Wall clock time and date at job start Tue Mar 31 2020 10:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00094 * 2 1 4 4 C 1.53003 * 109.47403 * 274.50351 * 3 2 1 5 5 H 1.08998 * 112.96079 * 64.96336 * 4 3 2 6 6 C 1.53944 * 113.76909 * 293.28324 * 4 3 2 7 7 C 1.53947 * 86.29078 * 222.09083 * 6 4 3 8 8 N 1.47579 * 113.76854 * 196.64165 * 4 3 2 9 9 C 1.36936 * 134.49064 * 318.92722 * 8 4 3 10 10 H 1.07990 * 120.00348 * 6.18403 * 9 8 4 11 11 C 1.38816 * 119.99617 * 186.18238 * 9 8 4 12 12 N 1.31620 * 120.00382 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47380 * 89.99572 * 13 11 9 15 15 H 1.48497 * 109.47354 * 210.00090 * 13 11 9 16 16 H 1.48501 * 109.46840 * 330.00037 * 13 11 9 17 17 C 1.34783 * 119.99936 * 180.02562 * 2 1 3 18 18 O 1.21573 * 119.99957 * 185.15296 * 17 2 1 19 19 C 1.47697 * 119.99759 * 5.15184 * 17 2 1 20 20 C 1.39657 * 120.15398 * 311.55728 * 19 17 2 21 21 C 1.38066 * 119.84956 * 180.25576 * 20 19 17 22 22 F 1.35101 * 119.91835 * 180.02562 * 21 20 19 23 23 C 1.38657 * 120.16634 * 0.02562 * 21 20 19 24 24 C 1.38184 * 120.31677 * 0.02562 * 23 21 20 25 25 C 1.38309 * 120.14463 * 359.97438 * 24 23 21 26 26 F 1.35102 * 120.08786 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.46921 * 270.63756 * 1 2 3 28 28 H 1.09000 * 109.46834 * 30.64359 * 1 2 3 29 29 H 1.09001 * 109.46913 * 150.63331 * 1 2 3 30 30 H 1.09003 * 109.47346 * 34.50389 * 3 2 1 31 31 H 1.09000 * 109.46913 * 154.50336 * 3 2 1 32 32 H 1.09000 * 113.74185 * 336.43880 * 6 4 3 33 33 H 1.08998 * 113.74324 * 107.63600 * 6 4 3 34 34 H 1.08999 * 113.76578 * 137.90971 * 7 6 4 35 35 H 1.09001 * 113.76496 * 269.19551 * 7 6 4 36 36 H 0.96997 * 120.00498 * 180.02562 * 12 11 9 37 37 H 1.07993 * 120.07656 * 0.25348 * 20 19 17 38 38 H 1.08002 * 119.84493 * 179.97438 * 23 21 20 39 39 H 1.07999 * 119.92849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3545 1.7671 -1.4381 5 1 1.4032 2.0176 -1.9075 6 6 3.2603 0.8767 -2.3079 7 6 3.8528 2.1875 -2.8563 8 7 3.3888 2.8076 -1.5974 9 6 3.7661 3.9050 -0.8703 10 1 3.3181 4.0940 0.0939 11 6 4.7244 4.7745 -1.3729 12 7 5.2701 4.5445 -2.5483 13 14 5.2396 6.2711 -0.3808 14 1 6.3827 5.9136 0.4971 15 1 5.6463 7.3609 -1.3040 16 1 4.0993 6.7286 0.4531 17 6 2.1389 -1.1673 -0.0005 18 8 3.3510 -1.1694 0.0940 19 6 1.4049 -2.4437 -0.1160 20 6 0.2936 -2.6895 0.6934 21 6 -0.3848 -3.8870 0.5840 22 9 -1.4603 -4.1261 1.3658 23 6 0.0349 -4.8450 -0.3264 24 6 1.1342 -4.6094 -1.1299 25 6 1.8234 -3.4143 -1.0310 26 9 2.8977 -3.1849 -1.8175 27 1 -0.3633 0.0114 1.0275 28 1 -0.3633 0.8842 -0.5238 29 1 -0.3633 -0.8956 -0.5040 30 1 1.6458 2.0068 0.5821 31 1 3.1825 1.1195 0.4424 32 1 3.9701 0.2801 -1.7349 33 1 2.7180 0.2931 -3.0519 34 1 4.9373 2.1680 -2.9642 35 1 3.3436 2.5620 -3.7443 36 1 5.9400 5.1518 -2.8993 37 1 -0.0344 -1.9447 1.4033 38 1 -0.4993 -5.7801 -0.4074 39 1 1.4560 -5.3600 -1.8365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:44 Heat of formation + Delta-G solvation = -49.552520 kcal Electronic energy + Delta-G solvation = -25723.028294 eV Core-core repulsion = 21689.383383 eV Total energy + Delta-G solvation = -4033.644911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.04258 -49.95561 -41.48323 -39.80629 -38.97050 -36.62379 -34.26713 -32.90757 -31.12171 -29.89889 -29.81050 -27.70110 -25.53982 -25.22405 -24.17145 -23.46555 -21.13828 -20.72707 -18.91196 -18.68295 -18.54305 -18.34618 -17.65857 -17.15133 -16.99078 -16.76996 -16.39919 -16.36409 -15.84024 -15.47757 -15.39724 -15.21972 -14.91856 -14.25868 -14.18238 -14.03995 -13.83211 -13.63097 -13.38014 -13.32194 -12.94861 -12.80754 -12.63274 -12.54401 -12.44185 -12.27015 -11.85016 -11.62868 -11.30274 -11.08989 -10.86909 -10.32593 -9.79046 -9.65775 -8.90666 -7.90191 -5.23574 -0.43406 -0.12846 1.43127 1.45693 1.47497 1.55311 1.81450 2.28699 2.48440 2.98938 3.03305 3.24848 3.33140 3.41830 3.59340 3.83314 3.87546 3.99230 4.14554 4.23172 4.28723 4.42641 4.46384 4.60546 4.72223 4.74919 4.81043 4.84333 4.86813 4.89837 4.95531 4.98105 5.05454 5.19181 5.40832 5.51176 5.62248 5.68838 5.91859 6.26618 6.90341 6.99491 7.61081 8.57649 9.28306 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003360 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.881893 B = 8331.858407 C = 8927.268248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C 0.129 3.871 4 C 0.136 3.864 5 H 0.063 0.937 6 C -0.135 4.135 7 C 0.162 3.838 8 N -0.628 5.628 9 C -0.229 4.229 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.263 1.263 17 C 0.552 3.448 18 O -0.566 6.566 19 C -0.147 4.147 20 C -0.092 4.092 21 C 0.086 3.914 22 F -0.131 7.131 23 C -0.086 4.086 24 C -0.117 4.117 25 C 0.113 3.887 26 F -0.140 7.140 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 -21.243 5.313 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C 0.004 3.996 4 C 0.029 3.971 5 H 0.080 0.920 6 C -0.173 4.173 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.358 4.358 10 H 0.107 0.893 11 C -0.264 4.264 12 N -0.607 5.607 13 Si 0.807 3.193 14 H -0.217 1.217 15 H -0.222 1.222 16 H -0.187 1.187 17 C 0.340 3.660 18 O -0.445 6.445 19 C -0.151 4.151 20 C -0.111 4.111 21 C 0.067 3.933 22 F -0.109 7.109 23 C -0.105 4.105 24 C -0.135 4.135 25 C 0.092 3.908 26 F -0.119 7.119 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.184 0.816 38 H 0.204 0.796 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.335 -20.915 5.444 27.705 hybrid contribution 0.963 1.388 0.056 1.691 sum -16.372 -19.527 5.500 26.069 Atomic orbital electron populations 1.22367 0.76604 1.04959 1.03856 1.47726 1.08672 1.04590 1.71772 1.21458 0.97070 0.83994 0.97034 1.22651 0.92692 0.87185 0.94537 0.91958 1.23511 0.98956 0.95924 0.98955 1.22039 0.97229 0.88457 0.88646 1.46316 1.36190 1.28744 1.24184 1.19436 1.17941 0.99147 0.99226 0.89276 1.25701 1.00548 1.02082 0.98114 1.70040 1.31418 1.39373 1.19837 0.85066 0.78297 0.78619 0.77288 1.21656 1.22188 1.18700 1.18489 0.86680 0.84367 0.76492 1.90837 1.15574 1.87522 1.50537 1.19653 0.99153 0.94953 1.01385 1.21308 0.92766 0.97875 0.99169 1.17509 0.87053 0.94915 0.93833 1.91559 1.52196 1.94511 1.72658 1.21539 0.95786 1.00342 0.92802 1.21275 0.95347 0.95185 1.01723 1.18128 0.85953 0.95251 0.91436 1.91557 1.53270 1.94934 1.72125 0.89645 0.89636 0.89266 0.89150 0.92352 0.91816 0.91209 0.95326 0.95894 0.94402 0.81627 0.79585 0.80218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 9.08 127.77 1.16 2.22 16 2 N -0.60 -16.71 2.81 -850.35 -2.39 -19.10 16 3 C 0.13 4.62 5.42 86.38 0.47 5.08 16 4 C 0.14 5.64 4.57 45.09 0.21 5.84 16 5 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 6 C -0.14 -5.86 7.28 31.25 0.23 -5.63 16 7 C 0.16 8.46 7.38 86.44 0.64 9.10 16 8 N -0.63 -33.60 3.58 -690.93 -2.47 -36.08 16 9 C -0.23 -13.15 10.51 84.03 0.88 -12.27 16 10 H 0.09 4.77 7.83 -2.92 -0.02 4.75 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 12 N -0.96 -60.57 11.57 21.65 0.25 -60.32 16 13 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 C 0.55 17.51 6.56 86.74 0.57 18.08 16 18 O -0.57 -23.90 14.81 -3.95 -0.06 -23.96 16 19 C -0.15 -3.40 4.93 -20.06 -0.10 -3.50 16 20 C -0.09 -1.44 7.61 22.57 0.17 -1.26 16 21 C 0.09 1.07 7.29 22.33 0.16 1.23 16 22 F -0.13 -1.67 17.26 44.97 0.78 -0.90 16 23 C -0.09 -0.77 10.01 22.36 0.22 -0.54 16 24 C -0.12 -1.46 10.01 22.27 0.22 -1.24 16 25 C 0.11 2.51 7.25 22.67 0.16 2.67 16 26 F -0.14 -4.15 16.49 44.97 0.74 -3.41 16 27 H 0.09 1.00 7.41 -2.39 -0.02 0.98 16 28 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 29 H 0.09 1.22 5.78 -2.39 -0.01 1.20 16 30 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 31 H 0.06 2.56 7.23 -2.39 -0.02 2.54 16 32 H 0.06 3.06 6.82 -2.39 -0.02 3.04 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.03 1.67 7.47 -2.39 -0.02 1.66 16 35 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.17 2.03 6.39 -2.91 -0.02 2.01 16 38 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -79.26 334.77 5.42 -73.84 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.08 Total: 4.81 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.47 Total: 16.01 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.62 Total: -115.50 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.52 Total: -4.31 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.26 5.42 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.292 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds