Wall clock time and date at job start Tue Mar 31 2020 09:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34789 * 117.00160 * 2 1 4 4 O 1.21554 * 119.99299 * 0.02562 * 3 2 1 5 5 C 1.47104 * 120.00016 * 180.02562 * 3 2 1 6 6 C 1.46747 * 127.02605 * 0.02795 * 5 3 2 7 7 C 1.34433 * 106.36974 * 179.97438 * 6 5 3 8 8 C 1.50706 * 125.45031 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.46957 * 94.97767 * 8 7 6 10 10 C 1.36936 * 119.99744 * 269.99433 * 9 8 7 11 11 H 1.07998 * 119.99741 * 142.08336 * 10 9 8 12 12 C 1.38813 * 120.00240 * 322.08084 * 10 9 8 13 13 N 1.31620 * 119.99952 * 156.99933 * 12 10 9 14 14 Si 1.86799 * 119.99973 * 337.00396 * 12 10 9 15 15 H 1.48504 * 109.47347 * 95.69845 * 14 12 10 16 16 H 1.48496 * 109.47224 * 215.69691 * 14 12 10 17 17 H 1.48495 * 109.47167 * 335.69951 * 14 12 10 18 18 C 1.46498 * 119.99981 * 90.00024 * 9 8 7 19 19 C 1.52997 * 109.47226 * 89.63842 * 18 9 8 20 20 C 1.50709 * 109.47034 * 179.97438 * 19 18 9 21 21 O 1.20826 * 119.99945 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99878 * 179.97438 * 20 19 18 23 23 N 1.36427 * 109.08952 * 359.75999 * 7 6 5 24 24 H 0.97002 * 124.81042 * 180.24668 * 23 7 6 25 25 C 1.34627 * 110.37845 * 0.40861 * 23 7 6 26 26 C 1.50704 * 125.89213 * 179.86132 * 25 23 7 27 27 H 1.09002 * 109.47509 * 59.99861 * 1 2 3 28 28 H 1.09005 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47351 * 299.99517 * 1 2 3 30 30 H 1.07991 * 126.80973 * 0.02562 * 6 5 3 31 31 H 1.08994 * 109.46635 * 214.97449 * 8 7 6 32 32 H 1.08992 * 109.47052 * 334.97319 * 8 7 6 33 33 H 0.97004 * 120.00058 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.46973 * 209.63474 * 18 9 8 35 35 H 1.08995 * 109.47357 * 329.63379 * 18 9 8 36 36 H 1.08996 * 109.46915 * 299.99366 * 19 18 9 37 37 H 1.09001 * 109.47056 * 59.99866 * 19 18 9 38 38 H 0.96701 * 116.99801 * 180.02562 * 22 20 19 39 39 H 1.09007 * 109.46539 * 269.68834 * 26 25 23 40 40 H 1.09002 * 109.47027 * 149.69593 * 26 25 23 41 41 H 1.08995 * 109.47477 * 29.69021 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2203 0.0005 5 6 3.5329 1.2779 -0.0006 6 6 4.4767 0.1542 -0.0017 7 6 5.7081 0.6936 -0.0025 8 6 7.0013 -0.0803 -0.0043 9 7 7.4805 -0.2270 -1.3809 10 6 7.0979 -1.3094 -2.1273 11 1 6.8880 -1.1922 -3.1802 12 6 6.9797 -2.5572 -1.5307 13 7 6.2099 -3.4762 -2.0741 14 14 7.9130 -2.9320 0.0434 15 1 7.0268 -2.6987 1.2119 16 1 8.3537 -4.3500 0.0318 17 1 9.1004 -2.0453 0.1379 18 6 8.3692 0.7841 -1.9589 19 6 9.8244 0.4063 -1.6750 20 6 10.7386 1.4462 -2.2701 21 8 10.2740 2.3921 -2.8610 22 8 12.0691 1.3215 -2.1436 23 7 5.5995 2.0535 -0.0072 24 1 6.3493 2.6689 -0.0121 25 6 4.3042 2.4204 -0.0007 26 6 3.7868 3.8358 -0.0002 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 4.2307 -0.8974 -0.0028 31 1 7.7459 0.4553 0.5845 32 1 6.8354 -1.0662 0.4297 33 1 6.1270 -4.3481 -1.6570 34 1 8.2105 0.8343 -3.0361 35 1 8.1526 1.7552 -1.5140 36 1 9.9832 0.3561 -0.5978 37 1 10.0411 -0.5649 -2.1199 38 1 12.6147 2.0136 -2.5416 39 1 3.6626 4.1768 1.0277 40 1 2.8259 3.8716 -0.5135 41 1 4.4977 4.4827 -0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606539708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:57 Heat of formation + Delta-G solvation = -114.389640 kcal Electronic energy + Delta-G solvation = -25879.037108 eV Core-core repulsion = 21953.668164 eV Total energy + Delta-G solvation = -3925.368944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91882 -40.01628 -39.48553 -36.52920 -35.97620 -35.79511 -32.22276 -31.88245 -30.86845 -30.27551 -27.84783 -27.28872 -25.12254 -24.54457 -22.49411 -21.74074 -20.26306 -19.78463 -19.30120 -17.94642 -17.53628 -16.81706 -16.28457 -15.96634 -15.91443 -15.75685 -15.59586 -15.18852 -14.50830 -13.93904 -13.59281 -13.37288 -13.17436 -13.03457 -12.92893 -12.82335 -12.65219 -12.32085 -12.26024 -12.05048 -11.86595 -11.74585 -11.45305 -11.36949 -11.01568 -10.73685 -10.47713 -10.39065 -10.33339 -10.22464 -10.03842 -9.74188 -8.66863 -8.41906 -7.60560 -7.12481 -6.11312 -3.56734 1.82887 2.41748 2.85458 3.06391 3.19394 3.29666 3.35259 3.38164 3.66683 3.73250 4.38135 4.92016 5.04966 5.18158 5.27245 5.29408 5.32885 5.35564 5.39159 5.48475 5.57156 5.65023 5.68111 5.74442 5.84964 5.94948 6.00929 6.09001 6.30437 6.34047 6.40627 6.56706 6.58384 6.71367 6.86238 7.27824 7.47491 7.80821 7.88643 8.06234 8.25837 8.27201 8.78891 9.54347 9.89377 11.03147 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.004588 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.602216 B = 6100.990988 C = 7739.959056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.546 3.454 4 O -0.536 6.536 5 C -0.235 4.235 6 C -0.123 4.123 7 C 0.015 3.985 8 C 0.194 3.806 9 N -0.590 5.590 10 C -0.277 4.277 11 H 0.081 0.919 12 C 0.046 3.954 13 N -0.885 5.885 14 Si 0.865 3.135 15 H -0.281 1.281 16 H -0.297 1.297 17 H -0.266 1.266 18 C 0.165 3.835 19 C -0.139 4.139 20 C 0.481 3.519 21 O -0.524 6.524 22 O -0.523 6.523 23 N -0.537 5.537 24 H 0.411 0.589 25 C 0.104 3.896 26 C -0.091 4.091 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.401 0.599 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 9.854 5.855 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.266 6.266 3 C 0.394 3.606 4 O -0.428 6.428 5 C -0.244 4.244 6 C -0.146 4.146 7 C -0.095 4.095 8 C 0.067 3.933 9 N -0.309 5.309 10 C -0.405 4.405 11 H 0.099 0.901 12 C -0.157 4.157 13 N -0.524 5.524 14 Si 0.694 3.306 15 H -0.208 1.208 16 H -0.225 1.225 17 H -0.191 1.191 18 C 0.038 3.962 19 C -0.179 4.179 20 C 0.323 3.677 21 O -0.413 6.413 22 O -0.335 6.335 23 N -0.133 5.133 24 H 0.248 0.752 25 C -0.016 4.016 26 C -0.149 4.149 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.259 0.741 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.326 9.892 5.833 11.488 hybrid contribution 1.022 0.275 0.523 1.180 sum 1.348 10.167 6.356 12.066 Atomic orbital electron populations 1.23166 0.77132 1.03251 1.01969 1.86646 1.22488 1.32943 1.84532 1.20214 0.88016 0.80808 0.71525 1.90739 1.67018 1.35983 1.49097 1.19287 0.88635 0.93798 1.22664 1.21841 0.89822 0.98050 1.04929 1.21586 0.99019 0.81313 1.07604 1.19964 0.88217 0.97439 0.87651 1.44198 1.50227 1.25024 1.11500 1.18736 1.42354 0.84477 0.94912 0.90117 1.25453 0.97109 0.95632 0.97481 1.69878 1.35368 1.06056 1.41089 0.87124 0.81816 0.77357 0.84319 1.20836 1.22490 1.19077 1.20757 0.85103 0.91073 0.99275 1.22406 0.95557 0.97752 1.02195 1.24135 0.80971 0.86215 0.76332 1.90678 1.76776 1.33342 1.40506 1.84631 1.20182 1.54177 1.74485 1.41580 1.06415 1.07660 1.57624 0.75214 1.20368 0.83393 0.95333 1.02457 1.20522 1.02500 0.88839 1.03000 0.92251 0.88425 0.92386 0.83340 0.93213 0.90054 0.92407 0.91574 0.93891 0.88737 0.87047 0.74134 0.90740 0.88588 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.56 16 2 O -0.35 -6.08 10.47 -40.73 -0.43 -6.51 16 3 C 0.55 10.05 7.95 34.33 0.27 10.33 16 4 O -0.54 -9.98 14.67 -19.31 -0.28 -10.26 16 5 C -0.23 -4.38 6.33 -103.01 -0.65 -5.03 16 6 C -0.12 -2.48 10.89 -37.49 -0.41 -2.88 16 7 C 0.02 0.29 6.70 -81.89 -0.55 -0.26 16 8 C 0.19 3.71 5.03 -5.19 -0.03 3.69 16 9 N -0.59 -12.34 2.05 -174.61 -0.36 -12.69 16 10 C -0.28 -7.03 9.90 -15.06 -0.15 -7.18 16 11 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 12 C 0.05 1.20 5.29 -17.43 -0.09 1.11 16 13 N -0.88 -25.24 13.97 55.49 0.78 -24.47 16 14 Si 0.86 19.76 25.10 -169.99 -4.27 15.50 16 15 H -0.28 -6.27 6.68 56.52 0.38 -5.89 16 16 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 18 C 0.16 2.95 4.96 -4.04 -0.02 2.93 16 19 C -0.14 -2.19 6.14 -27.88 -0.17 -2.36 16 20 C 0.48 7.04 8.33 36.01 0.30 7.34 16 21 O -0.52 -8.93 16.74 -18.75 -0.31 -9.24 16 22 O -0.52 -6.17 13.42 -39.25 -0.53 -6.69 16 23 N -0.54 -8.24 5.89 -5.20 -0.03 -8.27 16 24 H 0.41 5.01 8.96 -40.82 -0.37 4.64 16 25 C 0.10 1.66 7.22 -81.51 -0.59 1.07 16 26 C -0.09 -1.14 9.90 36.01 0.36 -0.79 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.15 3.19 8.06 -52.49 -0.42 2.77 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.08 1.72 3.37 -51.93 -0.18 1.55 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.29 7.99 -51.92 -0.42 0.87 16 35 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.40 2.85 9.10 45.56 0.41 3.26 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.34 6.51 -51.93 -0.34 1.00 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -32.54 355.86 -5.41 -37.95 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.68 Total: 9.80 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.66 Total: 9.52 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.39 Total: -45.43 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.55 Total: -32.70 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.27 Total: 15.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.54 -5.41 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606539708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.443 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds