Wall clock time and date at job start Tue Mar 31 2020 10:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99581 * 2 1 4 4 C 1.53004 * 109.47394 * 274.71272 * 3 2 1 5 5 H 1.09000 * 112.96284 * 67.43829 * 4 3 2 6 6 C 1.53948 * 113.76458 * 295.75879 * 4 3 2 7 7 C 1.53950 * 86.28597 * 222.08692 * 6 4 3 8 8 N 1.47578 * 86.11817 * 23.61106 * 7 6 4 9 9 C 1.36935 * 134.49306 * 155.35334 * 8 7 6 10 10 H 1.08003 * 119.99835 * 185.47308 * 9 8 7 11 11 C 1.38805 * 120.00189 * 5.48204 * 9 8 7 12 12 N 1.31625 * 119.99983 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00439 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47313 * 119.99552 * 13 11 9 16 16 H 1.48498 * 109.47027 * 240.00097 * 13 11 9 17 17 C 1.34771 * 120.00000 * 180.02562 * 2 1 3 18 18 O 1.21569 * 119.99610 * 184.69601 * 17 2 1 19 19 C 1.47729 * 119.99962 * 4.68935 * 17 2 1 20 20 C 1.39653 * 120.10662 * 149.30763 * 19 17 2 21 21 C 1.37853 * 119.92637 * 180.29943 * 20 19 17 22 22 C 1.38610 * 120.14364 * 359.44197 * 21 20 19 23 23 F 1.35093 * 119.88749 * 180.27558 * 22 21 20 24 24 C 1.38834 * 120.21922 * 0.56264 * 22 21 20 25 25 F 1.35098 * 119.96363 * 179.74146 * 24 22 21 26 26 C 1.38064 * 120.07476 * 359.71356 * 24 22 21 27 27 H 1.08996 * 109.47332 * 274.86915 * 1 2 3 28 28 H 1.09006 * 109.47048 * 34.87233 * 1 2 3 29 29 H 1.08997 * 109.46894 * 154.86657 * 1 2 3 30 30 H 1.09001 * 109.47642 * 34.71704 * 3 2 1 31 31 H 1.09001 * 109.47284 * 154.71054 * 3 2 1 32 32 H 1.08998 * 113.74595 * 336.43414 * 6 4 3 33 33 H 1.09006 * 113.73752 * 107.64210 * 6 4 3 34 34 H 1.09008 * 113.76238 * 137.90729 * 7 6 4 35 35 H 1.08997 * 113.77194 * 269.19130 * 7 6 4 36 36 H 0.97001 * 120.00037 * 180.02562 * 12 11 9 37 37 H 1.08005 * 120.03643 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.92356 * 179.72151 * 21 20 19 39 39 H 1.07997 * 120.07059 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3498 1.7697 -1.4376 5 1 1.4016 2.0616 -1.8890 6 6 3.2037 0.8491 -2.3282 7 6 3.8394 2.1384 -2.8793 8 7 3.4249 2.7661 -1.6096 9 6 3.8622 3.8412 -0.8829 10 1 3.4321 4.0491 0.0858 11 6 4.8580 4.6638 -1.3912 12 7 5.3823 4.4102 -2.5716 13 14 5.4541 6.1308 -0.4002 14 1 4.7097 6.1966 0.8831 15 1 6.9058 5.9846 -0.1239 16 1 5.2201 7.3776 -1.1721 17 6 2.1389 -1.1671 -0.0005 18 8 3.3516 -1.1689 0.0857 19 6 1.4040 -2.4443 -0.1057 20 6 1.9973 -3.5448 -0.7279 21 6 1.3058 -4.7330 -0.8295 22 6 0.0273 -4.8412 -0.3051 23 9 -0.6436 -6.0098 -0.4026 24 6 -0.5684 -3.7510 0.3146 25 9 -1.8168 -3.8608 0.8193 26 6 0.1137 -2.5550 0.4163 27 1 -0.3634 0.0872 1.0239 28 1 -0.3633 0.8432 -0.5876 29 1 -0.3633 -0.9304 -0.4365 30 1 1.6476 2.0058 0.5853 31 1 3.1838 1.1189 0.4390 32 1 3.8985 0.2206 -1.7711 33 1 2.6255 0.2928 -3.0661 34 1 4.9202 2.0758 -3.0061 35 1 3.3308 2.5390 -3.7561 36 1 6.0784 4.9848 -2.9266 37 1 2.9952 -3.4638 -1.1330 38 1 1.7630 -5.5827 -1.3147 39 1 -0.3496 -1.7071 0.8988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:36 Heat of formation + Delta-G solvation = -32.824525 kcal Electronic energy + Delta-G solvation = -25396.444795 eV Core-core repulsion = 21363.525264 eV Total energy + Delta-G solvation = -4032.919530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.58348 -49.65805 -41.65202 -39.83874 -38.86209 -36.70488 -34.24829 -32.66317 -31.66818 -29.84060 -29.64419 -27.85111 -25.38662 -25.06539 -24.34887 -23.49368 -21.12576 -20.72492 -19.00923 -18.90099 -18.54948 -18.24582 -17.50740 -17.27229 -17.10813 -16.90374 -16.38491 -16.06527 -15.83088 -15.74010 -15.39947 -15.24490 -15.02514 -14.40802 -14.16258 -13.94941 -13.77829 -13.60690 -13.40310 -13.28352 -12.95401 -12.84384 -12.57118 -12.48181 -12.24069 -12.15070 -11.82507 -11.56389 -11.26619 -11.00632 -10.85168 -10.14867 -9.93553 -9.65770 -8.87257 -7.88520 -5.21148 -0.55741 -0.12938 1.45458 1.47128 1.53287 1.56899 1.84191 2.38140 2.49841 2.63714 3.12379 3.26982 3.34330 3.43181 3.54974 3.83171 3.88882 3.94238 4.19319 4.24248 4.32013 4.46437 4.48811 4.58148 4.61902 4.73646 4.78950 4.85328 4.89144 4.90612 5.00567 5.06767 5.11735 5.23796 5.44848 5.54888 5.56268 5.74704 5.95739 6.34202 6.93549 7.07474 7.63749 8.59967 9.29806 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.002964 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.403846 B = 9443.296728 C = 9804.387746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.596 5.596 3 C 0.128 3.872 4 C 0.134 3.866 5 H 0.062 0.938 6 C -0.134 4.134 7 C 0.159 3.841 8 N -0.629 5.629 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.553 3.447 18 O -0.566 6.566 19 C -0.116 4.116 20 C -0.044 4.044 21 C -0.118 4.118 22 C 0.083 3.917 23 F -0.130 7.130 24 C 0.054 3.946 25 F -0.130 7.130 26 C -0.100 4.100 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.020 0.980 36 H 0.246 0.754 37 H 0.153 0.847 38 H 0.180 0.820 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 -18.985 4.921 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.327 5.327 3 C 0.004 3.996 4 C 0.027 3.973 5 H 0.079 0.921 6 C -0.172 4.172 7 C 0.033 3.967 8 N -0.355 5.355 9 C -0.354 4.354 10 H 0.106 0.894 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.805 3.195 14 H -0.185 1.185 15 H -0.224 1.224 16 H -0.220 1.220 17 C 0.342 3.658 18 O -0.445 6.445 19 C -0.120 4.120 20 C -0.063 4.063 21 C -0.136 4.136 22 C 0.062 3.938 23 F -0.109 7.109 24 C 0.034 3.966 25 F -0.108 7.108 26 C -0.118 4.118 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -14.922 -18.729 5.075 24.478 hybrid contribution 0.346 0.994 0.147 1.062 sum -14.576 -17.735 5.222 23.543 Atomic orbital electron populations 1.22871 0.77247 1.05553 1.03848 1.47685 1.08421 1.04845 1.71791 1.21447 0.97134 0.84043 0.96955 1.22684 0.92238 0.87767 0.94609 0.92054 1.23540 0.98912 0.95915 0.98821 1.22028 0.97392 0.88889 0.88362 1.46312 1.34465 1.31858 1.22881 1.19466 1.15491 1.01553 0.98910 0.89365 1.25656 1.00578 1.02165 0.98087 1.70042 1.30424 1.40759 1.19419 0.85035 0.77427 0.78865 0.78188 1.18509 1.22379 1.22028 1.18485 0.86733 0.84139 0.76396 1.90828 1.15271 1.87464 1.50978 1.19694 0.94564 0.94350 1.03386 1.21311 1.00399 0.90062 0.94516 1.21260 0.91633 1.00123 1.00588 1.18141 0.92605 0.81325 1.01708 1.91541 1.79968 1.45221 1.94149 1.17549 0.82245 0.94508 1.02321 1.91547 1.37556 1.96522 1.85220 1.22033 0.93188 0.97286 0.99340 0.89338 0.89720 0.87862 0.89498 0.92076 0.91154 0.90638 0.95277 0.96211 0.94475 0.82941 0.80234 0.79507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 8.82 127.77 1.13 1.78 16 2 N -0.60 -14.82 2.79 -850.32 -2.37 -17.19 16 3 C 0.13 4.26 5.46 86.38 0.47 4.73 16 4 C 0.13 5.17 4.59 45.09 0.21 5.38 16 5 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 6 C -0.13 -5.27 7.22 31.26 0.23 -5.04 16 7 C 0.16 7.92 7.39 86.48 0.64 8.55 16 8 N -0.63 -32.36 3.57 -694.07 -2.48 -34.84 16 9 C -0.23 -12.63 10.51 84.03 0.88 -11.75 16 10 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 11 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 12 N -0.96 -59.41 11.53 21.65 0.25 -59.16 16 13 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 17 C 0.55 15.13 6.93 86.75 0.60 15.73 16 18 O -0.57 -20.78 14.82 -3.93 -0.06 -20.84 16 19 C -0.12 -2.28 5.51 -20.09 -0.11 -2.39 16 20 C -0.04 -0.74 9.59 22.52 0.22 -0.53 16 21 C -0.12 -1.54 10.01 22.27 0.22 -1.32 16 22 C 0.08 1.31 7.31 22.50 0.16 1.47 16 23 F -0.13 -2.29 17.17 44.97 0.77 -1.52 16 24 C 0.05 0.87 7.30 22.37 0.16 1.03 16 25 F -0.13 -2.28 17.18 44.97 0.77 -1.50 16 26 C -0.10 -1.49 7.42 22.56 0.17 -1.32 16 27 H 0.09 0.87 7.49 -2.39 -0.02 0.85 16 28 H 0.08 1.16 8.11 -2.38 -0.02 1.14 16 29 H 0.10 1.17 4.57 -2.39 -0.01 1.16 16 30 H 0.09 2.59 8.11 -2.39 -0.02 2.58 16 31 H 0.06 2.51 7.23 -2.39 -0.02 2.49 16 32 H 0.07 3.01 6.67 -2.39 -0.02 3.00 16 33 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.03 1.64 7.42 -2.38 -0.02 1.62 16 35 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.15 2.62 7.93 -2.91 -0.02 2.60 16 38 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.19 1.99 4.67 -2.91 -0.01 1.98 16 Total: -1.00 -73.90 332.31 5.45 -68.46 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.09 Total: 5.59 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 5.44 Total: 12.60 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.60 Total: -111.19 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.54 Total: -3.02 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -73.90 5.45 -68.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.631 kcal (2) G-P(sol) polarization free energy of solvation -73.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds