Wall clock time and date at job start Tue Mar 31 2020 09:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.39411 * 2 1 4 4 C 1.39624 * 118.32846 * 180.02562 * 3 2 1 5 5 N 1.38543 * 120.53030 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47332 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46982 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00228 * 90.00490 * 8 7 6 10 10 C 1.34777 * 119.99660 * 269.99656 * 8 7 6 11 11 O 1.21277 * 120.00434 * 0.02562 * 10 8 7 12 12 C 1.50706 * 119.99461 * 180.02562 * 10 8 7 13 13 S 1.81003 * 109.46821 * 180.02562 * 12 10 8 14 14 C 1.76203 * 100.00018 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.38795 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99863 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00226 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47439 * 90.00226 * 18 16 14 20 20 H 1.48506 * 109.47026 * 210.00369 * 18 16 14 21 21 H 1.48497 * 109.46966 * 329.99957 * 18 16 14 22 22 N 1.32991 * 118.93973 * 359.97438 * 4 3 2 23 23 C 1.31753 * 120.68859 * 0.02562 * 22 4 3 24 24 N 1.31795 * 121.82709 * 359.70747 * 23 22 4 25 25 H 1.08999 * 109.47015 * 90.00118 * 1 2 3 26 26 H 1.09000 * 109.46646 * 209.99270 * 1 2 3 27 27 H 1.09000 * 109.47248 * 329.99988 * 1 2 3 28 28 H 1.07997 * 120.83606 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00053 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46962 * 300.00115 * 6 5 4 31 31 H 1.09007 * 109.47327 * 59.99805 * 6 5 4 32 32 H 1.09002 * 109.47266 * 300.00020 * 7 6 5 33 33 H 1.09000 * 109.47134 * 60.00383 * 7 6 5 34 34 H 1.09001 * 109.47703 * 89.99274 * 9 8 7 35 35 H 1.08997 * 109.47214 * 209.99818 * 9 8 7 36 36 H 1.09012 * 109.46914 * 329.99576 * 9 8 7 37 37 H 1.09005 * 109.47044 * 299.99962 * 12 10 8 38 38 H 1.09000 * 109.47272 * 60.00514 * 12 10 8 39 39 H 0.96996 * 120.00482 * 179.97438 * 17 16 14 40 40 H 1.07998 * 119.08712 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3083 -0.0011 6 6 3.6733 3.6089 -0.0006 7 6 4.7192 4.7255 -0.0007 8 7 4.0449 6.0261 -0.0008 9 6 3.7079 6.6766 1.2679 10 6 3.7347 6.6243 -1.1680 11 8 4.0134 6.0857 -2.2183 12 6 3.0416 7.9625 -1.1681 13 16 2.7630 8.4976 -2.8746 14 6 1.9645 10.0413 -2.5848 15 1 1.7908 10.3779 -1.5734 16 6 1.5578 10.8242 -3.6563 17 7 0.9617 11.9777 -3.4397 18 14 1.8576 10.2416 -5.4056 19 1 0.6938 9.4434 -5.8678 20 1 2.0361 11.4173 -6.2951 21 1 3.0812 9.4012 -5.4445 22 7 4.2024 -0.0452 -0.0005 23 6 3.4957 -1.1572 -0.0005 24 7 2.1778 -1.1432 0.0052 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.6861 2.1380 -0.0004 29 1 5.3166 2.2643 -0.0011 30 1 3.0492 3.6949 -0.8901 31 1 3.0505 3.6950 0.8899 32 1 5.3430 4.6393 0.8890 33 1 5.3422 4.6397 -0.8910 34 1 4.5366 7.3109 1.5825 35 1 2.8133 7.2856 1.1376 36 1 3.5228 5.9171 2.0277 37 1 2.0842 7.8758 -0.6540 38 1 3.6648 8.6945 -0.6545 39 1 0.6778 12.5250 -4.1885 40 1 4.0106 -2.1065 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101514607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:05 Heat of formation + Delta-G solvation = 16.587680 kcal Electronic energy + Delta-G solvation = -22131.193891 eV Core-core repulsion = 18686.550172 eV Total energy + Delta-G solvation = -3444.643719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13994 -39.80737 -37.18834 -35.50584 -34.23167 -32.49056 -32.10870 -30.31642 -28.64965 -28.13933 -26.62174 -25.67317 -24.57524 -22.88650 -22.25886 -19.56864 -18.29072 -17.78306 -17.40147 -16.84177 -16.09083 -15.87345 -15.59126 -15.51260 -15.05482 -14.98214 -14.70294 -14.58368 -13.84123 -13.44950 -13.35959 -13.23290 -13.19145 -12.84280 -12.67877 -12.57879 -12.50311 -12.05366 -12.01935 -11.31343 -11.07689 -11.05399 -10.90735 -10.66647 -9.94564 -9.91458 -9.66408 -9.42866 -9.05536 -8.87821 -8.56280 -8.46762 -6.98907 -6.33949 -4.06602 0.84135 1.15061 2.32687 2.72295 2.83222 3.19773 3.29247 3.46258 3.53447 3.67752 3.93816 4.12996 4.27974 4.42451 4.48147 4.53465 4.67942 4.91189 4.92522 5.01245 5.03455 5.05093 5.07697 5.24464 5.27117 5.31634 5.45928 5.50166 5.52791 5.57754 5.65237 5.69394 5.91171 6.00682 6.30967 6.46310 6.94825 7.21490 7.25648 7.88961 8.06800 8.25199 8.36103 9.12096 10.75184 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002591 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.368309 B =10805.894758 C =11398.640214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.202 3.798 3 C -0.292 4.292 4 C 0.442 3.558 5 N -0.707 5.707 6 C 0.108 3.892 7 C 0.110 3.890 8 N -0.621 5.621 9 C 0.077 3.923 10 C 0.531 3.469 11 O -0.513 6.513 12 C -0.121 4.121 13 S -0.143 6.143 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.879 5.879 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 N -0.586 5.586 23 C 0.340 3.660 24 N -0.567 5.567 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -20.441 12.623 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.060 3.940 3 C -0.320 4.320 4 C 0.198 3.802 5 N -0.339 5.339 6 C -0.018 4.018 7 C -0.015 4.015 8 N -0.357 5.357 9 C -0.066 4.066 10 C 0.319 3.681 11 O -0.386 6.386 12 C -0.272 4.272 13 S 0.083 5.917 14 C -0.669 4.669 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 N -0.311 5.311 23 C 0.050 3.950 24 N -0.287 5.287 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.158 0.842 29 H 0.245 0.755 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.810 -21.670 11.001 24.773 hybrid contribution -0.329 1.510 0.546 1.639 sum 4.481 -20.160 11.546 23.660 Atomic orbital electron populations 1.20778 0.88097 1.03838 1.03711 1.21404 0.97280 0.87679 0.87654 1.22010 0.93610 1.00999 1.15336 1.18479 0.88415 0.86558 0.86745 1.44295 1.09019 1.02009 1.78595 1.21895 0.96429 0.80872 1.02598 1.21386 0.94151 0.81746 1.04185 1.47716 1.61420 1.19743 1.06854 1.21867 1.01739 0.98210 0.84782 1.20425 0.78171 0.86632 0.82844 1.90714 1.52012 1.65277 1.30617 1.23316 1.02999 0.95710 1.05136 1.84828 1.78342 1.25655 1.02857 1.22286 1.43829 1.03144 0.97643 0.89349 1.24711 0.93349 0.93910 0.99316 1.69932 1.38017 1.11141 1.32480 0.86740 0.81415 0.79617 0.84112 1.19188 1.19897 1.15942 1.67934 1.41771 0.97822 1.23540 1.24621 0.86642 0.95598 0.88155 1.68266 1.09993 1.29952 1.20521 0.89654 0.90009 0.90252 0.84152 0.75543 0.90682 0.91366 0.89845 0.88912 0.92211 0.90205 0.91164 0.88376 0.88338 0.91885 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.21 36.01 0.37 -0.41 16 2 C 0.20 2.10 6.82 -82.33 -0.56 1.53 16 3 C -0.29 -3.06 9.08 -39.11 -0.35 -3.42 16 4 C 0.44 4.93 7.71 -154.78 -1.19 3.74 16 5 N -0.71 -6.58 5.71 -60.27 -0.34 -6.92 16 6 C 0.11 0.98 5.25 -4.04 -0.02 0.96 16 7 C 0.11 1.01 5.52 -4.04 -0.02 0.99 16 8 N -0.62 -7.07 2.87 -181.57 -0.52 -7.60 16 9 C 0.08 0.62 10.24 59.85 0.61 1.23 16 10 C 0.53 8.75 7.69 -10.98 -0.08 8.67 16 11 O -0.51 -10.35 15.44 5.56 0.09 -10.26 16 12 C -0.12 -2.20 4.71 36.01 0.17 -2.03 16 13 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 14 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 15 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 16 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 17 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 18 Si 0.86 21.41 27.74 -169.99 -4.71 16.70 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 22 N -0.59 -6.74 10.47 -13.81 -0.14 -6.88 16 23 C 0.34 3.52 12.28 -92.19 -1.13 2.38 16 24 N -0.57 -6.36 10.37 -10.88 -0.11 -6.48 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.14 1.29 6.87 -52.49 -0.36 0.93 16 29 H 0.41 3.33 8.60 -40.82 -0.35 2.98 16 30 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 31 H 0.07 0.54 7.98 -51.93 -0.41 0.13 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.13 16 33 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.67 6.44 -51.93 -0.33 0.34 16 36 H 0.07 0.39 8.07 -51.92 -0.42 -0.02 16 37 H 0.10 1.64 7.40 -51.91 -0.38 1.25 16 38 H 0.10 1.67 8.11 -51.92 -0.42 1.25 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -34.99 354.97 -9.22 -44.21 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.59 Total: 0.68 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.00 Total: 1.99 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.35 Total: -53.17 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.99 -9.22 -44.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.798 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds