Wall clock time and date at job start Tue Mar 31 2020 09:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.99279 * 2 1 4 4 C 1.54329 * 109.98995 * 238.96133 * 2 1 3 5 5 H 1.09007 * 110.51911 * 336.97604 * 4 2 1 6 6 N 1.46503 * 111.00125 * 100.12733 * 4 2 1 7 7 C 1.34777 * 119.99624 * 200.23381 * 6 4 2 8 8 O 1.21556 * 120.00414 * 359.97438 * 7 6 4 9 9 C 1.47866 * 119.99874 * 180.02562 * 7 6 4 10 10 C 1.39544 * 120.11788 * 359.71835 * 9 7 6 11 11 C 1.38200 * 119.87672 * 179.79141 * 10 9 7 12 12 F 1.35106 * 119.94208 * 180.23497 * 11 10 9 13 13 C 1.38529 * 120.11876 * 0.46663 * 11 10 9 14 14 C 1.38525 * 120.24488 * 359.79007 * 13 11 10 15 15 F 1.35101 * 119.93888 * 179.97438 * 14 13 11 16 16 C 1.38200 * 120.12314 * 359.97407 * 14 13 11 17 17 C 1.55159 * 103.02107 * 218.66587 * 4 2 1 18 18 C 1.54910 * 101.58155 * 35.30683 * 17 4 2 19 19 N 1.47019 * 109.87998 * 121.09578 * 2 1 3 20 20 C 1.36945 * 125.64869 * 298.39071 * 19 2 1 21 21 H 1.08000 * 119.99441 * 359.72211 * 20 19 2 22 22 C 1.38811 * 120.00031 * 179.72068 * 20 19 2 23 23 N 1.31619 * 120.00283 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99811 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46722 * 90.00437 * 24 22 20 26 26 H 1.48497 * 109.47157 * 210.00127 * 24 22 20 27 27 H 1.48494 * 109.47346 * 330.00290 * 24 22 20 28 28 H 1.09002 * 109.47328 * 300.35899 * 1 2 3 29 29 H 1.08998 * 109.47470 * 60.36146 * 1 2 3 30 30 H 1.09002 * 109.47159 * 180.35856 * 1 2 3 31 31 H 0.96988 * 120.00141 * 20.23321 * 6 4 2 32 32 H 1.08007 * 120.06312 * 0.02973 * 10 9 7 33 33 H 1.08007 * 119.87899 * 179.76553 * 13 11 10 34 34 H 1.08005 * 120.06371 * 179.97438 * 16 14 13 35 35 H 1.09007 * 111.00087 * 277.23372 * 17 4 2 36 36 H 1.08998 * 111.00759 * 153.38268 * 17 4 2 37 37 H 1.09002 * 110.36832 * 204.15743 * 18 17 4 38 38 H 1.08998 * 110.46009 * 81.87490 * 18 17 4 39 39 H 0.96998 * 120.00243 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4407 -1.6196 6 7 2.4631 0.1938 -2.2892 7 6 2.5608 -0.2210 -3.5678 8 8 2.3130 -1.3765 -3.8526 9 6 2.9706 0.7291 -4.6241 10 6 3.2511 2.0573 -4.3007 11 6 3.6379 2.9401 -5.2912 12 9 3.9143 4.2251 -4.9788 13 6 3.7380 2.5109 -6.6045 14 6 3.4556 1.1949 -6.9319 15 9 3.5547 0.7831 -8.2148 16 6 3.0726 0.3024 -5.9487 17 6 3.2863 -1.5184 -0.6914 18 6 2.8099 -1.8825 0.7369 19 7 2.0300 -0.7141 1.1839 20 6 1.8038 -0.3563 2.4863 21 1 1.2161 0.5215 2.7108 22 6 2.3297 -1.1220 3.5178 23 7 3.0463 -2.1916 3.2441 24 14 2.0218 -0.6336 5.2943 25 1 0.7780 -1.2850 5.7781 26 1 3.1671 -1.0692 6.1331 27 1 1.8753 0.8414 5.3839 28 1 -0.3634 0.5194 0.8868 29 1 -0.3634 0.5082 -0.8932 30 1 -0.3633 -1.0277 0.0064 31 1 2.6612 1.1156 -2.0619 32 1 3.1698 2.3938 -3.2776 33 1 4.0369 3.2050 -7.3761 34 1 2.8523 -0.7234 -6.2052 35 1 4.1670 -0.8768 -0.6579 36 1 3.4807 -2.4156 -1.2791 37 1 3.6655 -2.0411 1.3933 38 1 2.1806 -2.7721 0.7134 39 1 3.4141 -2.7265 3.9648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089024321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:13 Heat of formation + Delta-G solvation = -70.544160 kcal Electronic energy + Delta-G solvation = -25061.012797 eV Core-core repulsion = 21026.457620 eV Total energy + Delta-G solvation = -4034.555177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.41022 -49.39007 -40.39207 -38.59287 -37.43780 -34.27505 -32.37848 -31.42318 -30.73662 -30.40252 -28.63797 -25.55558 -24.11095 -23.92169 -23.13259 -21.00579 -20.26640 -19.94230 -18.59112 -17.63051 -16.93482 -16.79407 -16.48964 -16.41154 -16.12440 -15.70234 -15.69697 -14.85472 -14.80695 -14.69846 -14.13725 -13.96166 -13.46105 -13.13359 -12.87456 -12.45565 -12.36487 -12.24723 -12.17015 -11.99416 -11.62405 -11.19278 -10.90837 -10.88649 -10.61191 -10.52074 -10.13254 -10.00252 -9.81227 -9.61784 -9.57483 -9.23907 -8.79924 -8.68532 -6.92791 -5.69901 -3.13160 0.15569 0.50466 2.40694 2.94694 3.31332 3.36967 3.41611 3.43817 3.44709 3.86950 4.15816 4.30061 4.44058 4.56346 4.58429 5.02120 5.21480 5.29137 5.36753 5.41573 5.47070 5.52361 5.56663 5.64531 5.74440 6.05104 6.15417 6.21629 6.24456 6.27225 6.45208 6.52406 6.65320 6.79499 7.01493 7.44776 7.52367 7.57809 7.80597 8.13550 8.30548 9.15893 9.76756 10.39927 11.33438 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.002928 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.733144 B = 9560.229412 C =10106.787978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.095 0.905 6 N -0.705 5.705 7 C 0.556 3.444 8 O -0.527 6.527 9 C -0.067 4.067 10 C -0.133 4.133 11 C 0.127 3.873 12 F -0.127 7.127 13 C -0.173 4.173 14 C 0.125 3.875 15 F -0.127 7.127 16 C -0.107 4.107 17 C -0.153 4.153 18 C 0.152 3.848 19 N -0.595 5.595 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.398 0.602 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.015 0.985 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 9.333 -18.598 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.113 0.887 6 N -0.355 5.355 7 C 0.342 3.658 8 O -0.405 6.405 9 C -0.071 4.071 10 C -0.153 4.153 11 C 0.108 3.892 12 F -0.105 7.105 13 C -0.192 4.192 14 C 0.106 3.894 15 F -0.105 7.105 16 C -0.127 4.127 17 C -0.192 4.192 18 C 0.027 3.973 19 N -0.320 5.320 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.234 0.766 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.175 0.825 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.081 8.451 -18.567 20.428 hybrid contribution -0.054 0.904 0.813 1.217 sum 1.027 9.356 -17.754 20.094 Atomic orbital electron populations 1.22253 0.97748 1.01511 1.00059 1.20977 0.92659 0.94789 0.86832 0.94643 1.22248 0.97880 0.90728 0.86184 0.88722 1.46006 1.68193 1.14464 1.06831 1.17909 0.78286 0.87253 0.82392 1.90809 1.49441 1.18102 1.82101 1.19691 1.00377 0.93083 0.93942 1.21423 1.00931 0.92560 1.00355 1.17063 1.00218 0.79439 0.92510 1.91573 1.91052 1.34422 1.93441 1.21207 1.05169 0.96138 0.96729 1.17091 1.00944 0.92111 0.79265 1.91564 1.93583 1.90598 1.34773 1.21322 0.99045 1.01441 0.90878 1.23409 0.96618 0.99386 0.99814 1.21963 0.97467 0.88354 0.89486 1.44495 1.59418 1.28060 1.00033 1.19018 1.27521 1.08048 0.80442 0.90423 1.24790 1.00299 0.97315 0.98089 1.69787 1.39179 1.17633 1.30244 0.86079 0.77277 0.77736 0.84417 1.21618 1.21655 1.20695 0.92572 0.94297 0.92847 0.76626 0.83312 0.82957 0.82457 0.91889 0.91773 0.87246 0.96663 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.14 37.16 0.34 -2.42 16 2 C 0.16 2.97 3.49 -66.95 -0.23 2.73 16 3 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 4 C 0.13 2.30 2.76 -66.09 -0.18 2.11 16 5 H 0.09 1.74 7.39 -51.92 -0.38 1.35 16 6 N -0.70 -9.57 5.16 -52.96 -0.27 -9.84 16 7 C 0.56 7.71 7.77 -12.32 -0.10 7.61 16 8 O -0.53 -9.12 16.07 5.32 0.09 -9.04 16 9 C -0.07 -0.72 5.87 -104.98 -0.62 -1.34 16 10 C -0.13 -1.18 9.52 -39.11 -0.37 -1.55 16 11 C 0.13 1.09 7.29 -39.49 -0.29 0.80 16 12 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 13 C -0.17 -1.36 10.00 -39.37 -0.39 -1.76 16 14 C 0.13 1.13 7.29 -39.49 -0.29 0.84 16 15 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 16 C -0.11 -1.08 9.57 -39.11 -0.37 -1.46 16 17 C -0.15 -2.91 6.77 -24.58 -0.17 -3.07 16 18 C 0.15 3.60 5.89 -2.53 -0.01 3.58 16 19 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16 20 C -0.22 -5.88 9.87 -15.06 -0.15 -6.03 16 21 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.12 10.09 55.49 0.56 -25.56 16 24 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H 0.06 1.03 8.02 -51.93 -0.42 0.61 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.40 4.37 6.36 -40.82 -0.26 4.11 16 32 H 0.15 1.08 6.40 -52.48 -0.34 0.74 16 33 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.16 1.61 7.65 -52.48 -0.40 1.21 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -29.94 334.87 -7.55 -37.49 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.58 Total: 2.83 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.93 Total: -0.30 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.22 Total: -50.24 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.94 -7.55 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089024321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.054 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds