Wall clock time and date at job start Tue Mar 31 2020 10:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47266 * 2 1 4 4 C 1.36935 * 119.99921 * 273.47934 * 3 2 1 5 5 H 1.08001 * 120.00042 * 322.14513 * 4 3 2 6 6 C 1.38807 * 119.99888 * 142.14377 * 4 3 2 7 7 N 1.31627 * 119.99700 * 157.08569 * 6 4 3 8 8 Si 1.86802 * 120.00397 * 337.08106 * 6 4 3 9 9 H 1.48496 * 109.47046 * 95.74213 * 8 6 4 10 10 H 1.48493 * 109.47319 * 215.74366 * 8 6 4 11 11 H 1.48502 * 109.46839 * 335.74161 * 8 6 4 12 12 C 1.46494 * 119.99893 * 93.47390 * 3 2 1 13 13 C 1.53004 * 109.46941 * 90.00145 * 12 3 2 14 14 H 1.09001 * 109.46871 * 60.00462 * 13 12 3 15 15 O 1.42896 * 109.47348 * 300.00052 * 13 12 3 16 16 C 1.52996 * 109.47059 * 179.97438 * 13 12 3 17 17 O 1.42900 * 109.47180 * 185.00480 * 16 13 12 18 18 C 1.35904 * 117.00093 * 180.02562 * 17 16 13 19 19 C 1.38750 * 120.05576 * 359.71544 * 18 17 16 20 20 C 1.38124 * 119.94511 * 179.79507 * 19 18 17 21 21 C 1.38288 * 120.05335 * 0.48751 * 20 19 18 22 22 C 1.38241 * 120.11231 * 359.74200 * 21 20 19 23 23 N 1.48008 * 119.97534 * 180.02562 * 22 21 20 24 24 O 1.21798 * 120.00171 * 180.02562 * 23 22 21 25 25 O 1.21803 * 119.99384 * 0.02562 * 23 22 21 26 26 C 1.38170 * 120.05832 * 0.02588 * 22 21 20 27 27 H 1.09004 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47173 * 299.99749 * 1 2 3 29 29 H 1.08999 * 109.47325 * 59.99681 * 1 2 3 30 30 H 1.09004 * 109.47173 * 240.00251 * 2 1 3 31 31 H 1.08999 * 109.47325 * 120.00318 * 2 1 3 32 32 H 0.97003 * 119.99385 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47256 * 210.00284 * 12 3 2 34 34 H 1.09001 * 109.47682 * 330.00471 * 12 3 2 35 35 H 0.96700 * 113.99530 * 299.99837 * 15 13 12 36 36 H 1.09007 * 109.47480 * 304.99908 * 16 13 12 37 37 H 1.09002 * 109.47123 * 65.00125 * 16 13 12 38 38 H 1.07999 * 120.02923 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.97435 * 180.22827 * 20 19 18 40 40 H 1.08002 * 119.94622 * 179.76589 * 21 20 19 41 41 H 1.07999 * 120.03374 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1787 2.0507 -1.1837 5 1 2.5478 1.5282 -2.0539 6 6 1.8669 3.4009 -1.2652 7 7 2.4135 4.1471 -2.2016 8 14 0.6716 4.1588 -0.0460 9 1 1.4298 4.7803 1.0693 10 1 -0.1420 5.1958 -0.7299 11 1 -0.2231 3.1026 0.4917 12 6 2.3350 2.0461 1.2664 13 6 3.8028 1.7976 1.6198 14 1 4.4392 2.1975 0.8304 15 8 4.0303 0.3929 1.7495 16 6 4.1337 2.4926 2.9420 17 8 5.5303 2.3594 3.2137 18 6 5.9925 2.9247 4.3599 19 6 5.1208 3.5991 5.2028 20 6 5.5924 4.1691 6.3692 21 6 6.9338 4.0768 6.6922 22 6 7.8052 3.4096 5.8516 23 7 9.2403 3.3121 6.2005 24 8 10.0085 2.7248 5.4601 25 8 9.6529 3.8194 7.2282 26 6 7.3377 2.8335 4.6860 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1959 5.0907 -2.2583 33 1 2.1614 3.1177 1.1675 34 1 1.6986 1.6464 2.0558 35 1 3.4960 -0.0303 2.4354 36 1 3.8766 3.5496 2.8713 37 1 3.5612 2.0325 3.7475 38 1 4.0739 3.6750 4.9490 39 1 4.9136 4.6910 7.0275 40 1 7.3013 4.5265 7.6028 41 1 8.0189 2.3126 4.0295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299514913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:29 Heat of formation + Delta-G solvation = -37.471810 kcal Electronic energy + Delta-G solvation = -25423.398313 eV Core-core repulsion = 21501.364776 eV Total energy + Delta-G solvation = -3922.033536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.38564 -40.60221 -38.41992 -37.22628 -36.75208 -35.25655 -32.28599 -32.02470 -31.46057 -30.50718 -28.90870 -26.95841 -25.79049 -23.91715 -23.34990 -22.56076 -21.53117 -20.33710 -19.75112 -18.87103 -17.73477 -17.54361 -17.24173 -16.68991 -16.48172 -16.40706 -15.57827 -15.30524 -14.87233 -14.55702 -14.13294 -13.79920 -13.54475 -13.42646 -13.04702 -12.70140 -12.68797 -12.12445 -12.10537 -11.89414 -11.72373 -11.45823 -11.38274 -11.35462 -11.32514 -10.99320 -10.79219 -10.54379 -10.40008 -10.10634 -9.99375 -9.72794 -9.70738 -8.86517 -8.65170 -6.96624 -6.13757 -3.54595 -0.43993 0.67182 1.10692 1.11276 2.78129 2.95605 3.08577 3.31969 3.35290 4.06460 4.29289 4.33342 4.35965 4.44537 4.56256 4.62709 4.69296 4.92493 5.07108 5.10662 5.19354 5.33800 5.38704 5.55658 5.57571 5.63544 5.64995 5.76905 5.86436 6.10833 6.17181 6.19776 6.31759 6.43418 6.51818 6.75128 6.94770 6.98976 7.43404 7.88995 7.96880 8.27943 8.83994 9.55885 9.96380 11.01824 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.002998 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.353020 B = 9336.859142 C = 9642.045287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 N -0.592 5.592 4 C -0.268 4.268 5 H 0.081 0.919 6 C 0.036 3.964 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.289 1.289 10 H -0.299 1.299 11 H -0.266 1.266 12 C 0.115 3.885 13 C 0.090 3.910 14 H 0.117 0.883 15 O -0.541 6.541 16 C 0.021 3.979 17 O -0.289 6.289 18 C 0.144 3.856 19 C -0.164 4.164 20 C -0.075 4.075 21 C -0.103 4.103 22 C -0.005 4.005 23 N 0.028 4.972 24 O -0.154 6.154 25 O -0.159 6.159 26 C -0.095 4.095 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.359 0.641 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -1.569 18.223 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.024 3.976 3 N -0.313 5.313 4 C -0.397 4.397 5 H 0.098 0.902 6 C -0.165 4.165 7 N -0.535 5.535 8 Si 0.701 3.299 9 H -0.217 1.217 10 H -0.227 1.227 11 H -0.190 1.190 12 C -0.013 4.013 13 C 0.028 3.972 14 H 0.135 0.865 15 O -0.344 6.344 16 C -0.054 4.054 17 O -0.201 6.201 18 C 0.097 3.903 19 C -0.183 4.183 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.088 4.088 23 N 0.549 4.451 24 O -0.371 6.371 25 O -0.375 6.375 26 C -0.115 4.115 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.204 0.796 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.387 -1.374 17.263 17.482 hybrid contribution -0.970 0.786 1.265 1.778 sum 1.417 -0.588 18.529 18.592 Atomic orbital electron populations 1.22354 0.99773 0.99238 1.01603 1.20872 0.91288 0.85933 0.99487 1.43935 1.74084 1.11479 1.01779 1.18819 1.38803 0.92772 0.89262 0.90157 1.25509 0.97780 0.96767 0.96481 1.69887 1.41883 1.06233 1.35448 0.87037 0.83372 0.78767 0.80750 1.21745 1.22651 1.19036 1.21736 0.91383 0.98463 0.89680 1.22993 1.00479 0.80810 0.92924 0.86500 1.86709 1.67017 1.20685 1.60031 1.24089 0.78347 1.02421 1.00585 1.86308 1.27351 1.71003 1.35440 1.18761 0.91778 0.92554 0.87253 1.21833 1.01299 0.99546 0.95580 1.20977 0.94165 0.97930 0.96275 1.20925 0.92840 0.98378 1.00053 1.20711 0.80904 1.08065 0.99126 1.43565 1.03261 0.98383 0.99927 1.94571 1.53011 1.41380 1.48130 1.94528 1.81134 1.47568 1.14271 1.20126 0.94740 1.00717 0.95928 0.94176 0.94230 0.92467 0.93146 0.93894 0.92581 0.91916 0.93698 0.79582 0.90777 0.91655 0.83474 0.83282 0.82944 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.22 37.16 0.38 -2.53 16 2 C 0.15 2.76 6.09 -4.04 -0.02 2.73 16 3 N -0.59 -12.79 2.00 -173.24 -0.35 -13.13 16 4 C -0.27 -7.04 9.91 -15.06 -0.15 -7.19 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 6 C 0.04 0.96 5.29 -17.43 -0.09 0.87 16 7 N -0.89 -26.02 13.97 55.49 0.78 -25.24 16 8 Si 0.87 20.33 25.09 -169.99 -4.26 16.07 16 9 H -0.29 -6.34 6.68 56.52 0.38 -5.96 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.11 2.11 4.19 -4.04 -0.02 2.10 16 13 C 0.09 1.50 3.52 -26.73 -0.09 1.40 16 14 H 0.12 2.36 8.14 -51.93 -0.42 1.93 16 15 O -0.54 -8.68 12.08 -40.06 -0.48 -9.17 16 16 C 0.02 0.27 4.38 37.16 0.16 0.44 16 17 O -0.29 -3.99 10.10 -24.27 -0.25 -4.23 16 18 C 0.14 1.68 6.69 -39.22 -0.26 1.42 16 19 C -0.16 -1.48 9.04 -39.43 -0.36 -1.83 16 20 C -0.07 -0.55 10.04 -39.60 -0.40 -0.95 16 21 C -0.10 -0.91 9.55 -39.56 -0.38 -1.28 16 22 C -0.01 -0.06 6.85 -79.98 -0.55 -0.61 16 23 N 0.03 0.37 4.45 33.95 0.15 0.52 16 24 O -0.15 -2.18 18.45 -29.46 -0.54 -2.73 16 25 O -0.16 -2.10 18.44 -29.46 -0.54 -2.65 16 26 C -0.10 -1.12 9.49 -39.43 -0.37 -1.50 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.04 0.68 6.95 -51.93 -0.36 0.32 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.28 3.36 -51.93 -0.17 1.10 16 34 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.36 4.22 8.79 45.56 0.40 4.62 16 36 H 0.07 0.90 7.65 -51.92 -0.40 0.50 16 37 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 38 H 0.15 1.08 6.30 -52.49 -0.33 0.75 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 1.08 7.61 -52.49 -0.40 0.68 16 41 H 0.16 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -31.06 349.82 -6.97 -38.03 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.59 Total: 4.18 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.15 Total: -6.94 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.58 Total: -37.85 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.82 Total: -18.77 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.26 Total: 16.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.06 -6.97 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299514913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.561 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds