Wall clock time and date at job start Tue Mar 31 2020 10:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00567 * 2 1 4 4 C 1.53002 * 109.46800 * 84.29143 * 3 2 1 5 5 H 1.08999 * 113.04411 * 295.12337 * 4 3 2 6 6 C 1.53945 * 113.76828 * 66.87990 * 4 3 2 7 7 C 1.53942 * 86.29207 * 137.90773 * 6 4 3 8 8 N 1.47576 * 86.24001 * 336.33513 * 7 6 4 9 9 C 1.36944 * 134.49282 * 204.70385 * 8 7 6 10 10 H 1.07997 * 120.00048 * 184.77832 * 9 8 7 11 11 C 1.38814 * 119.99824 * 4.76968 * 9 8 7 12 12 N 1.31614 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99794 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47058 * 59.99951 * 13 11 9 15 15 H 1.48502 * 109.47124 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47353 * 300.00062 * 13 11 9 17 17 C 1.34776 * 119.99637 * 180.02562 * 2 1 3 18 18 O 1.21575 * 120.00395 * 182.72788 * 17 2 1 19 19 C 1.47701 * 119.99936 * 2.73161 * 17 2 1 20 20 C 1.39653 * 120.15450 * 23.99848 * 19 17 2 21 21 C 1.38072 * 119.84933 * 179.74701 * 20 19 17 22 22 F 1.35095 * 119.91637 * 180.27456 * 21 20 19 23 23 C 1.38655 * 120.16640 * 0.52489 * 21 20 19 24 24 C 1.38191 * 120.31553 * 359.72202 * 23 21 20 25 25 C 1.38318 * 120.14304 * 0.02562 * 24 23 21 26 26 F 1.35092 * 120.08192 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46932 * 83.83477 * 1 2 3 28 28 H 1.08993 * 109.47216 * 203.83994 * 1 2 3 29 29 H 1.09006 * 109.46423 * 323.84075 * 1 2 3 30 30 H 1.08999 * 109.47050 * 324.29660 * 3 2 1 31 31 H 1.09003 * 109.47734 * 204.29123 * 3 2 1 32 32 H 1.09000 * 113.74617 * 23.55419 * 6 4 3 33 33 H 1.09005 * 113.83335 * 252.26352 * 6 4 3 34 34 H 1.08999 * 113.77184 * 90.69168 * 7 6 4 35 35 H 1.09005 * 113.76621 * 221.97877 * 7 6 4 36 36 H 0.96995 * 119.99903 * 180.02562 * 12 11 9 37 37 H 1.07996 * 120.07473 * 359.97060 * 20 19 17 38 38 H 1.07997 * 119.84508 * 179.70495 * 23 21 20 39 39 H 1.07995 * 119.92648 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3284 1.7819 1.4354 5 1 1.3693 2.0364 1.8866 6 6 3.2212 0.9029 2.3298 7 6 3.8008 2.2206 2.8750 8 7 3.3620 2.8268 1.6031 9 6 3.7556 3.9167 0.8732 10 1 3.2081 4.1988 -0.0139 11 6 4.8581 4.6589 1.2738 12 7 5.5256 4.3149 2.3547 13 14 5.3945 6.1459 0.2786 14 1 4.2903 7.1379 0.2365 15 1 6.5883 6.7612 0.9123 16 1 5.7311 5.7210 -1.1040 17 6 2.1388 -1.1672 -0.0005 18 8 3.3535 -1.1680 0.0496 19 6 1.4015 -2.4456 -0.0621 20 6 0.1168 -2.4888 -0.6079 21 6 -0.5648 -3.6882 -0.6670 22 9 -1.8054 -3.7326 -1.1998 23 6 0.0189 -4.8462 -0.1763 24 6 1.2878 -4.8103 0.3700 25 6 1.9842 -3.6168 0.4310 26 9 3.2244 -3.5831 0.9657 27 1 -0.3633 0.1104 -1.0217 28 1 -0.3633 -0.9399 0.4153 29 1 -0.3632 0.8298 0.6064 30 1 1.6566 2.0006 -0.5997 31 1 3.1905 1.1149 -0.4227 32 1 3.9422 0.3023 1.7753 33 1 2.6692 0.3260 3.0719 34 1 3.2743 2.6039 3.7491 35 1 4.8832 2.2045 3.0037 36 1 6.2957 4.8337 2.6348 37 1 -0.3412 -1.5869 -0.9861 38 1 -0.5207 -5.7806 -0.2208 39 1 1.7366 -5.7161 0.7500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:40 Heat of formation + Delta-G solvation = -29.716747 kcal Electronic energy + Delta-G solvation = -25714.856275 eV Core-core repulsion = 21682.071508 eV Total energy + Delta-G solvation = -4032.784767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.99872 -49.94367 -41.55807 -39.79029 -38.93734 -36.73069 -34.27457 -33.00227 -31.12027 -29.87997 -29.75168 -27.92782 -25.47092 -25.17218 -24.20004 -23.39672 -21.17306 -20.74833 -18.95605 -18.59649 -18.57121 -18.32150 -17.47997 -17.17177 -17.02245 -16.76062 -16.39709 -16.31054 -15.84072 -15.50803 -15.39550 -15.24569 -14.96963 -14.23566 -14.17243 -14.05985 -13.79017 -13.62707 -13.40780 -13.23446 -12.91301 -12.78429 -12.57332 -12.51435 -12.34625 -12.09899 -11.80227 -11.62518 -11.33077 -10.99322 -10.82352 -10.31110 -9.80986 -9.60235 -8.89326 -7.87033 -5.22448 -0.50890 -0.12754 1.44031 1.48919 1.54368 1.58565 1.80651 2.37842 2.48809 2.97782 3.05472 3.26396 3.34124 3.41347 3.58069 3.84451 3.90108 3.96682 4.14098 4.20969 4.28453 4.44359 4.47893 4.57515 4.72356 4.72949 4.80252 4.84526 4.86336 4.88131 4.96061 5.00826 5.06177 5.22867 5.41689 5.53437 5.63195 5.73831 5.95509 6.28666 6.91424 7.04223 7.62496 8.58935 9.29248 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.003356 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.853982 B = 8342.178072 C = 8895.809006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.596 5.596 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.067 0.933 6 C -0.135 4.135 7 C 0.150 3.850 8 N -0.628 5.628 9 C -0.230 4.230 10 H 0.089 0.911 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.273 1.273 15 H -0.297 1.297 16 H -0.277 1.277 17 C 0.545 3.455 18 O -0.564 6.564 19 C -0.156 4.156 20 C -0.108 4.108 21 C 0.081 3.919 22 F -0.130 7.130 23 C -0.083 4.083 24 C -0.123 4.123 25 C 0.119 3.881 26 F -0.137 7.137 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.246 0.754 37 H 0.188 0.812 38 H 0.186 0.814 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -20.585 -6.173 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.327 5.327 3 C 0.006 3.994 4 C 0.030 3.970 5 H 0.084 0.916 6 C -0.173 4.173 7 C 0.024 3.976 8 N -0.355 5.355 9 C -0.358 4.358 10 H 0.107 0.893 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.808 3.192 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.203 1.203 17 C 0.335 3.665 18 O -0.444 6.444 19 C -0.160 4.160 20 C -0.126 4.126 21 C 0.062 3.938 22 F -0.108 7.108 23 C -0.101 4.101 24 C -0.142 4.142 25 C 0.099 3.901 26 F -0.115 7.115 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.205 0.795 38 H 0.204 0.796 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.013 -20.272 -6.232 27.825 hybrid contribution 1.006 1.310 -0.015 1.651 sum -17.007 -18.963 -6.247 26.227 Atomic orbital electron populations 1.22895 0.77013 1.05502 1.03911 1.47676 1.08532 1.04611 1.71923 1.21445 0.96886 0.83952 0.97078 1.22738 0.92805 0.86953 0.94531 0.91588 1.23504 0.99041 0.95912 0.98821 1.22190 0.98192 0.88939 0.88269 1.46298 1.38010 1.29127 1.22054 1.19401 1.08457 1.02419 1.05511 0.89327 1.25694 0.98379 1.03032 0.99388 1.70039 1.21598 1.42208 1.26743 0.85127 0.77255 0.78990 0.77809 1.19848 1.22352 1.20293 1.18498 0.86852 0.84362 0.76836 1.90854 1.15315 1.87437 1.50768 1.19712 0.96585 0.92599 1.07081 1.22173 0.92030 1.00191 0.98228 1.17554 0.81801 0.94385 1.00089 1.91559 1.38309 1.97109 1.83853 1.21577 0.94285 0.99204 0.95077 1.21283 0.94833 0.96774 1.01268 1.18209 0.80795 0.94571 0.96565 1.91563 1.39620 1.97169 1.83198 0.88960 0.87842 0.89636 0.89111 0.92624 0.91784 0.91357 0.96058 0.94275 0.94468 0.79497 0.79627 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 8.73 127.77 1.12 1.87 16 2 N -0.60 -16.61 2.81 -850.36 -2.39 -19.00 16 3 C 0.13 4.69 5.41 86.38 0.47 5.16 16 4 C 0.14 5.63 4.58 45.03 0.21 5.83 16 5 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 6 C -0.13 -5.90 7.27 31.25 0.23 -5.67 16 7 C 0.15 7.85 7.63 86.48 0.66 8.51 16 8 N -0.63 -33.65 3.59 -690.70 -2.48 -36.13 16 9 C -0.23 -13.18 10.53 84.03 0.88 -12.30 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.96 -60.74 11.30 21.65 0.24 -60.50 16 13 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 15 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 C 0.55 17.51 7.13 86.74 0.62 18.13 16 18 O -0.56 -24.16 13.56 -3.95 -0.05 -24.21 16 19 C -0.16 -3.64 5.56 -20.06 -0.11 -3.75 16 20 C -0.11 -1.64 7.50 22.57 0.17 -1.47 16 21 C 0.08 0.99 7.29 22.33 0.16 1.16 16 22 F -0.13 -1.61 17.26 44.97 0.78 -0.83 16 23 C -0.08 -0.76 10.01 22.36 0.22 -0.53 16 24 C -0.12 -1.60 10.01 22.28 0.22 -1.37 16 25 C 0.12 2.73 7.25 22.67 0.16 2.89 16 26 F -0.14 -4.21 15.84 44.97 0.71 -3.50 16 27 H 0.09 0.97 7.29 -2.39 -0.02 0.95 16 28 H 0.10 1.30 4.80 -2.39 -0.01 1.29 16 29 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 30 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 31 H 0.06 2.48 7.29 -2.39 -0.02 2.46 16 32 H 0.06 3.14 6.57 -2.39 -0.02 3.13 16 33 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 2.33 6.94 -2.38 -0.02 2.31 16 36 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.19 2.09 4.29 -2.91 -0.01 2.08 16 38 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -80.13 329.72 5.41 -74.72 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.09 Total: 5.62 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.48 Total: 14.64 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.62 Total: -115.63 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.49 Total: -4.33 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -80.13 5.41 -74.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.006 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds