Wall clock time and date at job start Tue Mar 31 2020 10:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99581 * 2 1 4 4 C 1.53004 * 109.47394 * 274.71272 * 3 2 1 5 5 H 1.09000 * 112.96284 * 67.43829 * 4 3 2 6 6 C 1.53948 * 113.76458 * 295.75879 * 4 3 2 7 7 C 1.53950 * 86.28597 * 222.08692 * 6 4 3 8 8 N 1.47578 * 86.11817 * 23.61106 * 7 6 4 9 9 C 1.36935 * 134.49306 * 155.35334 * 8 7 6 10 10 H 1.08003 * 119.99835 * 185.47308 * 9 8 7 11 11 C 1.38805 * 120.00189 * 5.48204 * 9 8 7 12 12 N 1.31625 * 119.99983 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00439 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47313 * 119.99552 * 13 11 9 16 16 H 1.48498 * 109.47027 * 240.00097 * 13 11 9 17 17 C 1.34771 * 120.00000 * 180.02562 * 2 1 3 18 18 O 1.21569 * 119.99610 * 184.69601 * 17 2 1 19 19 C 1.47729 * 119.99962 * 4.68935 * 17 2 1 20 20 C 1.39653 * 120.10662 * 149.30763 * 19 17 2 21 21 C 1.37853 * 119.92637 * 180.29943 * 20 19 17 22 22 C 1.38610 * 120.14364 * 359.44197 * 21 20 19 23 23 F 1.35093 * 119.88749 * 180.27558 * 22 21 20 24 24 C 1.38834 * 120.21922 * 0.56264 * 22 21 20 25 25 F 1.35098 * 119.96363 * 179.74146 * 24 22 21 26 26 C 1.38064 * 120.07476 * 359.71356 * 24 22 21 27 27 H 1.08996 * 109.47332 * 274.86915 * 1 2 3 28 28 H 1.09006 * 109.47048 * 34.87233 * 1 2 3 29 29 H 1.08997 * 109.46894 * 154.86657 * 1 2 3 30 30 H 1.09001 * 109.47642 * 34.71704 * 3 2 1 31 31 H 1.09001 * 109.47284 * 154.71054 * 3 2 1 32 32 H 1.08998 * 113.74595 * 336.43414 * 6 4 3 33 33 H 1.09006 * 113.73752 * 107.64210 * 6 4 3 34 34 H 1.09008 * 113.76238 * 137.90729 * 7 6 4 35 35 H 1.08997 * 113.77194 * 269.19130 * 7 6 4 36 36 H 0.97001 * 120.00037 * 180.02562 * 12 11 9 37 37 H 1.08005 * 120.03643 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.92356 * 179.72151 * 21 20 19 39 39 H 1.07997 * 120.07059 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3498 1.7697 -1.4376 5 1 1.4016 2.0616 -1.8890 6 6 3.2037 0.8491 -2.3282 7 6 3.8394 2.1384 -2.8793 8 7 3.4249 2.7661 -1.6096 9 6 3.8622 3.8412 -0.8829 10 1 3.4321 4.0491 0.0858 11 6 4.8580 4.6638 -1.3912 12 7 5.3823 4.4102 -2.5716 13 14 5.4541 6.1308 -0.4002 14 1 4.7097 6.1966 0.8831 15 1 6.9058 5.9846 -0.1239 16 1 5.2201 7.3776 -1.1721 17 6 2.1389 -1.1671 -0.0005 18 8 3.3516 -1.1689 0.0857 19 6 1.4040 -2.4443 -0.1057 20 6 1.9973 -3.5448 -0.7279 21 6 1.3058 -4.7330 -0.8295 22 6 0.0273 -4.8412 -0.3051 23 9 -0.6436 -6.0098 -0.4026 24 6 -0.5684 -3.7510 0.3146 25 9 -1.8168 -3.8608 0.8193 26 6 0.1137 -2.5550 0.4163 27 1 -0.3634 0.0872 1.0239 28 1 -0.3633 0.8432 -0.5876 29 1 -0.3633 -0.9304 -0.4365 30 1 1.6476 2.0058 0.5853 31 1 3.1838 1.1189 0.4390 32 1 3.8985 0.2206 -1.7711 33 1 2.6255 0.2928 -3.0661 34 1 4.9202 2.0758 -3.0061 35 1 3.3308 2.5390 -3.7561 36 1 6.0784 4.9848 -2.9266 37 1 2.9952 -3.4638 -1.1330 38 1 1.7630 -5.5827 -1.3147 39 1 -0.3496 -1.7071 0.8988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:37 Heat of formation + Delta-G solvation = -13.135062 kcal Electronic energy + Delta-G solvation = -25395.590996 eV Core-core repulsion = 21363.525264 eV Total energy + Delta-G solvation = -4032.065731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.84463 -48.91603 -40.63629 -38.57090 -37.51035 -35.55658 -32.26798 -31.71104 -30.89207 -28.43072 -27.81032 -26.89472 -24.09772 -23.59586 -23.25422 -22.19042 -20.00722 -19.01119 -18.16190 -18.03649 -17.44321 -16.73886 -16.70292 -16.30526 -15.86126 -15.60635 -15.31350 -15.01657 -14.71225 -14.49177 -14.17076 -14.03076 -13.61212 -13.49009 -13.03390 -12.81580 -12.63894 -12.39160 -12.26016 -12.02475 -11.40720 -11.38926 -11.04675 -10.89900 -10.69200 -10.42186 -9.97479 -9.83738 -9.67962 -9.54956 -9.40418 -9.13174 -8.78263 -8.44346 -6.84117 -5.74345 -3.06342 0.21745 0.55535 2.46581 2.89064 3.22626 3.37168 3.40350 3.45198 3.47993 3.88673 4.05464 4.24953 4.47911 4.54330 4.60526 4.92744 5.16223 5.17292 5.23704 5.28075 5.38645 5.45916 5.53826 5.54723 5.60399 5.74010 5.86883 5.92288 6.09008 6.25044 6.35513 6.49343 6.62474 6.74344 6.78404 7.29246 7.36896 7.52489 7.62857 8.01156 8.15788 9.07009 9.73729 10.63984 11.43287 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.002964 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.403846 B = 9443.296728 C = 9804.387746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.598 5.598 3 C 0.114 3.886 4 C 0.127 3.873 5 H 0.042 0.958 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.555 3.445 18 O -0.517 6.517 19 C -0.105 4.105 20 C -0.043 4.043 21 C -0.132 4.132 22 C 0.085 3.915 23 F -0.126 7.126 24 C 0.059 3.941 25 F -0.126 7.126 26 C -0.114 4.114 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.253 0.747 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 -17.894 3.959 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.331 5.331 3 C -0.009 4.009 4 C 0.019 3.981 5 H 0.059 0.941 6 C -0.199 4.199 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.342 3.658 18 O -0.393 6.393 19 C -0.108 4.108 20 C -0.061 4.061 21 C -0.150 4.150 22 C 0.065 3.935 23 F -0.105 7.105 24 C 0.038 3.962 25 F -0.105 7.105 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.431 -17.608 4.089 21.938 hybrid contribution -0.330 0.769 0.454 0.953 sum -12.761 -16.838 4.543 21.610 Atomic orbital electron populations 1.22528 0.80385 1.04222 1.01734 1.47683 1.06667 1.06426 1.72317 1.21913 0.97895 0.81951 0.99110 1.22512 0.92897 0.89934 0.92744 0.94089 1.23839 0.99498 0.97704 0.98820 1.22096 0.99356 0.86199 0.88348 1.45967 1.32368 1.31571 1.22645 1.19028 1.16104 1.01560 0.98428 0.90315 1.24798 0.99705 0.99048 0.96799 1.69850 1.29559 1.39613 1.17549 0.86089 0.78449 0.82515 0.78955 1.20472 1.21709 1.21817 1.17990 0.87141 0.83042 0.77587 1.90848 1.13000 1.86696 1.48737 1.19970 0.93849 0.95664 1.01352 1.21234 1.00293 0.89898 0.94721 1.21088 0.92394 1.00002 1.01556 1.17950 0.92249 0.81525 1.01820 1.91545 1.79824 1.44953 1.94138 1.17503 0.82301 0.94295 1.02064 1.91552 1.37312 1.96499 1.85114 1.22001 0.94200 0.96842 1.00200 0.91986 0.90456 0.89612 0.91102 0.88463 0.89721 0.93885 0.91563 0.95632 0.93726 0.82858 0.82897 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 8.82 59.85 0.53 1.02 16 2 N -0.60 -8.07 2.79 -182.73 -0.51 -8.58 16 3 C 0.11 1.96 5.46 -4.04 -0.02 1.94 16 4 C 0.13 2.54 4.59 -66.86 -0.31 2.23 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.19 7.22 -25.80 -0.19 -3.38 16 7 C 0.17 4.01 7.39 -2.97 -0.02 3.99 16 8 N -0.60 -15.28 3.57 -170.73 -0.61 -15.89 16 9 C -0.22 -6.21 10.51 -15.06 -0.16 -6.37 16 10 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.56 11.53 55.49 0.64 -26.92 16 13 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 C 0.56 7.93 6.93 -12.38 -0.09 7.84 16 18 O -0.52 -9.39 14.82 5.30 0.08 -9.31 16 19 C -0.10 -1.13 5.51 -104.97 -0.58 -1.71 16 20 C -0.04 -0.40 9.59 -39.19 -0.38 -0.78 16 21 C -0.13 -1.04 10.01 -39.59 -0.40 -1.44 16 22 C 0.09 0.79 7.31 -39.22 -0.29 0.50 16 23 F -0.13 -1.26 17.17 2.25 0.04 -1.22 16 24 C 0.06 0.55 7.30 -39.42 -0.29 0.26 16 25 F -0.13 -1.27 17.18 2.25 0.04 -1.24 16 26 C -0.11 -1.02 7.42 -39.13 -0.29 -1.31 16 27 H 0.06 0.44 7.49 -51.93 -0.39 0.05 16 28 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.09 0.66 4.57 -51.93 -0.24 0.42 16 30 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 31 H 0.10 1.97 7.23 -51.93 -0.38 1.60 16 32 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.77 7.42 -51.92 -0.39 1.39 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.15 1.40 7.93 -52.48 -0.42 0.98 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.17 1.22 4.67 -52.49 -0.24 0.98 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -32.92 332.31 -7.38 -40.29 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.47 Total: -1.83 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.56 Total: 2.51 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.48 Total: -51.39 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.92 -7.38 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.159 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds