Wall clock time and date at job start Tue Mar 31 2020 10:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39898 * 109.47378 * 2 1 4 4 F 1.39902 * 109.46956 * 240.00284 * 2 1 3 5 5 C 1.50694 * 109.47246 * 120.00589 * 2 1 3 6 6 C 1.38361 * 119.85254 * 270.00188 * 5 2 1 7 7 C 1.37958 * 120.14438 * 180.02562 * 6 5 2 8 8 C 1.39573 * 119.85565 * 0.02562 * 7 6 5 9 9 C 1.47847 * 120.14677 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99672 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99677 * 179.97438 * 11 9 8 13 13 C 1.53498 * 114.20393 * 155.00067 * 12 11 9 14 14 N 1.47065 * 87.98675 * 87.71349 * 13 12 11 15 15 C 1.36935 * 136.05778 * 207.07950 * 14 13 12 16 16 H 1.07997 * 119.99961 * 6.77313 * 15 14 13 17 17 C 1.38812 * 119.99962 * 186.76980 * 15 14 13 18 18 N 1.31618 * 119.99992 * 172.26235 * 17 15 14 19 19 Si 1.86794 * 120.00181 * 352.26315 * 17 15 14 20 20 H 1.48495 * 109.47373 * 175.35665 * 19 17 15 21 21 H 1.48501 * 109.47224 * 295.36298 * 19 17 15 22 22 H 1.48505 * 109.47188 * 55.35894 * 19 17 15 23 23 C 1.47070 * 87.88470 * 27.34556 * 14 13 12 24 24 C 1.39580 * 119.71271 * 0.25776 * 8 7 6 25 25 C 1.37961 * 119.84814 * 359.46918 * 24 8 7 26 26 H 1.09000 * 109.47091 * 299.99838 * 1 2 3 27 27 H 1.09005 * 109.47080 * 59.99511 * 1 2 3 28 28 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.92678 * 0.02562 * 6 5 2 30 30 H 1.08006 * 120.07438 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99850 * 359.97438 * 11 9 8 32 32 H 1.08994 * 113.28499 * 21.93089 * 12 11 9 33 33 H 1.09003 * 113.46903 * 332.93254 * 13 12 11 34 34 H 1.09002 * 113.51847 * 202.50737 * 13 12 11 35 35 H 0.97005 * 119.99783 * 4.88000 * 18 17 15 36 36 H 1.08996 * 113.47141 * 87.43428 * 23 14 13 37 37 H 1.09002 * 113.46180 * 217.88172 * 23 14 13 38 38 H 1.07998 * 120.07566 * 179.72533 * 24 8 7 39 39 H 1.08000 * 119.92808 * 180.28085 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2303 6 6 2.2619 0.0040 2.3928 7 6 2.7223 -0.6403 3.5225 8 6 2.9570 -2.0158 3.4909 9 6 3.4509 -2.7127 4.6976 10 8 3.6539 -2.0875 5.7201 11 7 3.6771 -4.0409 4.6637 12 6 4.1671 -4.7313 5.8593 13 6 3.8208 -6.2258 5.9093 14 7 5.0598 -6.4849 5.1605 15 6 5.5075 -7.4503 4.2987 16 1 4.8321 -8.2168 3.9486 17 6 6.8294 -7.4436 3.8752 18 7 7.3001 -8.4516 3.1718 19 14 7.9401 -6.0042 4.3034 20 1 9.3208 -6.2881 3.8362 21 1 7.4358 -4.7752 3.6397 22 1 7.9469 -5.8047 5.7750 23 6 5.6088 -5.2544 5.7499 24 6 2.7291 -2.7297 2.3133 25 6 2.2633 -2.0742 1.1922 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.0803 1.0683 2.4158 30 1 2.9015 -0.0814 4.4291 31 1 3.5155 -4.5397 3.8476 32 1 3.9581 -4.1929 6.7836 33 1 2.9174 -6.4809 5.3553 34 1 3.8280 -6.6405 6.9174 35 1 6.7065 -9.1647 2.8889 36 1 6.0877 -5.4121 6.7163 37 1 6.2287 -4.6818 5.0600 38 1 2.9130 -3.7934 2.2810 39 1 2.0821 -2.6261 0.2817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031502425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:25 Heat of formation + Delta-G solvation = -43.365082 kcal Electronic energy + Delta-G solvation = -25042.516912 eV Core-core repulsion = 21009.140309 eV Total energy + Delta-G solvation = -4033.376603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.34601 -47.35325 -40.40495 -39.07516 -37.79528 -33.84490 -33.21724 -32.21392 -31.23348 -30.13296 -27.89707 -25.44653 -25.25934 -23.18563 -22.77891 -21.95432 -20.49161 -19.62463 -18.42229 -17.79047 -17.52988 -17.45282 -16.67778 -16.17230 -15.38437 -15.14777 -14.95676 -14.73927 -14.28919 -14.11684 -13.96622 -13.83448 -13.68985 -13.59631 -13.49623 -13.17093 -12.99979 -12.88229 -12.76450 -12.47213 -12.08022 -11.47046 -11.42887 -11.31246 -11.07566 -10.60613 -10.37046 -9.94070 -9.56693 -9.34822 -9.31329 -9.26249 -8.92702 -8.60458 -7.23368 -6.38463 -3.30471 0.40979 1.02984 2.66014 3.18412 3.26966 3.40188 3.41459 3.57350 3.62581 3.69418 4.02408 4.28591 4.53873 4.54194 4.58779 4.65731 4.70433 4.97925 4.99704 5.01575 5.06295 5.29001 5.35075 5.37225 5.39465 5.65045 5.76668 5.84298 5.90802 5.98788 6.04994 6.13736 6.17789 6.25444 6.34321 6.45752 6.87970 7.01623 7.67565 8.16674 8.27911 8.90490 9.43198 10.28412 11.14065 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.003383 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.578184 B = 8274.768776 C = 8971.260855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.336 3.664 3 F -0.194 7.194 4 F -0.193 7.193 5 C -0.138 4.138 6 C -0.097 4.097 7 C -0.061 4.061 8 C -0.110 4.110 9 C 0.556 3.444 10 O -0.541 6.541 11 N -0.688 5.688 12 C 0.097 3.903 13 C 0.114 3.886 14 N -0.628 5.628 15 C -0.310 4.310 16 H 0.083 0.917 17 C -0.021 4.021 18 N -0.932 5.932 19 Si 1.070 2.930 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.085 3.915 24 C -0.083 4.083 25 C -0.093 4.093 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.406 0.594 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.261 0.739 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.138 0.862 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 17.606 -3.796 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.300 3.700 3 F -0.175 7.175 4 F -0.174 7.174 5 C -0.139 4.139 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.113 4.113 9 C 0.342 3.658 10 O -0.420 6.420 11 N -0.337 5.337 12 C -0.009 4.009 13 C -0.013 4.013 14 N -0.357 5.357 15 C -0.436 4.436 16 H 0.101 0.899 17 C -0.220 4.220 18 N -0.574 5.574 19 Si 0.903 3.097 20 H -0.222 1.222 21 H -0.223 1.223 22 H -0.213 1.213 23 C -0.042 4.042 24 C -0.102 4.102 25 C -0.111 4.111 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.156 0.844 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.025 18.384 -3.393 23.371 hybrid contribution -1.395 -0.962 -0.417 1.745 sum -15.421 17.422 -3.810 23.576 Atomic orbital electron populations 1.22774 0.90427 1.05896 1.05520 1.19477 0.93751 0.75032 0.81752 1.93028 1.90652 1.37134 1.96715 1.93042 1.90630 1.80876 1.52853 1.20419 1.03357 0.95256 0.94873 1.20893 0.98647 1.00372 0.91595 1.21261 0.95081 0.92990 0.98649 1.20196 1.02109 0.94842 0.94175 1.18193 0.77804 0.82140 0.87618 1.90751 1.52716 1.66006 1.32480 1.45439 1.65346 1.07491 1.15468 1.22523 0.96739 0.93754 0.87915 1.22707 0.91879 0.90390 0.96302 1.46131 1.13391 1.26634 1.49575 1.20103 0.96838 1.06004 1.20622 0.89913 1.25705 0.94800 1.02244 0.99299 1.70930 1.36170 1.09657 1.40613 0.83691 0.75841 0.74283 0.75922 1.22232 1.22269 1.21339 1.23278 0.94829 0.88375 0.97711 1.21433 0.96487 1.00575 0.91705 1.20886 0.98137 0.93018 0.99068 0.88991 0.89616 0.88925 0.84509 0.83825 0.75703 0.87627 0.93241 0.92911 0.92866 0.92562 0.92763 0.84415 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 9.37 37.16 0.35 -0.75 16 2 C 0.34 3.03 2.32 -27.89 -0.06 2.97 16 3 F -0.19 -1.98 16.20 2.25 0.04 -1.95 16 4 F -0.19 -2.05 16.19 2.25 0.04 -2.01 16 5 C -0.14 -1.36 5.00 -104.53 -0.52 -1.88 16 6 C -0.10 -0.94 9.38 -39.64 -0.37 -1.32 16 7 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 8 C -0.11 -1.43 5.87 -104.97 -0.62 -2.04 16 9 C 0.56 8.75 7.77 -12.33 -0.10 8.65 16 10 O -0.54 -9.86 15.94 5.32 0.08 -9.78 16 11 N -0.69 -11.01 5.35 -54.43 -0.29 -11.30 16 12 C 0.10 1.68 4.61 -67.67 -0.31 1.37 16 13 C 0.11 2.09 8.44 -8.51 -0.07 2.02 16 14 N -0.63 -14.67 3.70 -184.60 -0.68 -15.35 16 15 C -0.31 -8.58 11.08 -15.06 -0.17 -8.75 16 16 H 0.08 2.40 8.05 -52.49 -0.42 1.98 16 17 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 18 N -0.93 -28.98 13.70 55.49 0.76 -28.22 16 19 Si 1.07 26.88 25.13 -169.99 -4.27 22.61 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.29 -7.11 6.65 56.52 0.38 -6.73 16 22 H -0.29 -6.76 6.13 56.52 0.35 -6.41 16 23 C 0.08 1.77 5.54 -8.36 -0.05 1.72 16 24 C -0.08 -0.95 9.54 -39.18 -0.37 -1.32 16 25 C -0.09 -0.94 9.38 -39.64 -0.37 -1.32 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.14 1.06 7.59 -52.49 -0.40 0.66 16 30 H 0.14 1.57 7.65 -52.48 -0.40 1.17 16 31 H 0.41 6.14 6.80 -40.82 -0.28 5.87 16 32 H 0.11 1.71 7.45 -51.93 -0.39 1.32 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 36 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 37 H 0.05 1.21 4.65 -51.93 -0.24 0.97 16 38 H 0.14 1.45 6.41 -52.49 -0.34 1.12 16 39 H 0.14 1.19 7.59 -52.49 -0.40 0.79 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -33.46 332.85 -7.06 -40.52 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.61 Total: 2.90 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.14 Total: -2.44 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.21 Total: -54.87 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.27 Total: 22.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.46 -7.06 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031502425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.846 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds