Wall clock time and date at job start Tue Mar 31 2020 09:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99966 * 2 1 4 4 C 1.50706 * 109.47014 * 270.00025 * 3 2 1 5 5 C 1.38260 * 119.99502 * 269.72610 * 4 3 2 6 6 C 1.38219 * 120.02473 * 179.77093 * 5 4 3 7 7 C 1.38242 * 120.01314 * 0.50308 * 6 5 4 8 8 C 1.38324 * 119.98389 * 359.75043 * 7 6 5 9 9 Cl 1.73606 * 120.01126 * 180.02562 * 8 7 6 10 10 C 1.38196 * 119.98798 * 89.99957 * 4 3 2 11 11 C 1.34773 * 120.00035 * 180.02562 * 2 1 3 12 12 O 1.21282 * 120.00175 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00255 * 359.97438 * 11 2 1 14 14 H 1.08999 * 109.46951 * 39.99730 * 13 11 2 15 15 N 1.46898 * 109.47415 * 159.99940 * 13 11 2 16 16 C 1.52999 * 109.46873 * 280.00059 * 13 11 2 17 17 C 1.52997 * 109.47077 * 174.99461 * 16 13 11 18 18 C 1.50703 * 109.47259 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00027 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99754 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00443 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99721 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47023 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46952 * 120.00033 * 22 20 18 25 25 H 1.48498 * 109.47291 * 240.00530 * 22 20 18 26 26 H 1.08994 * 109.47527 * 89.99944 * 1 2 3 27 27 H 1.09004 * 109.46894 * 210.00539 * 1 2 3 28 28 H 1.09008 * 109.47345 * 329.99457 * 1 2 3 29 29 H 1.09000 * 109.46864 * 150.00833 * 3 2 1 30 30 H 1.09000 * 109.47078 * 30.00086 * 3 2 1 31 31 H 1.08002 * 119.98631 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.99441 * 180.25486 * 6 5 4 33 33 H 1.08002 * 120.00696 * 179.72488 * 7 6 5 34 34 H 1.07999 * 120.01005 * 359.95669 * 10 4 3 35 35 H 1.00905 * 110.99917 * 296.04852 * 15 13 11 36 36 H 1.00895 * 110.99898 * 59.99682 * 15 13 11 37 37 H 1.08996 * 109.47206 * 294.99566 * 16 13 11 38 38 H 1.08999 * 109.47106 * 54.99656 * 16 13 11 39 39 H 1.09000 * 109.47631 * 300.00288 * 17 16 13 40 40 H 1.08999 * 109.46993 * 60.00125 * 17 16 13 41 41 H 0.96993 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 6 3.6035 1.3093 -2.0706 6 6 3.8322 1.7040 -3.3754 7 6 2.9112 2.5021 -4.0279 8 6 1.7581 2.9014 -3.3766 9 17 0.6007 3.9032 -4.1956 10 6 1.5271 2.5017 -2.0721 11 6 2.1388 -1.1672 -0.0005 12 8 3.3516 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.5217 -2.3932 -0.6607 15 7 2.2674 -3.5470 -0.4748 16 6 0.9140 -2.7890 1.4202 17 6 0.0441 -4.0474 1.4002 18 6 -0.4197 -4.3598 2.7997 19 1 -0.1239 -3.7241 3.6211 20 6 -1.2216 -5.4572 3.0313 21 7 -1.5815 -6.2316 2.0312 22 14 -1.7959 -5.8447 4.7661 23 1 -1.2568 -4.8280 5.7047 24 1 -3.2801 -5.8230 4.8127 25 1 -1.3079 -7.1908 5.1600 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 3.1499 1.1384 0.5137 30 1 1.6084 2.0284 0.5138 31 1 4.3252 0.6891 -1.5599 32 1 4.7326 1.3921 -3.8839 33 1 3.0922 2.8142 -5.0459 34 1 0.6268 2.8128 -1.5632 35 1 2.5407 -3.3937 -1.4339 36 1 3.0762 -3.6403 0.1211 37 1 1.7795 -2.9558 2.0614 38 1 0.3325 -1.9514 1.8053 39 1 -0.8214 -3.8808 0.7590 40 1 0.6256 -4.8851 1.0152 41 1 -2.1459 -7.0034 2.1941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424079708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:23 Heat of formation + Delta-G solvation = -46.533779 kcal Electronic energy + Delta-G solvation = -22979.445479 eV Core-core repulsion = 19497.728151 eV Total energy + Delta-G solvation = -3481.717328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42030 -40.16046 -37.56581 -36.87205 -36.67741 -34.82190 -32.88917 -31.92431 -31.74091 -28.80538 -28.00867 -26.97181 -24.89353 -23.68022 -22.76064 -21.90554 -20.23380 -18.56730 -18.28920 -17.95525 -17.34296 -16.95651 -16.62755 -16.44623 -16.35660 -15.91221 -15.43857 -14.80403 -14.75907 -14.42204 -14.28504 -14.22265 -13.85846 -13.74625 -13.41360 -13.37607 -13.01967 -12.79039 -12.56568 -12.47731 -12.45705 -12.29898 -12.17815 -11.87398 -11.68560 -11.62533 -11.20353 -10.96821 -10.48465 -10.05296 -9.79626 -9.71648 -9.53934 -8.12652 -6.22748 0.08832 0.20673 1.10486 1.42345 1.43466 1.50278 1.55904 2.00935 2.45541 2.68820 3.20624 3.47867 3.65207 3.68224 3.82472 4.05562 4.10382 4.16812 4.25483 4.30684 4.32793 4.42512 4.59427 4.68728 4.70662 4.75572 4.89858 4.90664 5.01546 5.16945 5.26799 5.31830 5.44963 5.50959 5.59146 5.76606 5.85539 6.00082 6.08079 6.29358 6.31998 6.50746 6.96245 7.06315 7.45533 8.98735 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.002693 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.720170 B =10394.679148 C =10886.962027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.151 3.849 4 C -0.098 4.098 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.048 4.048 9 Cl -0.070 7.070 10 C -0.097 4.097 11 C 0.489 3.511 12 O -0.573 6.573 13 C 0.085 3.915 14 H 0.103 0.897 15 N -0.819 5.819 16 C -0.081 4.081 17 C 0.040 3.960 18 C -0.540 4.540 19 H 0.056 0.944 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.282 1.282 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.345 0.655 36 H 0.345 0.655 37 H 0.041 0.959 38 H 0.071 0.929 39 H -0.006 1.006 40 H 0.004 0.996 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 22.164 -11.216 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.335 5.335 3 C 0.028 3.972 4 C -0.100 4.100 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.074 4.074 9 Cl -0.041 7.041 10 C -0.117 4.117 11 C 0.276 3.724 12 O -0.453 6.453 13 C -0.030 4.030 14 H 0.121 0.879 15 N -0.348 5.348 16 C -0.120 4.120 17 C 0.003 3.997 18 C -0.579 4.579 19 H 0.074 0.926 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.784 3.216 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.208 1.208 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.012 0.988 40 H 0.022 0.978 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.515 21.613 -11.172 25.187 hybrid contribution 0.260 0.201 0.453 0.560 sum 6.775 21.814 -10.718 25.231 Atomic orbital electron populations 1.22205 0.77469 1.05153 1.03104 1.48018 1.08141 1.05054 1.72329 1.20502 0.98857 0.85472 0.92319 1.20235 0.94598 0.97775 0.97368 1.21397 0.97333 0.98415 0.95409 1.21374 1.00023 0.97200 0.94366 1.21327 0.92511 0.97974 1.01192 1.21056 0.93160 0.99005 0.94184 1.98375 1.58965 1.67938 1.78844 1.21089 0.99974 0.97649 0.92945 1.22334 0.88325 0.87292 0.74469 1.90603 1.15083 1.87912 1.51698 1.21627 0.96182 0.85667 0.99549 0.87901 1.58980 1.24014 1.44295 1.07504 1.21423 0.98911 0.99422 0.92202 1.18816 0.93272 0.92812 0.94781 1.21748 1.30301 1.10662 0.95150 0.92565 1.25892 0.96562 0.96186 1.00976 1.70110 1.37325 1.16732 1.32872 0.85500 0.78051 0.78069 0.80008 1.18727 1.20308 1.20835 0.91524 0.90756 0.87963 0.90130 0.86561 0.86179 0.83260 0.83320 0.83435 0.84238 0.84106 0.93984 0.91070 0.98752 0.97793 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 9.89 127.77 1.26 2.44 16 2 N -0.60 -13.91 2.86 -851.12 -2.43 -16.35 16 3 C 0.15 2.89 5.58 85.63 0.48 3.37 16 4 C -0.10 -1.89 5.46 -19.87 -0.11 -1.99 16 5 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 6 C -0.11 -1.88 10.05 22.27 0.22 -1.66 16 7 C -0.11 -1.79 9.83 22.29 0.22 -1.57 16 8 C -0.05 -0.82 6.32 22.32 0.14 -0.68 16 9 Cl -0.07 -1.13 28.96 -2.72 -0.08 -1.21 16 10 C -0.10 -1.65 9.49 22.29 0.21 -1.44 16 11 C 0.49 14.61 6.91 87.66 0.61 15.22 16 12 O -0.57 -19.58 15.38 -3.03 -0.05 -19.63 16 13 C 0.09 2.82 2.31 44.17 0.10 2.92 16 14 H 0.10 3.27 7.21 -2.39 -0.02 3.25 16 15 N -0.82 -27.80 8.44 -171.80 -1.45 -29.25 16 16 C -0.08 -3.21 4.45 30.59 0.14 -3.08 16 17 C 0.04 2.07 4.86 29.85 0.15 2.22 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 19 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 22 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.70 4.83 -2.39 -0.01 1.69 16 28 H 0.10 1.31 7.89 -2.38 -0.02 1.29 16 29 H 0.08 1.79 7.36 -2.39 -0.02 1.77 16 30 H 0.12 1.52 7.84 -2.39 -0.02 1.50 16 31 H 0.12 2.79 7.60 -2.91 -0.02 2.77 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.34 10.16 9.06 -89.69 -0.81 9.35 16 36 H 0.35 11.90 8.58 -89.70 -0.77 11.13 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.57 6.43 -2.39 -0.02 2.55 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.00 0.21 7.75 -2.39 -0.02 0.19 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -68.15 358.41 2.11 -66.04 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.52 Total: 26.12 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.33 Total: -15.72 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -3.60 Total: -101.66 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -68.15 2.11 -66.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424079708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.506 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds