Wall clock time and date at job start Tue Mar 31 2020 10:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00567 * 2 1 4 4 C 1.53002 * 109.46800 * 84.29143 * 3 2 1 5 5 H 1.08999 * 113.04411 * 295.12337 * 4 3 2 6 6 C 1.53945 * 113.76828 * 66.87990 * 4 3 2 7 7 C 1.53942 * 86.29207 * 137.90773 * 6 4 3 8 8 N 1.47576 * 86.24001 * 336.33513 * 7 6 4 9 9 C 1.36944 * 134.49282 * 204.70385 * 8 7 6 10 10 H 1.07997 * 120.00048 * 184.77832 * 9 8 7 11 11 C 1.38814 * 119.99824 * 4.76968 * 9 8 7 12 12 N 1.31614 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99794 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47058 * 59.99951 * 13 11 9 15 15 H 1.48502 * 109.47124 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47353 * 300.00062 * 13 11 9 17 17 C 1.34776 * 119.99637 * 180.02562 * 2 1 3 18 18 O 1.21575 * 120.00395 * 182.72788 * 17 2 1 19 19 C 1.47701 * 119.99936 * 2.73161 * 17 2 1 20 20 C 1.39653 * 120.15450 * 23.99848 * 19 17 2 21 21 C 1.38072 * 119.84933 * 179.74701 * 20 19 17 22 22 F 1.35095 * 119.91637 * 180.27456 * 21 20 19 23 23 C 1.38655 * 120.16640 * 0.52489 * 21 20 19 24 24 C 1.38191 * 120.31553 * 359.72202 * 23 21 20 25 25 C 1.38318 * 120.14304 * 0.02562 * 24 23 21 26 26 F 1.35092 * 120.08192 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46932 * 83.83477 * 1 2 3 28 28 H 1.08993 * 109.47216 * 203.83994 * 1 2 3 29 29 H 1.09006 * 109.46423 * 323.84075 * 1 2 3 30 30 H 1.08999 * 109.47050 * 324.29660 * 3 2 1 31 31 H 1.09003 * 109.47734 * 204.29123 * 3 2 1 32 32 H 1.09000 * 113.74617 * 23.55419 * 6 4 3 33 33 H 1.09005 * 113.83335 * 252.26352 * 6 4 3 34 34 H 1.08999 * 113.77184 * 90.69168 * 7 6 4 35 35 H 1.09005 * 113.76621 * 221.97877 * 7 6 4 36 36 H 0.96995 * 119.99903 * 180.02562 * 12 11 9 37 37 H 1.07996 * 120.07473 * 359.97060 * 20 19 17 38 38 H 1.07997 * 119.84508 * 179.70495 * 23 21 20 39 39 H 1.07995 * 119.92648 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3284 1.7819 1.4354 5 1 1.3693 2.0364 1.8866 6 6 3.2212 0.9029 2.3298 7 6 3.8008 2.2206 2.8750 8 7 3.3620 2.8268 1.6031 9 6 3.7556 3.9167 0.8732 10 1 3.2081 4.1988 -0.0139 11 6 4.8581 4.6589 1.2738 12 7 5.5256 4.3149 2.3547 13 14 5.3945 6.1459 0.2786 14 1 4.2903 7.1379 0.2365 15 1 6.5883 6.7612 0.9123 16 1 5.7311 5.7210 -1.1040 17 6 2.1388 -1.1672 -0.0005 18 8 3.3535 -1.1680 0.0496 19 6 1.4015 -2.4456 -0.0621 20 6 0.1168 -2.4888 -0.6079 21 6 -0.5648 -3.6882 -0.6670 22 9 -1.8054 -3.7326 -1.1998 23 6 0.0189 -4.8462 -0.1763 24 6 1.2878 -4.8103 0.3700 25 6 1.9842 -3.6168 0.4310 26 9 3.2244 -3.5831 0.9657 27 1 -0.3633 0.1104 -1.0217 28 1 -0.3633 -0.9399 0.4153 29 1 -0.3632 0.8298 0.6064 30 1 1.6566 2.0006 -0.5997 31 1 3.1905 1.1149 -0.4227 32 1 3.9422 0.3023 1.7753 33 1 2.6692 0.3260 3.0719 34 1 3.2743 2.6039 3.7491 35 1 4.8832 2.2045 3.0037 36 1 6.2957 4.8337 2.6348 37 1 -0.3412 -1.5869 -0.9861 38 1 -0.5207 -5.7806 -0.2208 39 1 1.7366 -5.7161 0.7500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:41 Heat of formation + Delta-G solvation = -8.094346 kcal Electronic energy + Delta-G solvation = -25713.918657 eV Core-core repulsion = 21682.071508 eV Total energy + Delta-G solvation = -4031.847149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.30489 -49.04671 -40.45988 -38.55300 -37.48581 -35.50097 -32.39333 -31.88845 -30.38018 -28.47139 -27.76364 -26.92312 -24.31483 -23.30008 -23.18349 -22.11728 -20.00134 -18.94574 -17.98475 -17.72659 -17.49983 -16.75100 -16.50101 -16.12604 -15.77218 -15.63590 -15.37141 -14.75964 -14.66395 -14.56186 -14.01190 -13.79724 -13.57332 -13.46116 -13.05649 -12.85801 -12.55610 -12.30663 -12.19678 -11.99789 -11.37464 -11.30871 -10.97796 -10.82883 -10.62534 -10.42876 -9.90748 -9.73586 -9.65077 -9.62078 -9.46401 -8.94592 -8.70852 -8.40294 -6.79863 -5.68511 -3.02469 0.25905 0.55825 2.53639 2.91255 3.27540 3.43196 3.46905 3.48610 3.71893 3.80757 4.05926 4.27127 4.46867 4.51753 4.63336 4.91431 5.15530 5.18359 5.26804 5.37665 5.44791 5.49617 5.51866 5.56089 5.63084 5.64529 5.89773 5.97194 6.13576 6.30127 6.41758 6.55857 6.68652 6.78674 6.86726 7.33922 7.40577 7.59071 7.70653 8.07154 8.21337 9.10603 9.77660 10.68582 11.47321 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.003356 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.853982 B = 8342.178072 C = 8895.809006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.127 3.873 5 H 0.042 0.958 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.224 4.224 10 H 0.077 0.923 11 C -0.006 4.006 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.552 3.448 18 O -0.506 6.506 19 C -0.136 4.136 20 C -0.116 4.116 21 C 0.077 3.923 22 F -0.133 7.133 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.150 3.850 26 F -0.110 7.110 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.253 0.747 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 -19.052 -4.843 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.332 5.332 3 C -0.006 4.006 4 C 0.019 3.981 5 H 0.059 0.941 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.741 3.259 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.339 3.661 18 O -0.381 6.381 19 C -0.140 4.140 20 C -0.135 4.135 21 C 0.057 3.943 22 F -0.112 7.112 23 C -0.123 4.123 24 C -0.155 4.155 25 C 0.129 3.871 26 F -0.088 7.088 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.189 0.811 38 H 0.166 0.834 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.266 -18.715 -4.879 24.032 hybrid contribution 0.004 0.970 -0.417 1.056 sum -14.261 -17.745 -5.296 23.373 Atomic orbital electron populations 1.22512 0.80488 1.04034 1.01587 1.47668 1.06583 1.06335 1.72614 1.21910 0.97799 0.81805 0.99101 1.22583 0.93259 0.89367 0.92846 0.94068 1.23803 0.99466 0.97546 0.98687 1.22273 1.00262 0.86531 0.87948 1.45967 1.36274 1.28600 1.21773 1.18923 1.08643 1.02334 1.05283 0.90544 1.24777 0.97865 0.99659 0.97994 1.69817 1.21078 1.40870 1.24746 0.86231 0.77875 0.82455 0.79352 1.21300 1.21588 1.21071 1.17867 0.87229 0.82934 0.78114 1.90885 1.12669 1.86505 1.48045 1.20002 0.95348 0.94390 1.04299 1.22127 0.93409 0.98826 0.99092 1.17505 0.81872 0.94356 1.00517 1.91537 1.38541 1.97144 1.83945 1.21164 0.95162 0.98196 0.97752 1.21007 0.94816 0.97428 1.02261 1.17706 0.81181 0.93057 0.95178 1.91634 1.37689 1.96962 1.82466 0.91942 0.89708 0.90479 0.91091 0.88566 0.89447 0.94113 0.96159 0.90453 0.93656 0.81133 0.83358 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 8.73 59.85 0.52 1.06 16 2 N -0.60 -8.68 2.81 -182.75 -0.51 -9.20 16 3 C 0.12 2.11 5.41 -4.04 -0.02 2.09 16 4 C 0.13 2.65 4.58 -66.67 -0.31 2.35 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.16 -3.36 7.27 -25.80 -0.19 -3.54 16 7 C 0.15 3.91 7.63 -2.98 -0.02 3.88 16 8 N -0.60 -15.75 3.59 -169.67 -0.61 -16.36 16 9 C -0.22 -6.35 10.53 -15.06 -0.16 -6.51 16 10 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -28.00 11.30 55.49 0.63 -27.37 16 13 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.55 8.77 7.13 -12.39 -0.09 8.69 16 18 O -0.51 -10.22 13.56 5.30 0.07 -10.15 16 19 C -0.14 -1.66 5.56 -104.92 -0.58 -2.25 16 20 C -0.12 -1.06 7.50 -39.11 -0.29 -1.35 16 21 C 0.08 0.63 7.29 -39.49 -0.29 0.34 16 22 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 23 C -0.10 -0.71 10.01 -39.44 -0.39 -1.10 16 24 C -0.14 -1.09 10.01 -39.57 -0.40 -1.48 16 25 C 0.15 1.77 7.25 -38.97 -0.28 1.48 16 26 F -0.11 -1.61 15.84 2.25 0.04 -1.58 16 27 H 0.06 0.46 7.29 -51.93 -0.38 0.08 16 28 H 0.08 0.69 4.80 -51.93 -0.25 0.44 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 31 H 0.10 2.06 7.29 -51.93 -0.38 1.68 16 32 H 0.09 2.03 6.57 -51.93 -0.34 1.69 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 2.16 6.94 -51.93 -0.36 1.80 16 36 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.17 1.28 4.29 -52.49 -0.23 1.06 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -34.28 329.72 -7.43 -41.71 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.44 Total: -1.83 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.60 Total: 3.39 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.49 Total: -52.92 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.28 -7.43 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.618 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds