Wall clock time and date at job start Tue Mar 31 2020 10:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00094 * 2 1 4 4 C 1.53003 * 109.47403 * 274.50351 * 3 2 1 5 5 H 1.08998 * 112.96079 * 64.96336 * 4 3 2 6 6 C 1.53944 * 113.76909 * 293.28324 * 4 3 2 7 7 C 1.53947 * 86.29078 * 222.09083 * 6 4 3 8 8 N 1.47579 * 113.76854 * 196.64165 * 4 3 2 9 9 C 1.36936 * 134.49064 * 318.92722 * 8 4 3 10 10 H 1.07990 * 120.00348 * 6.18403 * 9 8 4 11 11 C 1.38816 * 119.99617 * 186.18238 * 9 8 4 12 12 N 1.31620 * 120.00382 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47380 * 89.99572 * 13 11 9 15 15 H 1.48497 * 109.47354 * 210.00090 * 13 11 9 16 16 H 1.48501 * 109.46840 * 330.00037 * 13 11 9 17 17 C 1.34783 * 119.99936 * 180.02562 * 2 1 3 18 18 O 1.21573 * 119.99957 * 185.15296 * 17 2 1 19 19 C 1.47697 * 119.99759 * 5.15184 * 17 2 1 20 20 C 1.39657 * 120.15398 * 311.55728 * 19 17 2 21 21 C 1.38066 * 119.84956 * 180.25576 * 20 19 17 22 22 F 1.35101 * 119.91835 * 180.02562 * 21 20 19 23 23 C 1.38657 * 120.16634 * 0.02562 * 21 20 19 24 24 C 1.38184 * 120.31677 * 0.02562 * 23 21 20 25 25 C 1.38309 * 120.14463 * 359.97438 * 24 23 21 26 26 F 1.35102 * 120.08786 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.46921 * 270.63756 * 1 2 3 28 28 H 1.09000 * 109.46834 * 30.64359 * 1 2 3 29 29 H 1.09001 * 109.46913 * 150.63331 * 1 2 3 30 30 H 1.09003 * 109.47346 * 34.50389 * 3 2 1 31 31 H 1.09000 * 109.46913 * 154.50336 * 3 2 1 32 32 H 1.09000 * 113.74185 * 336.43880 * 6 4 3 33 33 H 1.08998 * 113.74324 * 107.63600 * 6 4 3 34 34 H 1.08999 * 113.76578 * 137.90971 * 7 6 4 35 35 H 1.09001 * 113.76496 * 269.19551 * 7 6 4 36 36 H 0.96997 * 120.00498 * 180.02562 * 12 11 9 37 37 H 1.07993 * 120.07656 * 0.25348 * 20 19 17 38 38 H 1.08002 * 119.84493 * 179.97438 * 23 21 20 39 39 H 1.07999 * 119.92849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3545 1.7671 -1.4381 5 1 1.4032 2.0176 -1.9075 6 6 3.2603 0.8767 -2.3079 7 6 3.8528 2.1875 -2.8563 8 7 3.3888 2.8076 -1.5974 9 6 3.7661 3.9050 -0.8703 10 1 3.3181 4.0940 0.0939 11 6 4.7244 4.7745 -1.3729 12 7 5.2701 4.5445 -2.5483 13 14 5.2396 6.2711 -0.3808 14 1 6.3827 5.9136 0.4971 15 1 5.6463 7.3609 -1.3040 16 1 4.0993 6.7286 0.4531 17 6 2.1389 -1.1673 -0.0005 18 8 3.3510 -1.1694 0.0940 19 6 1.4049 -2.4437 -0.1160 20 6 0.2936 -2.6895 0.6934 21 6 -0.3848 -3.8870 0.5840 22 9 -1.4603 -4.1261 1.3658 23 6 0.0349 -4.8450 -0.3264 24 6 1.1342 -4.6094 -1.1299 25 6 1.8234 -3.4143 -1.0310 26 9 2.8977 -3.1849 -1.8175 27 1 -0.3633 0.0114 1.0275 28 1 -0.3633 0.8842 -0.5238 29 1 -0.3633 -0.8956 -0.5040 30 1 1.6458 2.0068 0.5821 31 1 3.1825 1.1195 0.4424 32 1 3.9701 0.2801 -1.7349 33 1 2.7180 0.2931 -3.0519 34 1 4.9373 2.1680 -2.9642 35 1 3.3436 2.5620 -3.7443 36 1 5.9400 5.1518 -2.8993 37 1 -0.0344 -1.9447 1.4033 38 1 -0.4993 -5.7801 -0.4074 39 1 1.4560 -5.3600 -1.8365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:44 Heat of formation + Delta-G solvation = -28.151580 kcal Electronic energy + Delta-G solvation = -25722.100280 eV Core-core repulsion = 21689.383383 eV Total energy + Delta-G solvation = -4032.716896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.31571 -49.10415 -40.35985 -38.58898 -37.52166 -35.35892 -32.31470 -31.90259 -30.39625 -28.49311 -27.77745 -26.70162 -24.42668 -23.31363 -23.17241 -22.18073 -19.93084 -18.95402 -17.90128 -17.85459 -17.53748 -16.73969 -16.58470 -16.09025 -15.86022 -15.60376 -15.38612 -14.74526 -14.63091 -14.57708 -14.00456 -13.81937 -13.64179 -13.40839 -13.02951 -12.80765 -12.68598 -12.33695 -12.21132 -11.94735 -11.68813 -11.35469 -11.00891 -10.86853 -10.67831 -10.39430 -9.99166 -9.81121 -9.66007 -9.62615 -9.43097 -8.96623 -8.75033 -8.40336 -6.80972 -5.71456 -3.03369 0.31203 0.54680 2.50875 2.85439 3.13896 3.42608 3.46724 3.48896 3.72811 3.78323 4.06518 4.28101 4.45273 4.51729 4.64960 4.99371 5.12515 5.22578 5.30338 5.38715 5.46619 5.49042 5.51660 5.59434 5.61282 5.61934 5.89523 5.95912 6.11963 6.28266 6.40151 6.53623 6.67077 6.78669 6.83352 7.32134 7.39066 7.56113 7.65552 8.03520 8.17069 9.09417 9.76443 10.67609 11.46348 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003360 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.881893 B = 8331.858407 C = 8927.268248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.160 4.160 7 C 0.166 3.834 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.556 3.444 18 O -0.508 6.508 19 C -0.129 4.129 20 C -0.099 4.099 21 C 0.082 3.918 22 F -0.133 7.133 23 C -0.107 4.107 24 C -0.131 4.131 25 C 0.142 3.858 26 F -0.114 7.114 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.253 0.747 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 -19.518 4.126 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.332 5.332 3 C -0.008 4.008 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.198 4.198 7 C 0.041 3.959 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.342 3.658 18 O -0.383 6.383 19 C -0.133 4.133 20 C -0.118 4.118 21 C 0.063 3.937 22 F -0.111 7.111 23 C -0.126 4.126 24 C -0.149 4.149 25 C 0.121 3.879 26 F -0.092 7.092 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.876 -19.162 4.232 24.034 hybrid contribution 0.026 0.997 0.407 1.077 sum -13.851 -18.165 4.639 23.309 Atomic orbital electron populations 1.22027 0.79912 1.03693 1.01613 1.47703 1.06824 1.06210 1.72468 1.21915 0.97837 0.81870 0.99182 1.22507 0.93209 0.89579 0.92743 0.94117 1.23816 0.99455 0.97573 0.98936 1.22125 0.99272 0.86026 0.88487 1.45997 1.34250 1.28320 1.24025 1.18975 1.18457 0.99049 0.98672 0.90383 1.24802 0.99921 0.98799 0.96800 1.69839 1.30515 1.38315 1.17902 0.86164 0.78464 0.82543 0.78839 1.21538 1.21705 1.20727 1.17873 0.87101 0.82971 0.77868 1.90871 1.12924 1.86558 1.47964 1.19955 0.97724 0.96405 0.99203 1.21278 0.93835 0.96888 0.99787 1.17458 0.87332 0.95117 0.93815 1.91541 1.52344 1.94600 1.72649 1.21133 0.96962 0.99640 0.94902 1.20995 0.95967 0.96405 1.01568 1.17655 0.85710 0.93654 0.90872 1.91625 1.51732 1.94593 1.71272 0.92417 0.90347 0.91034 0.90989 0.88604 0.89784 0.93893 0.91661 0.95542 0.93684 0.82963 0.83296 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 9.08 59.85 0.54 1.24 16 2 N -0.60 -8.71 2.81 -182.75 -0.51 -9.23 16 3 C 0.11 2.07 5.42 -4.04 -0.02 2.05 16 4 C 0.13 2.66 4.57 -66.86 -0.31 2.36 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.16 -3.38 7.28 -25.79 -0.19 -3.57 16 7 C 0.17 4.17 7.38 -2.85 -0.02 4.15 16 8 N -0.60 -15.71 3.58 -169.74 -0.61 -16.32 16 9 C -0.22 -6.33 10.51 -15.06 -0.16 -6.49 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -28.00 11.57 55.49 0.64 -27.36 16 13 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 C 0.56 8.79 6.56 -12.39 -0.08 8.70 16 18 O -0.51 -10.21 14.81 5.30 0.08 -10.13 16 19 C -0.13 -1.56 4.93 -104.92 -0.52 -2.08 16 20 C -0.10 -0.91 7.61 -39.11 -0.30 -1.20 16 21 C 0.08 0.67 7.29 -39.49 -0.29 0.38 16 22 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 23 C -0.11 -0.72 10.01 -39.45 -0.39 -1.12 16 24 C -0.13 -1.02 10.01 -39.58 -0.40 -1.42 16 25 C 0.14 1.65 7.25 -38.97 -0.28 1.37 16 26 F -0.11 -1.65 16.49 2.25 0.04 -1.61 16 27 H 0.06 0.45 7.41 -51.93 -0.39 0.06 16 28 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.07 0.61 5.78 -51.93 -0.30 0.31 16 30 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.10 2.03 7.23 -51.93 -0.38 1.65 16 32 H 0.08 1.92 6.82 -51.93 -0.35 1.56 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.80 7.47 -51.93 -0.39 1.41 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.15 1.18 6.39 -52.49 -0.34 0.84 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -34.20 334.77 -7.45 -41.65 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.64 Total: -2.51 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.50 Total: 4.09 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.48 Total: -52.90 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.70 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.20 -7.45 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.495 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds