Wall clock time and date at job start Tue Mar 31 2020 10:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00077 * 2 1 4 4 O 1.21570 * 120.00048 * 183.45534 * 3 2 1 5 5 C 1.47694 * 120.00087 * 3.45436 * 3 2 1 6 6 C 1.39659 * 120.15415 * 25.04497 * 5 3 2 7 7 C 1.38074 * 119.85087 * 180.02562 * 6 5 3 8 8 F 1.35099 * 119.91608 * 179.97438 * 7 6 5 9 9 C 1.38652 * 120.16420 * 359.97438 * 7 6 5 10 10 C 1.38187 * 120.31847 * 359.97438 * 9 7 6 11 11 C 1.38315 * 120.14279 * 359.76961 * 10 9 7 12 12 F 1.35101 * 120.08397 * 180.27574 * 11 10 9 13 13 C 1.46503 * 119.99739 * 179.97438 * 2 1 3 14 14 H 1.09003 * 110.88542 * 183.88547 * 13 2 1 15 15 C 1.55152 * 111.00431 * 60.00523 * 13 2 1 16 16 C 1.54330 * 102.94165 * 206.42452 * 15 13 2 17 17 N 1.47022 * 107.26961 * 22.18991 * 16 15 13 18 18 C 1.36943 * 125.64556 * 181.02941 * 17 16 15 19 19 H 1.07996 * 119.99563 * 175.14361 * 18 17 16 20 20 C 1.38808 * 119.99994 * 355.13930 * 18 17 16 21 21 N 1.31613 * 119.99838 * 156.55140 * 20 18 17 22 22 Si 1.86799 * 120.00243 * 336.27569 * 20 18 17 23 23 H 1.48497 * 109.47207 * 185.87865 * 22 20 18 24 24 H 1.48502 * 109.47335 * 305.87892 * 22 20 18 25 25 H 1.48504 * 109.46909 * 65.87658 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.28962 * 17 16 15 27 27 H 1.09001 * 109.47433 * 264.05528 * 1 2 3 28 28 H 1.09002 * 109.46942 * 24.05248 * 1 2 3 29 29 H 1.09010 * 109.47373 * 144.05173 * 1 2 3 30 30 H 1.07999 * 120.07235 * 0.02562 * 6 5 3 31 31 H 1.08003 * 119.83878 * 180.02562 * 9 7 6 32 32 H 1.07997 * 119.92950 * 180.02562 * 10 9 7 33 33 H 1.08996 * 110.72670 * 88.05818 * 15 13 2 34 34 H 1.09003 * 110.87402 * 324.85285 * 15 13 2 35 35 H 1.09001 * 109.87856 * 262.77641 * 16 15 13 36 36 H 1.08994 * 110.01410 * 141.68121 * 16 15 13 37 37 H 0.97007 * 120.00171 * 354.71557 * 21 20 18 38 38 H 1.08994 * 110.36747 * 94.48708 * 26 17 16 39 39 H 1.09004 * 110.36488 * 216.80397 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1681 -0.0635 5 6 1.4024 2.4451 0.0771 6 6 0.1327 2.4892 0.6569 7 6 -0.5504 3.6872 0.7252 8 9 -1.7790 3.7313 1.2854 9 6 0.0214 4.8450 0.2203 10 6 1.2778 4.8094 -0.3539 11 6 1.9758 3.6174 -0.4244 12 9 3.2064 3.5851 -0.9810 13 6 2.1974 -1.2688 0.0006 14 1 3.2717 -1.0973 0.0695 15 6 1.8484 -2.1130 -1.2535 16 6 2.1063 -3.5589 -0.7795 17 7 2.0263 -3.5578 0.6885 18 6 2.2160 -4.6453 1.4989 19 1 2.2131 -4.5258 2.5722 20 6 2.4119 -5.9010 0.9407 21 7 3.0344 -6.8361 1.6265 22 14 1.7851 -6.2662 -0.7807 23 1 1.9907 -7.7044 -1.0876 24 1 0.3372 -5.9454 -0.8587 25 1 2.5291 -5.4388 -1.7642 26 6 1.7019 -2.1935 1.1433 27 1 -0.3634 -0.1064 1.0221 28 1 -0.3633 0.9385 -0.4189 29 1 -0.3634 -0.8320 -0.6033 30 1 -0.3139 1.5883 1.0510 31 1 -0.5175 5.7793 0.2768 32 1 1.7174 5.7151 -0.7449 33 1 2.5043 -1.8571 -2.0856 34 1 0.8033 -1.9795 -1.5330 35 1 3.0980 -3.8815 -1.0965 36 1 1.3500 -4.2270 -1.1915 37 1 3.4236 -6.6265 2.4900 38 1 0.6262 -2.0857 1.2823 39 1 2.2295 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033149949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:13 Heat of formation + Delta-G solvation = -29.418707 kcal Electronic energy + Delta-G solvation = -25689.172335 eV Core-core repulsion = 21656.400492 eV Total energy + Delta-G solvation = -4032.771843 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.36462 -49.19755 -40.67026 -38.73753 -37.60433 -35.33734 -32.77829 -31.78098 -30.48949 -29.53497 -28.30286 -27.33371 -24.85754 -23.76765 -23.13268 -21.33449 -20.61520 -19.53685 -18.17875 -17.88335 -17.63927 -17.47978 -16.77483 -16.28735 -16.18972 -15.71876 -15.29650 -15.10037 -14.76761 -14.75667 -14.49348 -13.71367 -13.67506 -13.43352 -13.21580 -12.98448 -12.82654 -12.60622 -12.44278 -12.27763 -12.12460 -11.57223 -11.41531 -11.10524 -11.06320 -10.54857 -10.13901 -10.00799 -9.69027 -9.51910 -9.10280 -9.03356 -8.70965 -8.49966 -7.12473 -6.35483 -3.21719 0.13690 0.46065 2.37555 2.71648 3.08769 3.41871 3.49814 3.62394 3.68036 3.71194 3.94679 4.16339 4.37212 4.53505 4.62606 4.81603 4.92345 5.04493 5.07667 5.15338 5.28093 5.29994 5.35763 5.37069 5.43189 5.47351 5.52435 5.54459 5.79312 5.83221 6.14363 6.19719 6.30443 6.34081 6.49331 6.64104 6.72691 7.23815 7.61357 7.97055 8.30643 9.00505 9.53524 10.18318 11.14403 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.003376 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.201148 B = 8291.491225 C = 8792.817574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.592 5.592 3 C 0.557 3.443 4 O -0.519 6.519 5 C -0.138 4.138 6 C -0.111 4.111 7 C 0.080 3.920 8 F -0.131 7.131 9 C -0.102 4.102 10 C -0.136 4.136 11 C 0.148 3.852 12 F -0.112 7.112 13 C 0.124 3.876 14 H 0.114 0.886 15 C -0.140 4.140 16 C 0.119 3.881 17 N -0.608 5.608 18 C -0.329 4.329 19 H 0.080 0.920 20 C -0.016 4.016 21 N -0.918 5.918 22 Si 1.054 2.946 23 H -0.300 1.300 24 H -0.298 1.298 25 H -0.281 1.281 26 C 0.132 3.868 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 25.260 -5.432 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.324 5.324 3 C 0.344 3.656 4 O -0.395 6.395 5 C -0.142 4.142 6 C -0.130 4.130 7 C 0.060 3.940 8 F -0.110 7.110 9 C -0.121 4.121 10 C -0.155 4.155 11 C 0.128 3.872 12 F -0.090 7.090 13 C 0.021 3.979 14 H 0.132 0.868 15 C -0.178 4.178 16 C -0.006 4.006 17 N -0.336 5.336 18 C -0.456 4.456 19 H 0.098 0.902 20 C -0.217 4.217 21 N -0.559 5.559 22 Si 0.887 3.113 23 H -0.228 1.228 24 H -0.226 1.226 25 H -0.208 1.208 26 C 0.005 3.995 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.699 23.937 -6.512 26.288 hybrid contribution -0.144 1.236 1.198 1.728 sum -8.843 25.173 -5.314 27.205 Atomic orbital electron populations 1.22493 0.80018 1.03881 1.02320 1.47615 1.06922 1.05705 1.72117 1.17904 0.87088 0.83005 0.77619 1.90855 1.12901 1.86753 1.48989 1.19902 0.95688 0.94074 1.04582 1.22074 0.93340 0.98968 0.98596 1.17503 0.82351 0.94299 0.99824 1.91552 1.39485 1.97119 1.82798 1.21192 0.95256 0.98232 0.97377 1.20999 0.94886 0.97402 1.02172 1.17685 0.81335 0.93070 0.95140 1.91619 1.38667 1.96984 1.81727 1.22562 0.97867 0.80758 0.96734 0.86826 1.22952 1.01582 0.95907 0.97389 1.21925 0.99292 0.93578 0.85783 1.44758 1.83481 1.04788 1.00597 1.20106 1.48985 0.86200 0.90320 0.90233 1.25742 0.98766 0.91680 1.05495 1.70901 1.33768 1.35968 1.15232 0.84121 0.76217 0.74507 0.76453 1.22764 1.22602 1.20846 1.21797 0.97340 0.85368 0.95023 0.91382 0.89770 0.90101 0.81213 0.83222 0.82924 0.90836 0.91114 0.93317 0.95338 0.92688 0.95537 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 7.46 59.85 0.45 0.99 16 2 N -0.59 -8.21 2.91 -172.51 -0.50 -8.72 16 3 C 0.56 8.25 7.46 -12.40 -0.09 8.16 16 4 O -0.52 -9.69 15.11 5.30 0.08 -9.61 16 5 C -0.14 -1.57 5.52 -104.92 -0.58 -2.15 16 6 C -0.11 -0.98 7.49 -39.11 -0.29 -1.27 16 7 C 0.08 0.62 7.29 -39.49 -0.29 0.33 16 8 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 9 C -0.10 -0.63 10.01 -39.45 -0.39 -1.02 16 10 C -0.14 -0.96 10.01 -39.57 -0.40 -1.35 16 11 C 0.15 1.59 7.25 -38.97 -0.28 1.31 16 12 F -0.11 -1.48 15.85 2.25 0.04 -1.44 16 13 C 0.12 2.13 3.46 -65.66 -0.23 1.90 16 14 H 0.11 2.18 7.03 -51.93 -0.37 1.81 16 15 C -0.14 -2.33 6.52 -24.90 -0.16 -2.50 16 16 C 0.12 2.58 4.58 -3.06 -0.01 2.56 16 17 N -0.61 -14.82 3.34 -169.94 -0.57 -15.38 16 18 C -0.33 -9.42 10.49 -15.06 -0.16 -9.58 16 19 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 20 C -0.02 -0.49 5.47 -17.43 -0.10 -0.58 16 21 N -0.92 -28.86 13.70 55.49 0.76 -28.10 16 22 Si 1.05 26.31 24.71 -169.99 -4.20 22.11 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.30 -7.15 7.08 56.52 0.40 -6.75 16 25 H -0.28 -6.40 5.22 56.52 0.30 -6.10 16 26 C 0.13 2.60 6.79 -2.41 -0.02 2.59 16 27 H 0.07 0.60 6.96 -51.93 -0.36 0.24 16 28 H 0.08 0.65 4.95 -51.93 -0.26 0.40 16 29 H 0.08 0.80 6.39 -51.92 -0.33 0.47 16 30 H 0.17 1.30 4.42 -52.49 -0.23 1.07 16 31 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.03 6.37 -51.93 -0.33 0.70 16 35 H 0.05 1.12 6.85 -51.93 -0.36 0.76 16 36 H 0.03 0.64 4.24 -51.93 -0.22 0.42 16 37 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 38 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -34.38 315.35 -6.34 -40.72 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.18 Total: -2.66 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.55 Total: -0.62 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.31 Total: -52.20 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.07 Total: -2.49 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.20 Total: 22.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.38 -6.34 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033149949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.296 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds