806 -4.6035 -0.6201 21 1 14.4874 -6.7305 0.5077 22 1 14.2876 -6.5994 -1.9055 23 6 3.5773 -1.2068 0.0068 24 6 2.1963 -1.2006 0.0068 25 17 1.3232 -2.7010 0.0148 26 1 -0.3634 0.0054 1.0276 27 1 -0.3634 0.8873 -0.5186 28 1 -0.3633 -0.8927 -0.5092 29 1 1.6522 2.1332 -0.0004 30 1 4.1113 2.1448 -0.0099 31 1 5.9458 -2.0054 0.0114 32 1 8.2585 -0.6540 -0.8840 33 1 8.2579 -0.6458 0.8959 34 1 8.4355 -2.7419 2.1643 35 1 6.9153 -3.2839 1.4138 36 1 8.3660 -4.3121 1.3292 37 1 10.2233 -2.0465 -0.9986 38 1 10.3687 -2.1424 0.7729 39 1 9.7786 -4.7225 -0.2131 40 1 11.6653 -7.4566 -0.5171 41 1 4.1144 -2.1438 0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:00 Heat of formation + Delta-G solvation = -23.029122 kcal Electronic energy + Delta-G solvation = -22168.601450 eV Core-core repulsion = 18687.903361 eV Total energy + Delta-G solvation = -3480.698090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56041 -38.99808 -36.96432 -36.69836 -34.49823 -33.46585 -32.42301 -31.19229 -30.06216 -28.11763 -26.40299 -25.26754 -23.29482 -23.02505 -22.11650 -20.63980 -19.98971 -18.32051 -17.00439 -16.69465 -15.80999 -15.67549 -15.49161 -15.38060 -14.70295 -14.55458 -14.39702 -14.22355 -13.70316 -13.61123 -13.03383 -12.88924 -12.83452 -12.63599 -12.37922 -12.30463 -12.07925 -11.78434 -11.72893 -11.29522 -11.07693 -10.93413 -10.73464 -10.59516 -10.44875 -10.14769 -9.95885 -9.68708 -9.42339 -9.19664 -9.00024 -8.88826 -6.92978 -5.77776 -3.06171 0.34325 0.72443 1.68746 2.51299 3.01636 3.40721 3.43267 3.49228 3.51303 4.16639 4.20663 4.54102 4.58733 4.63630 4.76792 5.00149 5.01012 5.11812 5.13948 5.18857 5.27557 5.36280 5.53247 5.57190 5.63340 5.78307 5.83830 5.87366 5.94426 5.96922 6.08477 6.20343 6.23733 6.36279 6.42107 6.63694 6.75551 6.84926 7.36390 7.70567 8.04694 8.41349 9.52741 10.09853 10.44574 11.45298 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.002341 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.412560 B =11956.916663 C =12978.670310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.054 4.054 3 C -0.117 4.117 4 C -0.052 4.052 5 C -0.125 4.125 6 C 0.557 3.443 7 O -0.536 6.536 8 N -0.718 5.718 9 C 0.126 3.874 10 C -0.111 4.111 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.161 3.839 14 N -0.731 5.731 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.073 4.073 24 C -0.046 4.046 25 Cl -0.060 7.060 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.187 13.576 1.798 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.136 4.136 4 C -0.071 4.071 5 C -0.128 4.128 6 C 0.343 3.657 7 O -0.414 6.414 8 N -0.369 5.369 9 C 0.003 3.997 10 C -0.130 4.130 11 H 0.095 0.905 12 C -0.200 4.200 13 C 0.032 3.968 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.093 4.093 24 C -0.073 4.073 25 Cl -0.031 7.031 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.605 14.206 1.782 28.468 hybrid contribution 0.553 -1.186 -0.100 1.313 sum -24.052 13.020 1.682 27.402 Atomic orbital electron populations 1.20954 0.89907 1.03873 1.03302 1.20009 0.97075 0.91398 0.96990 1.21021 0.93786 0.97409 1.01340 1.21397 0.93783 0.98118 0.93788 1.19946 0.93411 0.93645 1.05801 1.18106 0.86601 0.84128 0.76852 1.90789 1.69654 1.31052 1.49898 1.46009 1.08300 1.08218 1.74422 1.21482 0.77777 0.97801 1.02670 1.21567 0.98487 0.93783 0.99211 0.90469 1.21801 0.99291 1.02270 0.96589 1.20572 0.89163 0.88942 0.98074 1.42346 1.05416 1.01142 1.88649 1.19284 0.83837 0.91959 1.41813 0.91081 1.24743 0.97726 0.95596 1.03035 1.69664 1.32599 0.98327 1.57720 0.86108 0.85029 0.77774 0.77241 1.20533 1.21875 1.21884 1.21229 0.92282 0.98360 0.97417 1.20671 0.92089 0.87354 1.07160 1.98382 1.76277 1.31570 1.96886 0.90188 0.90704 0.90496 0.84301 0.83855 0.76443 0.91040 0.91030 0.92724 0.93994 0.91045 0.96076 0.95933 0.78206 0.93575 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.60 36.00 0.35 -0.29 16 2 C -0.05 -0.40 5.89 -104.50 -0.62 -1.01 16 3 C -0.12 -0.84 9.68 -39.64 -0.38 -1.22 16 4 C -0.05 -0.47 9.59 -39.18 -0.38 -0.85 16 5 C -0.12 -1.30 5.87 -104.97 -0.62 -1.91 16 6 C 0.56 7.18 7.77 -12.33 -0.10 7.09 16 7 O -0.54 -8.69 16.35 5.31 0.09 -8.60 16 8 N -0.72 -8.47 5.23 -61.25 -0.32 -8.79 16 9 C 0.13 1.71 5.07 -4.03 -0.02 1.69 16 10 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 11 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 13 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 14 N -0.73 -18.22 5.33 -59.91 -0.32 -18.54 16 15 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.07 -0.67 9.32 -39.14 -0.36 -1.03 16 24 C -0.05 -0.40 6.31 -39.56 -0.25 -0.64 16 25 Cl -0.06 -0.49 27.27 -51.86 -1.41 -1.91 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.08 0.41 6.89 -51.93 -0.36 0.06 16 29 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.14 1.28 7.65 -52.49 -0.40 0.88 16 31 H 0.40 3.88 5.69 -40.82 -0.23 3.65 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 36 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.14 1.06 6.40 -52.49 -0.34 0.73 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -32.47 356.88 -9.13 -41.60 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.70 Total: 6.85 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.54 Total: -6.03 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.08 Total: -54.72 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.41 Total: -1.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.47 -9.13 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.571 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds