Wall clock time and date at job start Tue Mar 31 2020 09:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34789 * 117.00160 * 2 1 4 4 O 1.21554 * 119.99299 * 0.02562 * 3 2 1 5 5 C 1.47104 * 120.00016 * 180.02562 * 3 2 1 6 6 C 1.46747 * 127.02605 * 0.02795 * 5 3 2 7 7 C 1.34433 * 106.36974 * 179.97438 * 6 5 3 8 8 C 1.50706 * 125.45031 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.46957 * 94.97767 * 8 7 6 10 10 C 1.36936 * 119.99744 * 269.99433 * 9 8 7 11 11 H 1.07998 * 119.99741 * 142.08336 * 10 9 8 12 12 C 1.38813 * 120.00240 * 322.08084 * 10 9 8 13 13 N 1.31620 * 119.99952 * 156.99933 * 12 10 9 14 14 Si 1.86799 * 119.99973 * 337.00396 * 12 10 9 15 15 H 1.48504 * 109.47347 * 95.69845 * 14 12 10 16 16 H 1.48496 * 109.47224 * 215.69691 * 14 12 10 17 17 H 1.48495 * 109.47167 * 335.69951 * 14 12 10 18 18 C 1.46498 * 119.99981 * 90.00024 * 9 8 7 19 19 C 1.52997 * 109.47226 * 89.63842 * 18 9 8 20 20 C 1.50709 * 109.47034 * 179.97438 * 19 18 9 21 21 O 1.20826 * 119.99945 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99878 * 179.97438 * 20 19 18 23 23 N 1.36427 * 109.08952 * 359.75999 * 7 6 5 24 24 H 0.97002 * 124.81042 * 180.24668 * 23 7 6 25 25 C 1.34627 * 110.37845 * 0.40861 * 23 7 6 26 26 C 1.50704 * 125.89213 * 179.86132 * 25 23 7 27 27 H 1.09002 * 109.47509 * 59.99861 * 1 2 3 28 28 H 1.09005 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47351 * 299.99517 * 1 2 3 30 30 H 1.07991 * 126.80973 * 0.02562 * 6 5 3 31 31 H 1.08994 * 109.46635 * 214.97449 * 8 7 6 32 32 H 1.08992 * 109.47052 * 334.97319 * 8 7 6 33 33 H 0.97004 * 120.00058 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.46973 * 209.63474 * 18 9 8 35 35 H 1.08995 * 109.47357 * 329.63379 * 18 9 8 36 36 H 1.08996 * 109.46915 * 299.99366 * 19 18 9 37 37 H 1.09001 * 109.47056 * 59.99866 * 19 18 9 38 38 H 0.96701 * 116.99801 * 180.02562 * 22 20 19 39 39 H 1.09007 * 109.46539 * 269.68834 * 26 25 23 40 40 H 1.09002 * 109.47027 * 149.69593 * 26 25 23 41 41 H 1.08995 * 109.47477 * 29.69021 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4018 2.2203 0.0005 5 6 3.5329 1.2779 -0.0006 6 6 4.4767 0.1542 -0.0017 7 6 5.7081 0.6936 -0.0025 8 6 7.0013 -0.0803 -0.0043 9 7 7.4805 -0.2270 -1.3809 10 6 7.0979 -1.3094 -2.1273 11 1 6.8880 -1.1922 -3.1802 12 6 6.9797 -2.5572 -1.5307 13 7 6.2099 -3.4762 -2.0741 14 14 7.9130 -2.9320 0.0434 15 1 7.0268 -2.6987 1.2119 16 1 8.3537 -4.3500 0.0318 17 1 9.1004 -2.0453 0.1379 18 6 8.3692 0.7841 -1.9589 19 6 9.8244 0.4063 -1.6750 20 6 10.7386 1.4462 -2.2701 21 8 10.2740 2.3921 -2.8610 22 8 12.0691 1.3215 -2.1436 23 7 5.5995 2.0535 -0.0072 24 1 6.3493 2.6689 -0.0121 25 6 4.3042 2.4204 -0.0007 26 6 3.7868 3.8358 -0.0002 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 4.2307 -0.8974 -0.0028 31 1 7.7459 0.4553 0.5845 32 1 6.8354 -1.0662 0.4297 33 1 6.1270 -4.3481 -1.6570 34 1 8.2105 0.8343 -3.0361 35 1 8.1526 1.7552 -1.5140 36 1 9.9832 0.3561 -0.5978 37 1 10.0411 -0.5649 -2.1199 38 1 12.6147 2.0136 -2.5416 39 1 3.6626 4.1768 1.0277 40 1 2.8259 3.8716 -0.5135 41 1 4.4977 4.4827 -0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606539708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:57 Heat of formation + Delta-G solvation = -136.842272 kcal Electronic energy + Delta-G solvation = -25880.010727 eV Core-core repulsion = 21953.668164 eV Total energy + Delta-G solvation = -3926.342563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.28168 -41.15949 -40.82824 -38.04276 -37.28919 -36.99026 -34.03831 -33.26340 -32.23815 -31.68261 -29.15041 -28.54163 -26.78264 -25.90529 -23.85609 -23.14411 -21.65912 -21.20961 -20.64574 -19.28757 -18.96890 -18.27186 -17.50639 -17.34975 -17.23645 -17.16368 -16.89040 -16.73973 -15.86493 -15.37545 -15.03599 -14.86475 -14.50328 -14.41766 -14.28901 -14.08219 -13.92777 -13.76494 -13.69686 -13.28078 -13.15507 -12.94525 -12.92908 -12.57080 -12.47482 -12.30543 -12.00779 -11.81434 -11.71659 -11.60164 -11.54687 -11.41010 -10.61996 -9.82416 -9.04241 -8.87232 -8.14364 -5.57820 0.48232 1.27980 1.35989 1.42015 1.50270 1.58491 1.84651 2.19895 2.31623 2.39319 2.47186 3.11707 3.49096 3.83704 3.96574 4.11495 4.15257 4.20719 4.27251 4.33829 4.35750 4.38198 4.58915 4.61907 4.69207 4.70128 4.74834 4.79137 4.94255 4.99624 5.10250 5.21951 5.24258 5.51375 5.67479 5.80333 5.94219 6.03978 6.24349 6.61947 6.90609 6.93630 7.08724 7.60109 7.98813 9.04496 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.004588 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.602216 B = 6100.990988 C = 7739.959056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.541 3.459 4 O -0.544 6.544 5 C -0.270 4.270 6 C -0.154 4.154 7 C 0.014 3.986 8 C 0.191 3.809 9 N -0.596 5.596 10 C -0.261 4.261 11 H 0.033 0.967 12 C -0.009 4.009 13 N -0.941 5.941 14 Si 0.929 3.071 15 H -0.274 1.274 16 H -0.312 1.312 17 H -0.232 1.232 18 C 0.166 3.834 19 C -0.134 4.134 20 C 0.494 3.506 21 O -0.551 6.551 22 O -0.514 6.514 23 N -0.520 5.520 24 H 0.431 0.569 25 C 0.127 3.873 26 C -0.088 4.088 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.425 0.575 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 12.486 7.750 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.288 6.288 3 C 0.391 3.609 4 O -0.437 6.437 5 C -0.278 4.278 6 C -0.178 4.178 7 C -0.098 4.098 8 C 0.066 3.934 9 N -0.317 5.317 10 C -0.391 4.391 11 H 0.051 0.949 12 C -0.206 4.206 13 N -0.584 5.584 14 Si 0.756 3.244 15 H -0.201 1.201 16 H -0.241 1.241 17 H -0.154 1.154 18 C 0.041 3.959 19 C -0.174 4.174 20 C 0.338 3.662 21 O -0.442 6.442 22 O -0.328 6.328 23 N -0.117 5.117 24 H 0.271 0.729 25 C 0.006 3.994 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.286 0.714 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.356 12.586 7.739 14.961 hybrid contribution 0.361 -0.452 -0.155 0.599 sum 2.717 12.133 7.584 14.564 Atomic orbital electron populations 1.23504 0.74733 1.05321 1.02633 1.86626 1.25047 1.32770 1.84317 1.20268 0.88162 0.81012 0.71498 1.90713 1.67178 1.36041 1.49809 1.19535 0.89058 0.94344 1.24850 1.21740 0.91611 0.97409 1.07043 1.21345 0.98094 0.82729 1.07587 1.20024 0.89492 0.97211 0.86714 1.44151 1.51447 1.24217 1.11885 1.18460 1.41067 0.86148 0.93431 0.94943 1.26057 0.97826 0.95381 1.01372 1.70031 1.37876 1.06664 1.43812 0.86080 0.81401 0.76650 0.80230 1.20108 1.24133 1.15428 1.20701 0.86226 0.91147 0.97856 1.22126 0.94253 0.97410 1.03624 1.23641 0.81769 0.85217 0.75573 1.90685 1.77482 1.34383 1.41671 1.84546 1.18863 1.55136 1.74244 1.41443 1.07012 1.06691 1.56599 0.72879 1.20895 0.83085 0.96281 0.99129 1.20632 1.02399 0.86813 1.04620 0.91968 0.85779 0.91317 0.86324 0.88718 0.92117 0.92824 0.94091 0.91391 0.86486 0.88225 0.71364 0.88566 0.89947 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.98 16 2 O -0.37 -13.27 10.47 -57.00 -0.60 -13.87 16 3 C 0.54 20.20 7.95 70.15 0.56 20.75 16 4 O -0.54 -20.06 14.67 19.66 0.29 -19.77 16 5 C -0.27 -10.08 6.33 -18.82 -0.12 -10.20 16 6 C -0.15 -6.37 10.89 23.62 0.26 -6.12 16 7 C 0.01 0.50 6.70 40.98 0.27 0.77 16 8 C 0.19 6.93 5.03 85.63 0.43 7.37 16 9 N -0.60 -24.41 2.05 -706.36 -1.45 -25.86 16 10 C -0.26 -13.73 9.90 84.03 0.83 -12.90 16 11 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 12 C -0.01 -0.47 5.29 84.86 0.45 -0.02 16 13 N -0.94 -56.60 13.97 21.65 0.30 -56.30 16 14 Si 0.93 41.03 25.10 68.60 1.72 42.75 16 15 H -0.27 -11.70 6.68 99.48 0.66 -11.04 16 16 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 17 H -0.23 -8.83 7.11 99.48 0.71 -8.12 16 18 C 0.17 5.66 4.96 86.38 0.43 6.09 16 19 C -0.13 -3.82 6.14 29.85 0.18 -3.64 16 20 C 0.49 12.91 8.33 71.24 0.59 13.50 16 21 O -0.55 -17.33 16.74 21.97 0.37 -16.96 16 22 O -0.51 -10.11 13.42 -51.38 -0.69 -10.80 16 23 N -0.52 -14.52 5.89 -170.36 -1.00 -15.53 16 24 H 0.43 8.62 8.96 -92.71 -0.83 7.79 16 25 C 0.13 3.80 7.22 42.04 0.30 4.10 16 26 C -0.09 -1.90 9.90 71.24 0.71 -1.20 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 5.51 8.06 -2.92 -0.02 5.49 16 31 H 0.09 2.59 8.07 -2.39 -0.02 2.57 16 32 H 0.06 2.49 3.37 -2.39 -0.01 2.48 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.04 1.59 7.99 -2.38 -0.02 1.57 16 35 H 0.07 1.97 8.03 -2.39 -0.02 1.95 16 36 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.42 4.32 9.10 -74.06 -0.67 3.64 16 39 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.08 2.11 6.51 -2.39 -0.02 2.09 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.00 355.86 4.57 -70.43 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.46 Total: 25.42 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.09 Total: 20.49 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.15 Total: -97.69 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.63 Total: -61.40 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.72 Total: 42.75 kcal Total: -75.00 4.57 -70.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606539708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.412 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds