Wall clock time and date at job start Tue Mar 31 2020 10:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.46781 * 2 1 4 4 C 1.34657 * 116.99846 * 180.02562 * 3 2 1 5 5 O 1.21413 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.48239 * 120.00044 * 179.97438 * 4 3 2 7 7 C 1.42301 * 126.94309 * 180.23419 * 6 4 3 8 8 C 1.35307 * 103.92113 * 180.12425 * 7 6 4 9 9 C 1.50699 * 126.66251 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.46785 * 89.71081 * 9 8 7 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 8 12 12 C 1.53931 * 113.73439 * 246.72590 * 11 10 9 13 13 N 1.47954 * 86.18314 * 221.92154 * 12 11 10 14 14 C 1.46903 * 110.99860 * 137.58441 * 13 12 11 15 15 C 1.50697 * 109.47327 * 70.64337 * 14 13 12 16 16 H 1.08003 * 119.99686 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00205 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00081 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47098 * 90.00271 * 19 17 15 21 21 H 1.48502 * 109.47068 * 210.00022 * 19 17 15 22 22 H 1.48503 * 109.46932 * 330.00101 * 19 17 15 23 23 C 1.47958 * 90.76257 * 24.69268 * 13 12 11 24 24 O 1.34018 * 106.67534 * 359.66961 * 8 7 6 25 25 N 1.20910 * 111.85363 * 0.22680 * 24 8 7 26 26 H 1.09003 * 109.47123 * 299.99968 * 1 2 3 27 27 H 1.08997 * 109.47327 * 60.00004 * 1 2 3 28 28 H 1.08999 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46897 * 240.00416 * 2 1 3 30 30 H 1.08997 * 109.47327 * 119.99996 * 2 1 3 31 31 H 1.07997 * 128.03947 * 0.05304 * 7 6 4 32 32 H 1.08997 * 109.47198 * 329.71182 * 9 8 7 33 33 H 1.08997 * 109.47040 * 209.71216 * 9 8 7 34 34 H 1.08993 * 112.93943 * 18.43571 * 11 10 9 35 35 H 1.09005 * 113.76262 * 336.24345 * 12 11 10 36 36 H 1.09006 * 113.75723 * 107.60348 * 12 11 10 37 37 H 1.09007 * 109.46892 * 190.64485 * 14 13 12 38 38 H 1.09005 * 109.46984 * 310.63939 * 14 13 12 39 39 H 0.97000 * 119.99885 * 180.02562 * 18 17 15 40 40 H 1.09005 * 113.76092 * 220.99282 * 23 13 12 41 41 H 1.08996 * 113.86318 * 89.63922 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5455 -0.0005 5 8 4.0885 0.5826 -0.0015 6 6 3.9155 2.9153 -0.0011 7 6 5.2933 3.2710 -0.0064 8 6 5.2803 4.6240 -0.0018 9 6 6.4804 5.5354 -0.0038 10 8 6.8581 5.8226 -1.3517 11 6 7.9921 6.6846 -1.4665 12 6 7.6648 8.0618 -2.0712 13 7 8.9185 7.9111 -2.8423 14 6 8.7367 8.3471 -4.2332 15 6 8.5853 9.8459 -4.2741 16 1 8.6203 10.4174 -3.3583 17 6 8.4022 10.4877 -5.4806 18 7 8.3592 9.7918 -6.5957 19 14 8.2139 12.3455 -5.5312 20 1 9.5505 12.9746 -5.6823 21 1 7.3553 12.7248 -6.6819 22 1 7.5861 12.8139 -4.2695 23 6 8.8320 6.4381 -2.7328 24 8 3.9928 4.9962 -0.0019 25 7 3.2488 4.0431 -0.0015 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 6.1502 2.6137 -0.0116 32 1 7.3086 5.0468 0.5093 33 1 6.2321 6.4642 0.5097 34 1 8.5822 6.7343 -0.5515 35 1 6.7670 8.0680 -2.6893 36 1 7.6897 8.8764 -1.3472 37 1 9.6054 8.0534 -4.8226 38 1 7.8426 7.8802 -4.6464 39 1 8.2307 10.2433 -7.4445 40 1 9.7896 5.9552 -2.5375 41 1 8.2762 5.9675 -3.5437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224259846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:14 Heat of formation + Delta-G solvation = -24.134721 kcal Electronic energy + Delta-G solvation = -24311.203908 eV Core-core repulsion = 20389.748712 eV Total energy + Delta-G solvation = -3921.455197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.49642 -40.75767 -39.50510 -37.15859 -36.92319 -34.50943 -33.11425 -32.66700 -32.04775 -29.18836 -27.06704 -26.12051 -25.66399 -24.79832 -23.49591 -22.98044 -21.62189 -20.99670 -19.47220 -18.30326 -18.03701 -17.87231 -17.03145 -16.83158 -16.70995 -16.28371 -15.64183 -15.24005 -14.60052 -14.58712 -14.38137 -14.06631 -13.91797 -13.57240 -13.28587 -13.07696 -12.49139 -12.24239 -12.13358 -12.10384 -12.02038 -11.77018 -11.45937 -11.30127 -11.21497 -11.03656 -10.94705 -10.90921 -10.63388 -10.31001 -10.03935 -9.68316 -9.38546 -9.18207 -8.50506 -7.86735 -6.06083 -4.08322 0.54364 1.10413 1.88784 2.42979 2.51395 3.30975 3.36791 3.40256 3.49463 3.71342 4.16622 4.40911 4.45398 4.47348 4.49217 4.62733 4.71657 4.78452 4.81811 4.88485 5.01211 5.20806 5.22302 5.24958 5.30331 5.30718 5.43778 5.50010 5.77814 5.84467 6.06513 6.12055 6.33968 6.41698 6.63573 7.10871 7.16438 7.23540 7.60325 7.61521 7.85021 8.07604 8.38376 8.98610 9.56214 11.05146 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002110 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.596620 B =13268.278081 C =13687.213270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.342 6.342 4 C 0.557 3.443 5 O -0.487 6.487 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.019 4.019 9 C 0.140 3.860 10 O -0.371 6.371 11 C 0.052 3.948 12 C 0.006 3.994 13 N -0.476 5.476 14 C 0.163 3.837 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.001 3.999 24 O 0.146 5.854 25 N -0.301 5.301 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.188 0.812 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.001 0.999 39 H 0.262 0.738 40 H 0.084 0.916 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 -17.622 17.095 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.258 6.258 4 C 0.398 3.602 5 O -0.372 6.372 6 C -0.178 4.178 7 C -0.180 4.180 8 C -0.082 4.082 9 C 0.062 3.938 10 O -0.289 6.289 11 C -0.006 4.006 12 C -0.123 4.123 13 N -0.200 5.200 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.128 4.128 24 O 0.062 5.938 25 N 0.003 4.997 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.205 0.795 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.300 -17.484 16.917 26.825 hybrid contribution 0.009 0.156 -0.506 0.529 sum -11.291 -17.328 16.412 26.402 Atomic orbital electron populations 1.21825 0.92076 1.03228 1.03915 1.23187 0.95794 0.79115 1.03059 1.86615 1.22553 1.33158 1.83482 1.19418 0.81117 0.86670 0.72986 1.90877 1.60639 1.40602 1.45093 1.22253 0.92226 0.91946 1.11414 1.22438 0.96249 0.94377 1.04895 1.24201 0.86287 0.94369 1.03325 1.20736 0.89366 0.96715 0.86980 1.88082 1.49224 1.68480 1.23154 1.24579 0.86362 0.90628 0.98995 1.24215 0.94990 0.95164 0.97907 1.68561 1.29836 1.05440 1.16213 1.20209 0.96333 0.96559 0.83214 1.21078 1.49315 0.91465 0.93156 0.91955 1.25002 0.95334 0.98705 0.95553 1.69959 1.50086 1.35632 0.97936 0.86470 0.78047 0.85149 0.77585 1.20584 1.21261 1.19822 1.24187 0.98627 0.94064 0.95906 1.84868 1.14463 1.29885 1.64535 1.74368 1.17487 0.94851 1.12963 0.91278 0.91185 0.89832 0.90677 0.90749 0.79483 0.89172 0.90058 0.88702 0.90532 0.90096 0.94855 0.98095 0.92837 0.89809 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.42 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.34 -3.77 10.23 -40.38 -0.41 -4.18 16 4 C 0.56 6.76 7.99 34.84 0.28 7.04 16 5 O -0.49 -6.47 16.74 -19.20 -0.32 -6.79 16 6 C -0.02 -0.27 7.24 -82.55 -0.60 -0.87 16 7 C -0.16 -1.63 10.92 -39.07 -0.43 -2.06 16 8 C -0.02 -0.20 7.10 -35.35 -0.25 -0.45 16 9 C 0.14 1.28 6.33 36.01 0.23 1.51 16 10 O -0.37 -5.01 10.35 -35.23 -0.36 -5.38 16 11 C 0.05 0.74 4.50 -25.80 -0.12 0.62 16 12 C 0.01 0.12 7.29 -2.77 -0.02 0.10 16 13 N -0.48 -10.04 6.25 -239.98 -1.50 -11.54 16 14 C 0.16 4.24 4.58 -4.98 -0.02 4.22 16 15 C -0.51 -14.38 8.84 -34.44 -0.30 -14.69 16 16 H 0.06 1.73 7.80 -52.48 -0.41 1.32 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.00 0.02 7.80 -2.77 -0.02 0.00 16 24 O 0.15 1.75 11.18 17.24 0.19 1.94 16 25 N -0.30 -3.88 12.12 33.29 0.40 -3.48 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.08 7.87 -51.93 -0.41 0.67 16 35 H 0.08 1.54 7.78 -51.93 -0.40 1.14 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.00 0.03 7.69 -51.93 -0.40 -0.37 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.31 7.80 -51.93 -0.40 0.90 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -33.09 362.27 -7.38 -40.47 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.81 Total: -4.29 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.74 Total: -2.82 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.36 Total: -41.01 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.91 Total: -14.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.09 -7.38 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224259846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds