Wall clock time and date at job start Tue Mar 31 2020 09:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34353 * 125.69626 * 2 1 4 4 C 1.38038 * 107.52861 * 180.02562 * 3 2 1 5 5 C 1.43202 * 126.44067 * 179.97438 * 4 3 2 6 6 N 4.70759 * 152.85141 * 359.97438 * 2 1 3 7 7 C 1.41804 * 107.12484 * 0.02562 * 4 3 2 8 8 N 1.39822 * 126.06079 * 179.97438 * 7 4 3 9 9 C 1.34774 * 120.00347 * 179.97438 * 8 7 4 10 10 O 1.21294 * 119.99843 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00256 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37630 * 120.12796 * 265.00188 * 12 11 9 14 14 C 1.38619 * 120.24694 * 180.29070 * 13 12 11 15 15 C 1.38655 * 120.49866 * 359.44683 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55480 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 N 1.30946 * 107.88056 * 0.22466 * 7 4 3 27 27 H 1.09004 * 109.46536 * 89.99890 * 1 2 3 28 28 H 1.09001 * 109.47037 * 209.99673 * 1 2 3 29 29 H 1.08992 * 109.47033 * 330.00866 * 1 2 3 30 30 H 1.08004 * 126.24004 * 0.04016 * 3 2 1 31 31 H 0.97004 * 120.00167 * 359.97438 * 8 7 4 32 32 H 1.09003 * 109.47324 * 59.99832 * 11 9 8 33 33 H 1.09000 * 109.47440 * 299.99911 * 11 9 8 34 34 H 1.07995 * 119.88141 * 0.02562 * 13 12 11 35 35 H 1.07999 * 119.74930 * 179.69896 * 14 13 12 36 36 H 1.08004 * 119.87487 * 180.29445 * 15 14 13 37 37 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 38 38 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0911 0.0000 4 6 3.5605 0.6607 -0.0006 5 6 4.7279 1.4901 -0.0013 6 7 5.6540 2.1481 -0.0010 7 6 3.5347 -0.7571 -0.0016 8 7 4.6499 -1.6006 -0.0029 9 6 4.4833 -2.9380 -0.0032 10 8 3.3659 -3.4099 -0.0018 11 6 5.6852 -3.8471 -0.0040 12 6 5.2288 -5.2833 -0.0036 13 6 5.1194 -5.9730 1.1824 14 6 4.7056 -7.2960 1.1852 15 6 4.3866 -7.9360 -0.0027 16 6 4.4888 -7.2661 -1.2003 17 6 4.9134 -5.9243 -1.2157 18 6 5.0216 -5.2257 -2.4401 19 1 4.9307 -4.1496 -2.4578 20 6 5.2464 -5.9284 -3.6292 21 7 5.6718 -7.1649 -3.5879 22 14 4.9395 -5.1008 -5.2756 23 1 4.4650 -3.7119 -5.0505 24 1 6.2010 -5.0727 -6.0583 25 1 3.9078 -5.8604 -6.0266 26 7 2.2814 -1.1364 -0.0064 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9141 2.1179 0.0006 31 1 5.5435 -1.2232 -0.0036 32 1 6.2854 -3.6567 0.8857 33 1 6.2845 -3.6562 -0.8943 34 1 5.3608 -5.4830 2.1140 35 1 4.6272 -7.8310 2.1200 36 1 4.0608 -8.9657 0.0116 37 1 4.2438 -7.7677 -2.1247 38 1 5.8273 -7.6521 -4.4121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776974708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:13 Heat of formation + Delta-G solvation = 98.722001 kcal Electronic energy + Delta-G solvation = -24240.226269 eV Core-core repulsion = 20663.700210 eV Total energy + Delta-G solvation = -3576.526059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55001 -39.26233 -37.36494 -36.50904 -34.83826 -33.61037 -32.54905 -31.59885 -30.52342 -29.44619 -27.53166 -26.44415 -25.00081 -22.64177 -22.28115 -20.91951 -19.92814 -19.41169 -18.78430 -17.16884 -16.70351 -16.34155 -15.97079 -15.64216 -15.36670 -14.72944 -14.48489 -14.06014 -13.78905 -13.64923 -13.38873 -13.34602 -13.22908 -12.78149 -12.61710 -12.54202 -12.45504 -11.75124 -11.55715 -11.28595 -11.11033 -10.98406 -10.73735 -10.68022 -10.65602 -10.37205 -9.47782 -9.37429 -9.28607 -9.15076 -9.00189 -8.33804 -7.30877 -7.28916 -6.72907 -4.33535 1.29024 2.06364 2.10739 2.60975 2.77467 2.93561 3.08951 3.14872 3.24564 3.28037 3.30384 3.61793 3.95489 4.06335 4.41713 4.49973 4.67230 4.93107 5.06892 5.19014 5.25130 5.37989 5.69622 5.76596 5.97377 6.07731 6.29261 6.41169 6.52178 6.59101 6.74506 6.79849 7.09931 7.17199 7.30653 7.43038 7.53054 7.65486 7.86150 7.94153 8.07835 8.14446 8.32241 8.63531 8.68115 8.92532 9.02248 10.21273 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004287 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.937014 B = 6529.486259 C = 7273.951399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.355 5.355 3 C 0.134 3.866 4 C -0.218 4.218 5 C 0.295 3.705 6 N -0.438 5.438 7 C 0.353 3.647 8 N -0.650 5.650 9 C 0.506 3.494 10 O -0.464 6.464 11 C -0.066 4.066 12 C -0.186 4.186 13 C -0.078 4.078 14 C -0.240 4.240 15 C -0.105 4.105 16 C -0.158 4.158 17 C 0.131 3.869 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.078 3.922 21 N -0.794 5.794 22 Si 0.901 3.099 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.272 1.272 26 N -0.269 5.269 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.190 0.810 31 H 0.417 0.583 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 14.136 4.557 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.132 5.132 3 C -0.022 4.022 4 C -0.236 4.236 5 C -0.020 4.020 6 N -0.116 5.116 7 C 0.092 3.908 8 N -0.303 5.303 9 C 0.293 3.707 10 O -0.329 6.329 11 C -0.105 4.105 12 C -0.188 4.188 13 C -0.096 4.096 14 C -0.259 4.259 15 C -0.124 4.124 16 C -0.178 4.178 17 C 0.128 3.872 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.419 5.419 22 Si 0.726 3.274 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.197 1.197 26 N -0.098 5.098 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.207 0.793 31 H 0.253 0.747 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.229 13.441 4.391 15.881 hybrid contribution 0.445 0.956 -0.855 1.358 sum -6.784 14.397 3.536 16.303 Atomic orbital electron populations 1.22020 0.72784 1.05120 1.04182 1.48340 1.07410 1.03477 1.53974 1.22782 0.88816 0.94207 0.96431 1.15721 0.88694 0.89436 1.29765 1.24427 0.92260 0.93005 0.92322 1.81282 1.09702 1.08422 1.12182 1.19302 0.88505 0.87113 0.95840 1.43580 1.06158 1.06093 1.74425 1.21751 0.93216 0.80451 0.75270 1.90785 1.25783 1.73702 1.42673 1.20265 0.94003 0.92836 1.03440 1.18992 1.12642 0.93146 0.94043 1.20300 0.99545 0.94410 0.95382 1.20303 1.13597 0.95715 0.96276 1.20686 1.00574 0.97648 0.93497 1.21290 1.04059 0.96037 0.96380 1.17332 0.86839 0.91687 0.91328 1.19503 1.43346 0.94751 0.90937 0.90769 1.25864 0.92246 0.94640 1.01214 1.69824 1.31641 1.10432 1.30024 0.86371 0.78821 0.80758 0.81479 1.18506 1.19986 1.19698 1.78203 0.98993 1.03481 1.29099 0.89959 0.88407 0.88971 0.79272 0.74657 0.90015 0.88045 0.89678 0.89641 0.89576 0.86539 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.44 59.85 0.68 1.28 16 2 N -0.35 -3.80 3.98 -67.57 -0.27 -4.07 16 3 C 0.13 1.15 11.47 -16.52 -0.19 0.96 16 4 C -0.22 -2.57 5.98 -106.68 -0.64 -3.21 16 5 C 0.29 3.63 15.62 -22.47 -0.35 3.28 16 6 N -0.44 -6.13 18.54 41.84 0.78 -5.35 16 7 C 0.35 5.40 7.81 -154.40 -1.21 4.20 16 8 N -0.65 -10.13 5.44 -10.92 -0.06 -10.19 16 9 C 0.51 9.86 7.43 -10.99 -0.08 9.78 16 10 O -0.46 -11.02 14.76 5.55 0.08 -10.94 16 11 C -0.07 -1.26 5.18 -29.04 -0.15 -1.41 16 12 C -0.19 -4.42 4.43 -103.92 -0.46 -4.88 16 13 C -0.08 -1.78 9.66 -39.66 -0.38 -2.17 16 14 C -0.24 -5.54 10.05 -39.29 -0.39 -5.94 16 15 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 16 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 16 17 C 0.13 3.46 5.56 -106.83 -0.59 2.87 16 18 C -0.46 -11.94 8.14 -37.75 -0.31 -12.25 16 19 H 0.07 1.90 6.68 -52.48 -0.35 1.55 16 20 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 21 N -0.79 -20.44 10.97 55.55 0.61 -19.83 16 22 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 N -0.27 -4.41 10.73 31.62 0.34 -4.07 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.19 0.67 8.06 -52.48 -0.42 0.25 16 31 H 0.42 5.14 8.61 -40.82 -0.35 4.79 16 32 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.10 1.89 7.06 -51.93 -0.37 1.53 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.12 3.19 6.22 -52.49 -0.33 2.86 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -34.80 343.52 -7.18 -41.98 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.91 Total: 6.44 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -4.90 Total: -13.15 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 1.40 Total: -43.51 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.80 -7.18 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776974708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.703 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds