Wall clock time and date at job start Tue Mar 31 2020 09:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 110.64107 * 2 1 4 4 C 1.34779 * 119.99485 * 56.86058 * 3 2 1 5 5 O 1.21571 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.47729 * 119.99795 * 180.02562 * 4 3 2 7 7 C 1.39647 * 120.10898 * 180.02562 * 6 4 3 8 8 C 1.37849 * 119.92485 * 179.97438 * 7 6 4 9 9 C 1.38604 * 120.15025 * 0.02562 * 8 7 6 10 10 F 1.35098 * 119.89288 * 179.97438 * 9 8 7 11 11 C 1.38835 * 120.22081 * 359.97438 * 9 8 7 12 12 F 1.35096 * 119.96848 * 179.72020 * 11 9 8 13 13 C 1.38067 * 120.06754 * 0.02562 * 11 9 8 14 14 C 1.55161 * 110.71634 * 236.86329 * 2 1 3 15 15 C 1.54911 * 101.57737 * 205.95199 * 14 2 1 16 16 N 1.47422 * 104.83124 * 37.01050 * 15 14 2 17 17 C 1.36940 * 125.64514 * 155.90304 * 16 15 14 18 18 H 1.08008 * 119.99669 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00378 * 359.97438 * 17 16 15 20 20 N 1.31628 * 119.99726 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00183 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46928 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47007 * 239.99887 * 21 19 17 25 25 C 1.47018 * 108.70687 * 335.86831 * 16 15 14 26 26 H 1.08998 * 109.47443 * 60.69717 * 1 2 3 27 27 H 1.08997 * 109.47389 * 180.70079 * 1 2 3 28 28 H 1.09006 * 109.47418 * 300.69386 * 1 2 3 29 29 H 0.96991 * 120.00214 * 236.86439 * 3 2 1 30 30 H 1.08000 * 120.04163 * 359.95421 * 7 6 4 31 31 H 1.08005 * 119.92643 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.06782 * 179.97438 * 13 11 9 33 33 H 1.08992 * 111.00511 * 324.02719 * 14 2 1 34 34 H 1.09004 * 111.00245 * 87.84586 * 14 2 1 35 35 H 1.09002 * 110.36130 * 155.85072 * 15 14 2 36 36 H 1.09004 * 110.36871 * 278.17267 * 15 14 2 37 37 H 0.97003 * 119.99467 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.88745 * 241.64308 * 25 16 15 39 39 H 1.08999 * 109.88452 * 120.47501 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6868 2.2265 0.9774 5 8 0.9335 1.8607 1.8587 6 6 2.2070 3.6091 0.9772 7 6 1.8363 4.4973 1.9890 8 6 2.3245 5.7864 1.9854 9 6 3.1820 6.2033 0.9794 10 9 3.6569 7.4680 0.9806 11 6 3.5546 5.3254 -0.0296 12 9 4.3862 5.7388 -1.0107 13 6 3.0710 4.0322 -0.0348 14 6 2.0788 -0.7933 -1.2153 15 6 3.4651 -1.2445 -0.6915 16 7 3.2494 -1.5469 0.7351 17 6 4.0125 -2.3918 1.4961 18 1 3.7714 -2.5469 2.5374 19 6 5.0959 -3.0490 0.9292 20 7 5.3893 -2.8603 -0.3400 21 14 6.1372 -4.2009 1.9674 22 1 5.6025 -4.2389 3.3522 23 1 6.0977 -5.5656 1.3834 24 1 7.5398 -3.7135 1.9921 25 6 2.0799 -0.7906 1.2058 26 1 -0.3634 0.5029 -0.8961 27 1 -0.3634 -1.0275 0.0126 28 1 -0.3634 0.5246 0.8837 29 1 2.6470 1.6630 -0.7034 30 1 1.1677 4.1747 2.7734 31 1 2.0381 6.4732 2.7682 32 1 3.3605 3.3494 -0.8199 33 1 1.4468 -1.6528 -1.4385 34 1 2.1813 -0.1490 -2.0885 35 1 3.7992 -2.1362 -1.2221 36 1 4.1929 -0.4407 -0.8031 37 1 6.1462 -3.3198 -0.7362 38 1 2.3775 -0.1016 1.9963 39 1 1.3191 -1.4773 1.5769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046374607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:08 Heat of formation + Delta-G solvation = -84.793283 kcal Electronic energy + Delta-G solvation = -25594.333532 eV Core-core repulsion = 21559.160467 eV Total energy + Delta-G solvation = -4035.173065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.63033 -49.70590 -41.62428 -39.83329 -38.52592 -35.79217 -33.94125 -32.45748 -31.74058 -31.07986 -30.28903 -27.54350 -25.73836 -25.08229 -24.23228 -22.38363 -22.00966 -20.54791 -19.68376 -18.92770 -18.53218 -18.17661 -17.48502 -17.46982 -17.06066 -16.66262 -16.13433 -16.03832 -15.66816 -15.61920 -15.54710 -15.18572 -14.82584 -14.34829 -14.11578 -14.03737 -13.67188 -13.59298 -13.29624 -13.24425 -13.01906 -12.82298 -12.78119 -12.52551 -12.07489 -12.03190 -11.94973 -11.69997 -11.57692 -10.79833 -10.74943 -10.31443 -10.12254 -9.88220 -8.88306 -7.78917 -5.22132 -0.63406 -0.15531 1.46022 1.46178 1.55025 1.56774 2.03244 2.48010 2.49488 2.57223 3.11755 3.30695 3.35795 3.46667 3.67823 3.71220 3.83534 3.97347 4.02176 4.17872 4.42848 4.52496 4.64993 4.68144 4.69620 4.78586 4.87173 4.88289 4.91950 5.01478 5.05433 5.11432 5.37220 5.43880 5.51072 5.60034 5.65711 5.80824 6.31475 6.50968 7.10661 7.15689 7.77627 8.40451 9.22548 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.003652 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.392208 B = 7665.626560 C = 8305.304173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.698 5.698 4 C 0.559 3.441 5 O -0.556 6.556 6 C -0.121 4.121 7 C -0.038 4.038 8 C -0.116 4.116 9 C 0.085 3.915 10 F -0.129 7.129 11 C 0.051 3.949 12 F -0.133 7.133 13 C -0.088 4.088 14 C -0.128 4.128 15 C 0.153 3.847 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.060 4.060 20 N -0.944 5.944 21 Si 0.976 3.024 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.292 1.292 25 C 0.136 3.864 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.408 0.592 30 H 0.163 0.837 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.076 0.924 36 H -0.006 1.006 37 H 0.248 0.752 38 H 0.009 0.991 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 17.610 -1.435 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 N -0.349 5.349 4 C 0.347 3.653 5 O -0.436 6.436 6 C -0.124 4.124 7 C -0.057 4.057 8 C -0.134 4.134 9 C 0.065 3.935 10 F -0.107 7.107 11 C 0.030 3.970 12 F -0.112 7.112 13 C -0.107 4.107 14 C -0.167 4.167 15 C 0.028 3.972 16 N -0.350 5.350 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.805 3.195 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.219 1.219 25 C 0.010 3.990 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.245 0.755 30 H 0.180 0.820 31 H 0.203 0.797 32 H 0.180 0.820 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.121 17.258 -0.874 19.540 hybrid contribution 1.606 -0.335 0.011 1.641 sum -7.515 16.923 -0.863 18.537 Atomic orbital electron populations 1.21992 0.91712 1.03016 1.03385 1.21222 0.94619 0.80316 0.95531 1.45876 1.49375 1.11390 1.28286 1.18267 0.80536 0.85096 0.81394 1.90739 1.37229 1.78427 1.37188 1.19846 1.00707 0.94156 0.97710 1.21392 0.96548 0.91118 0.96622 1.21330 0.96381 0.97355 0.98377 1.18123 0.98766 0.79696 0.96950 1.91543 1.86669 1.36310 1.96214 1.17586 0.96515 0.93903 0.88954 1.91539 1.69264 1.90540 1.59823 1.21326 0.95870 0.94007 0.99541 1.23223 0.97506 0.99822 0.96150 1.21775 0.92341 0.98762 0.84285 1.44786 1.31244 1.50534 1.08402 1.19417 1.06813 1.17444 0.93296 0.91076 1.25517 0.99869 1.02225 0.97650 1.70019 1.30238 1.47132 1.11959 0.85044 0.78107 0.78305 0.78079 1.19689 1.21426 1.21868 1.21692 0.89092 0.92829 0.95381 0.90398 0.91231 0.91555 0.75465 0.81972 0.79693 0.82032 0.89661 0.88076 0.90641 0.98849 0.94236 0.97262 0.95655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.38 71.98 0.60 -3.34 16 2 C 0.17 5.54 0.81 4.79 0.00 5.55 16 3 N -0.70 -19.78 5.09 -420.48 -2.14 -21.92 16 4 C 0.56 16.07 6.98 86.75 0.61 16.67 16 5 O -0.56 -19.08 13.34 -3.94 -0.05 -19.13 16 6 C -0.12 -2.69 5.87 -20.09 -0.12 -2.81 16 7 C -0.04 -0.69 9.59 22.52 0.22 -0.47 16 8 C -0.12 -1.70 10.01 22.26 0.22 -1.48 16 9 C 0.09 1.59 7.31 22.50 0.16 1.76 16 10 F -0.13 -2.59 17.17 44.97 0.77 -1.81 16 11 C 0.05 1.05 7.30 22.37 0.16 1.21 16 12 F -0.13 -3.07 17.17 44.97 0.77 -2.30 16 13 C -0.09 -1.76 9.51 22.56 0.21 -1.55 16 14 C -0.13 -4.22 6.07 31.99 0.19 -4.03 16 15 C 0.15 7.10 5.87 86.86 0.51 7.61 16 16 N -0.62 -32.15 3.39 -691.99 -2.35 -34.50 16 17 C -0.24 -13.73 10.27 84.03 0.86 -12.86 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 20 N -0.94 -54.97 10.09 21.65 0.22 -54.75 16 21 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.14 5.93 6.20 86.73 0.54 6.47 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 28 H 0.07 2.02 6.03 -2.38 -0.01 2.01 16 29 H 0.41 9.68 6.52 -92.71 -0.60 9.08 16 30 H 0.16 2.74 7.65 -2.91 -0.02 2.72 16 31 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.16 2.75 6.40 -2.91 -0.02 2.74 16 33 H 0.08 2.73 8.05 -2.39 -0.02 2.72 16 34 H 0.10 2.59 8.07 -2.39 -0.02 2.57 16 35 H 0.08 4.03 5.87 -2.39 -0.01 4.02 16 36 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 37 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.01 0.45 6.90 -2.39 -0.02 0.43 16 39 H 0.03 1.13 7.81 -2.39 -0.02 1.11 16 Total: -1.00 -68.99 328.69 4.39 -64.60 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.50 Total: 12.15 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 4.65 Total: 9.81 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.27 Total: -111.17 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.54 Total: -4.11 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.99 4.39 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046374607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.193 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds