Wall clock time and date at job start Tue Mar 31 2020 10:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 N 1.30007 * 127.33837 * 270.02251 * 3 2 1 5 5 O 1.20651 * 112.32088 * 179.67950 * 4 3 2 6 6 C 1.33464 * 113.17891 * 0.50960 * 5 4 3 7 7 C 1.37443 * 106.32483 * 359.51399 * 6 5 4 8 8 C 1.47255 * 128.57358 * 180.24766 * 7 6 5 9 9 O 1.21529 * 119.99886 * 180.02562 * 8 7 6 10 10 O 1.34767 * 120.00103 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00042 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47237 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99445 * 0.02562 * 12 11 10 14 14 N 1.34767 * 120.00222 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00041 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.46933 * 89.99907 * 15 14 12 17 17 C 1.46504 * 120.00301 * 179.97438 * 14 12 11 18 18 C 1.50704 * 109.47122 * 89.99974 * 17 14 12 19 19 H 1.08001 * 119.99512 * 0.02562 * 18 17 14 20 20 C 1.37868 * 120.00160 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00057 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00263 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47210 * 59.99635 * 22 20 18 24 24 H 1.48495 * 109.47476 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47181 * 299.99930 * 22 20 18 26 26 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47231 * 300.00192 * 1 2 3 28 28 H 1.09000 * 109.46804 * 60.00544 * 1 2 3 29 29 H 1.09000 * 109.47667 * 239.99650 * 2 1 3 30 30 H 1.09004 * 109.47244 * 119.99620 * 2 1 3 31 31 H 1.08002 * 126.84109 * 179.78327 * 6 5 4 32 32 H 1.09003 * 109.47137 * 300.00046 * 11 10 8 33 33 H 1.08999 * 109.47493 * 59.99472 * 11 10 8 34 34 H 1.09007 * 109.46830 * 210.00104 * 15 14 12 35 35 H 1.08997 * 109.46725 * 329.99927 * 15 14 12 36 36 H 1.09004 * 109.46368 * 179.97438 * 16 15 14 37 37 H 1.08995 * 109.47380 * 299.99433 * 16 15 14 38 38 H 1.08997 * 109.47399 * 60.00432 * 16 15 14 39 39 H 1.08995 * 109.47453 * 210.00056 * 17 14 12 40 40 H 1.09001 * 109.46694 * 330.00241 * 17 14 12 41 41 H 0.96998 * 120.00476 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2947 2.1644 -1.0336 5 8 2.6773 3.2651 -0.7210 6 6 2.7463 3.4418 0.6001 7 6 2.3298 2.2623 1.1698 8 6 2.2110 1.9242 2.5981 9 8 1.8222 0.8221 2.9313 10 8 2.5334 2.8370 3.5357 11 6 2.3925 2.4344 4.9236 12 6 2.7961 3.5756 5.8212 13 8 3.1656 4.6251 5.3386 14 7 2.7454 3.4303 7.1600 15 6 2.2984 2.1627 7.7429 16 6 3.5031 1.2416 7.9452 17 6 3.1383 4.5396 8.0327 18 6 1.9335 5.3939 8.3326 19 1 0.9713 5.1360 7.9153 20 6 2.0596 6.5045 9.1397 21 7 3.2311 6.8182 9.6483 22 14 0.5661 7.5630 9.5120 23 1 -0.4663 6.7405 10.1923 24 1 0.9646 8.6881 10.3954 25 1 0.0129 8.1021 8.2437 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0619 4.3352 1.1184 32 1 1.3544 2.1663 5.1205 33 1 3.0331 1.5745 5.1193 34 1 1.8211 2.3532 8.7042 35 1 1.5849 1.6856 7.0712 36 1 3.1705 0.2987 8.3794 37 1 3.9804 1.0511 6.9840 38 1 4.2166 1.7188 8.6170 39 1 3.5436 4.1435 8.9637 40 1 3.8966 5.1432 7.5339 41 1 3.3200 7.5998 10.2158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860435708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:39 Heat of formation + Delta-G solvation = -81.984007 kcal Electronic energy + Delta-G solvation = -25403.323545 eV Core-core repulsion = 21479.359815 eV Total energy + Delta-G solvation = -3923.963730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.09481 -41.68627 -40.50726 -37.73221 -36.97320 -36.28699 -34.92994 -33.56439 -32.32191 -31.73028 -30.66385 -28.52125 -26.45976 -25.26773 -24.79550 -24.10371 -22.30899 -21.91646 -20.31614 -19.42359 -18.88222 -18.62327 -18.43650 -17.95043 -17.72666 -17.35529 -16.96083 -16.27777 -16.01478 -15.66650 -15.25372 -14.84112 -14.70951 -14.59058 -14.40058 -13.94447 -13.81440 -13.67405 -13.58872 -13.26831 -13.08116 -12.83794 -12.65411 -12.56129 -12.50917 -12.21906 -12.12181 -12.05745 -11.80420 -11.78892 -11.72495 -11.16499 -10.93848 -10.73030 -10.63261 -9.53479 -8.22239 -6.36753 -0.22929 0.57463 1.00148 1.38621 1.42344 1.49408 1.61243 1.67886 1.98715 2.33512 2.45712 2.84798 3.08098 3.12610 3.41853 3.63476 3.76750 3.96684 3.98265 4.16983 4.18829 4.28548 4.30892 4.39595 4.52699 4.60709 4.79771 4.88374 4.94377 4.96341 5.02956 5.05247 5.12686 5.21630 5.26649 5.37985 5.54958 5.80272 6.05071 6.42093 6.62918 6.72699 7.04020 7.21826 7.37443 8.84926 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.002998 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.425687 B = 9337.312176 C = 9998.906048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.078 3.922 4 N -0.372 5.372 5 O 0.096 5.904 6 C 0.062 3.938 7 C -0.278 4.278 8 C 0.552 3.448 9 O -0.509 6.509 10 O -0.340 6.340 11 C 0.065 3.935 12 C 0.500 3.500 13 O -0.575 6.575 14 N -0.595 5.595 15 C 0.093 3.907 16 C -0.164 4.164 17 C 0.264 3.736 18 C -0.546 4.546 19 H 0.055 0.945 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.277 1.277 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.265 0.735 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.029 0.971 40 H 0.001 0.999 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -15.321 -15.348 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.085 4.085 4 N -0.081 5.081 5 O 0.042 5.958 6 C -0.020 4.020 7 C -0.284 4.284 8 C 0.397 3.603 9 O -0.399 6.399 10 O -0.255 6.255 11 C -0.012 4.012 12 C 0.287 3.713 13 O -0.455 6.455 14 N -0.327 5.327 15 C -0.029 4.029 16 C -0.222 4.222 17 C 0.143 3.857 18 C -0.585 4.585 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.203 1.203 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.281 0.719 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.248 -15.114 -16.650 22.720 hybrid contribution -0.364 0.942 1.533 1.836 sum -3.612 -14.172 -15.116 21.033 Atomic orbital electron populations 1.21656 0.92797 1.03673 1.01602 1.20196 0.97365 0.86143 1.05120 1.25205 0.98131 0.99619 0.85529 1.73715 1.17819 0.92958 1.23617 1.84597 1.61733 1.26046 1.23472 1.27345 0.91682 1.00112 0.82814 1.21267 1.17897 0.97728 0.91480 1.19606 0.73661 0.81983 0.85065 1.90828 1.43731 1.22745 1.82554 1.86570 1.78964 1.43501 1.16497 1.22889 1.05489 0.96090 0.76699 1.20487 0.78803 0.88670 0.83339 1.90678 1.48804 1.30756 1.75274 1.48196 1.64114 1.15685 1.04691 1.21876 0.97737 0.82558 1.00686 1.22179 0.97834 0.99965 1.02198 1.18778 0.94796 0.84021 0.88129 1.21691 0.95608 1.11106 1.30054 0.92633 1.25821 0.99166 0.98508 0.95441 1.70034 1.25032 1.27775 1.33851 0.85494 0.79233 0.78222 0.78036 1.18502 1.20485 1.20285 0.89418 0.93546 0.92541 0.88162 0.88578 0.71905 0.86110 0.85676 0.90105 0.88209 0.88456 0.92268 0.93787 0.95347 0.98105 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.05 -0.86 6.20 29.85 0.18 -0.67 16 3 C 0.08 1.67 6.84 45.17 0.31 1.98 16 4 N -0.37 -8.16 12.01 -44.74 -0.54 -8.70 16 5 O 0.10 1.86 11.06 77.25 0.85 2.71 16 6 C 0.06 1.09 12.24 67.63 0.83 1.92 16 7 C -0.28 -6.22 6.47 -18.76 -0.12 -6.34 16 8 C 0.55 14.34 7.95 70.19 0.56 14.90 16 9 O -0.51 -13.87 15.49 19.74 0.31 -13.56 16 10 O -0.34 -10.02 9.66 -50.39 -0.49 -10.51 16 11 C 0.06 1.84 4.51 71.24 0.32 2.16 16 12 C 0.50 20.04 7.75 87.66 0.68 20.72 16 13 O -0.58 -29.00 16.08 15.76 0.25 -28.74 16 14 N -0.59 -23.93 2.46 -826.14 -2.03 -25.96 16 15 C 0.09 2.63 5.93 86.38 0.51 3.14 16 16 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 17 C 0.26 13.72 5.16 85.63 0.44 14.16 16 18 C -0.55 -30.61 9.39 25.60 0.24 -30.37 16 19 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.01 0.56 5.46 84.65 0.46 1.02 16 21 N -0.93 -55.03 13.29 21.44 0.28 -54.74 16 22 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.73 7.11 -2.38 -0.02 1.71 16 31 H 0.27 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.12 2.90 7.40 -2.39 -0.02 2.89 16 33 H 0.13 2.87 7.18 -2.39 -0.02 2.85 16 34 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 35 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 38 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 40 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -75.23 360.87 7.58 -67.65 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.05 Total: 7.71 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.87 Total: 18.18 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.28 Total: -89.40 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: 0.93 Total: -50.10 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.23 7.58 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860435708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.335 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds