Wall clock time and date at job start Tue Mar 31 2020 09:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34353 * 125.69626 * 2 1 4 4 C 1.38038 * 107.52861 * 180.02562 * 3 2 1 5 5 C 1.43202 * 126.44067 * 179.97438 * 4 3 2 6 6 N 4.70759 * 152.85141 * 359.97438 * 2 1 3 7 7 C 1.41804 * 107.12484 * 0.02562 * 4 3 2 8 8 N 1.39822 * 126.06079 * 179.97438 * 7 4 3 9 9 C 1.34774 * 120.00347 * 179.97438 * 8 7 4 10 10 O 1.21294 * 119.99843 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00256 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37630 * 120.12796 * 265.00188 * 12 11 9 14 14 C 1.38619 * 120.24694 * 180.29070 * 13 12 11 15 15 C 1.38655 * 120.49866 * 359.44683 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55480 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 N 1.30946 * 107.88056 * 0.22466 * 7 4 3 27 27 H 1.09004 * 109.46536 * 89.99890 * 1 2 3 28 28 H 1.09001 * 109.47037 * 209.99673 * 1 2 3 29 29 H 1.08992 * 109.47033 * 330.00866 * 1 2 3 30 30 H 1.08004 * 126.24004 * 0.04016 * 3 2 1 31 31 H 0.97004 * 120.00167 * 359.97438 * 8 7 4 32 32 H 1.09003 * 109.47324 * 59.99832 * 11 9 8 33 33 H 1.09000 * 109.47440 * 299.99911 * 11 9 8 34 34 H 1.07995 * 119.88141 * 0.02562 * 13 12 11 35 35 H 1.07999 * 119.74930 * 179.69896 * 14 13 12 36 36 H 1.08004 * 119.87487 * 180.29445 * 15 14 13 37 37 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 38 38 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0911 0.0000 4 6 3.5605 0.6607 -0.0006 5 6 4.7279 1.4901 -0.0013 6 7 5.6540 2.1481 -0.0010 7 6 3.5347 -0.7571 -0.0016 8 7 4.6499 -1.6006 -0.0029 9 6 4.4833 -2.9380 -0.0032 10 8 3.3659 -3.4099 -0.0018 11 6 5.6852 -3.8471 -0.0040 12 6 5.2288 -5.2833 -0.0036 13 6 5.1194 -5.9730 1.1824 14 6 4.7056 -7.2960 1.1852 15 6 4.3866 -7.9360 -0.0027 16 6 4.4888 -7.2661 -1.2003 17 6 4.9134 -5.9243 -1.2157 18 6 5.0216 -5.2257 -2.4401 19 1 4.9307 -4.1496 -2.4578 20 6 5.2464 -5.9284 -3.6292 21 7 5.6718 -7.1649 -3.5879 22 14 4.9395 -5.1008 -5.2756 23 1 4.4650 -3.7119 -5.0505 24 1 6.2010 -5.0727 -6.0583 25 1 3.9078 -5.8604 -6.0266 26 7 2.2814 -1.1364 -0.0064 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9141 2.1179 0.0006 31 1 5.5435 -1.2232 -0.0036 32 1 6.2854 -3.6567 0.8857 33 1 6.2845 -3.6562 -0.8943 34 1 5.3608 -5.4830 2.1140 35 1 4.6272 -7.8310 2.1200 36 1 4.0608 -8.9657 0.0116 37 1 4.2438 -7.7677 -2.1247 38 1 5.8273 -7.6521 -4.4121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776974708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:12 Heat of formation + Delta-G solvation = 76.926340 kcal Electronic energy + Delta-G solvation = -24241.171399 eV Core-core repulsion = 20663.700210 eV Total energy + Delta-G solvation = -3577.471189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.117 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.50841 -40.73584 -39.13147 -37.50251 -36.08405 -35.49857 -33.74918 -33.03374 -31.49759 -31.33226 -28.90932 -27.57239 -26.80345 -23.71403 -23.36799 -22.80839 -21.49353 -20.67875 -19.87500 -19.04900 -17.76756 -17.72417 -17.25355 -16.88424 -16.48950 -16.19606 -16.12752 -15.43198 -15.11994 -14.95326 -14.82038 -14.56888 -14.38384 -14.17748 -13.59555 -13.52246 -13.41399 -13.36892 -13.28877 -12.92192 -12.76888 -12.70309 -12.49770 -12.12833 -11.82340 -11.76407 -11.31868 -11.21311 -11.03220 -10.80844 -9.99829 -9.36356 -9.21643 -9.17002 -8.60140 -6.29390 0.54545 0.94398 0.96252 1.10644 1.31718 1.34709 1.47411 1.51433 1.65796 1.92642 2.15183 2.19127 2.60157 2.78104 3.10465 3.65973 3.72574 3.95743 4.09973 4.33660 4.37451 4.41152 4.53745 4.56314 4.60695 4.70798 4.75413 4.79828 4.83386 5.06216 5.20161 5.37633 5.55114 5.56537 5.77348 5.93847 6.02206 6.09491 6.17738 6.22936 6.42314 6.59318 6.73199 6.78593 6.99387 7.11508 7.26185 8.36518 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004287 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.937014 B = 6529.486259 C = 7273.951399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.352 5.352 3 C 0.172 3.828 4 C -0.234 4.234 5 C 0.317 3.683 6 N -0.471 5.471 7 C 0.330 3.670 8 N -0.640 5.640 9 C 0.512 3.488 10 O -0.515 6.515 11 C -0.065 4.065 12 C -0.190 4.190 13 C -0.088 4.088 14 C -0.242 4.242 15 C -0.116 4.116 16 C -0.192 4.192 17 C 0.099 3.901 18 C -0.481 4.481 19 H 0.069 0.931 20 C 0.039 3.961 21 N -0.824 5.824 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.260 1.260 25 H -0.268 1.268 26 N -0.330 5.330 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.250 0.750 31 H 0.430 0.570 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 16.852 5.240 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.129 5.129 3 C 0.015 3.985 4 C -0.252 4.252 5 C 0.003 3.997 6 N -0.150 5.150 7 C 0.071 3.929 8 N -0.292 5.292 9 C 0.300 3.700 10 O -0.385 6.385 11 C -0.105 4.105 12 C -0.192 4.192 13 C -0.106 4.106 14 C -0.261 4.261 15 C -0.134 4.134 16 C -0.212 4.212 17 C 0.096 3.904 18 C -0.511 4.511 19 H 0.087 0.913 20 C -0.176 4.176 21 N -0.451 5.451 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.185 1.185 25 H -0.193 1.193 26 N -0.159 5.159 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.266 0.734 31 H 0.270 0.730 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.935 16.184 5.087 18.728 hybrid contribution 0.557 0.155 -0.940 1.103 sum -7.378 16.338 4.147 18.401 Atomic orbital electron populations 1.22460 0.70194 1.06842 1.05467 1.48669 1.08707 1.02671 1.52876 1.23650 0.87015 0.95792 0.92023 1.15774 0.89944 0.87711 1.31785 1.24345 0.91819 0.92285 0.91250 1.81311 1.10370 1.09586 1.13683 1.19502 0.88134 0.88344 0.96948 1.43197 1.07411 1.05127 1.73490 1.21583 0.92247 0.81659 0.74498 1.90762 1.27385 1.74957 1.45428 1.20286 0.94339 0.90499 1.05344 1.19465 1.10957 0.95313 0.93490 1.20739 0.98877 0.94554 0.96435 1.20717 1.12269 0.96157 0.96932 1.20957 1.00433 0.98663 0.93347 1.21293 1.06408 0.96904 0.96582 1.17708 0.87760 0.92116 0.92778 1.19620 1.44971 0.94599 0.91921 0.91287 1.26603 0.91603 0.95175 1.04226 1.69878 1.32354 1.11622 1.31207 0.85376 0.79134 0.79218 0.77332 1.19012 1.18460 1.19276 1.78060 1.00154 1.07274 1.30380 0.88889 0.89882 0.84061 0.73364 0.73046 0.86166 0.87918 0.86433 0.86668 0.87684 0.88569 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.44 127.77 1.46 2.26 16 2 N -0.35 -6.66 3.98 -367.70 -1.46 -8.12 16 3 C 0.17 2.27 11.47 84.26 0.97 3.24 16 4 C -0.23 -5.02 5.98 -21.20 -0.13 -5.14 16 5 C 0.32 7.19 15.62 88.33 1.38 8.56 16 6 N -0.47 -12.47 18.54 19.00 0.35 -12.12 16 7 C 0.33 9.91 7.81 133.87 1.05 10.95 16 8 N -0.64 -19.81 5.44 -306.84 -1.67 -21.47 16 9 C 0.51 20.16 7.43 87.66 0.65 20.81 16 10 O -0.52 -25.22 14.76 -3.07 -0.05 -25.27 16 11 C -0.07 -2.48 5.18 29.10 0.15 -2.33 16 12 C -0.19 -9.12 4.43 -19.41 -0.09 -9.21 16 13 C -0.09 -3.94 9.66 22.22 0.21 -3.72 16 14 C -0.24 -10.98 10.05 22.46 0.23 -10.75 16 15 C -0.12 -5.71 10.02 22.22 0.22 -5.48 16 16 C -0.19 -10.67 8.68 22.73 0.20 -10.48 16 17 C 0.10 5.42 5.56 -21.29 -0.12 5.30 16 18 C -0.48 -26.21 8.14 23.46 0.19 -26.02 16 19 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 20 C 0.04 1.99 5.16 85.26 0.44 2.43 16 21 N -0.82 -43.97 10.97 21.82 0.24 -43.73 16 22 Si 0.97 39.90 29.59 68.60 2.03 41.93 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 N -0.33 -10.69 10.73 -53.88 -0.58 -11.27 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.25 0.11 8.06 -2.91 -0.02 0.09 16 31 H 0.43 10.36 8.61 -92.71 -0.80 9.57 16 32 H 0.12 3.54 8.05 -2.39 -0.02 3.52 16 33 H 0.10 3.87 7.06 -2.39 -0.02 3.85 16 34 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 36 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 37 H 0.10 5.59 6.22 -2.91 -0.02 5.57 16 38 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 Total: -1.00 -81.08 343.52 6.01 -75.07 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.33 Total: 24.56 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 6.82 Total: -19.58 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.12 Total: -96.71 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -81.08 6.01 -75.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776974708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.001 kcal (2) G-P(sol) polarization free energy of solvation -81.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds