Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48501 * 109.47342 * 269.99876 * 3 2 1 5 5 H 1.48499 * 109.47454 * 29.99702 * 3 2 1 6 6 H 1.48505 * 109.47224 * 149.99958 * 3 2 1 7 7 C 1.37879 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99865 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00442 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47568 * 180.02562 * 9 7 2 11 11 C 1.38318 * 119.87902 * 89.99758 * 10 9 7 12 12 C 1.38017 * 120.12485 * 180.02562 * 11 10 9 13 13 C 1.39349 * 119.87235 * 359.97438 * 12 11 10 14 14 C 1.48366 * 120.12120 * 180.02562 * 13 12 11 15 15 C 1.39364 * 120.01820 * 359.97438 * 14 13 12 16 16 C 1.38088 * 120.08947 * 179.97438 * 15 14 13 17 17 C 1.38594 * 119.87666 * 0.27211 * 16 15 14 18 18 C 1.38876 * 120.26774 * 359.50356 * 17 16 15 19 19 C 1.38248 * 120.18179 * 0.47695 * 18 17 16 20 20 O 1.36485 * 119.60791 * 180.18055 * 18 17 16 21 21 C 1.42903 * 115.93604 * 68.58855 * 20 18 17 22 22 C 1.52065 * 110.76853 * 275.58356 * 21 20 18 23 23 C 1.52064 * 112.36842 * 64.78805 * 22 21 20 24 24 O 1.36475 * 120.18057 * 180.25526 * 17 16 15 25 25 C 1.39359 * 119.75955 * 0.27748 * 13 12 11 26 26 C 1.38013 * 119.87119 * 359.46508 * 25 13 12 27 27 H 0.96997 * 119.99725 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47213 * 59.99795 * 9 7 2 29 29 H 1.09000 * 109.47058 * 300.00177 * 9 7 2 30 30 H 1.07997 * 119.93721 * 359.97438 * 11 10 9 31 31 H 1.07996 * 120.06047 * 179.97438 * 12 11 10 32 32 H 1.07994 * 119.95425 * 359.94353 * 15 14 13 33 33 H 1.08002 * 120.05773 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.18938 * 179.79081 * 19 18 17 35 35 H 1.09002 * 109.21121 * 35.91305 * 21 20 18 36 36 H 1.08998 * 109.21863 * 155.24818 * 21 20 18 37 37 H 1.08999 * 108.90156 * 185.53366 * 22 21 20 38 38 H 1.09000 * 108.90248 * 304.13896 * 22 21 20 39 39 H 1.09010 * 109.21414 * 55.50508 * 23 22 21 40 40 H 1.08995 * 109.21927 * 174.83099 * 23 22 21 41 41 H 1.07994 * 120.06528 * 179.72406 * 25 13 12 42 42 H 1.07997 * 119.93666 * 180.22895 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0139 -2.6150 0.0010 11 6 4.2440 -3.2644 -1.1984 12 6 4.7035 -4.5658 -1.2044 13 6 4.9362 -5.2253 0.0009 14 6 5.4308 -6.6241 0.0008 15 6 5.6631 -7.2814 -1.2059 16 6 6.1239 -8.5831 -1.2077 17 6 6.3497 -9.2371 -0.0068 18 6 6.1243 -8.5852 1.1985 19 6 5.6633 -7.2819 1.2082 20 8 6.3546 -9.2409 2.3732 21 6 7.7224 -9.5287 2.6705 22 6 8.1615 -10.8180 1.9942 23 6 8.1430 -10.7112 0.4775 24 8 6.8101 -10.5219 -0.0013 25 6 4.6976 -4.5679 1.2063 26 6 4.2432 -3.2648 1.2004 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 4.0629 -2.7524 -2.1319 31 1 4.8824 -5.0719 -2.1415 32 1 5.4820 -6.7722 -2.1409 33 1 6.3034 -9.0921 -2.1431 34 1 5.4848 -6.7760 2.1455 35 1 8.3466 -8.7078 2.3176 36 1 7.8413 -9.6308 3.7492 37 1 9.1735 -11.0600 2.3188 38 1 7.4917 -11.6222 2.2985 39 1 8.7581 -9.8655 0.1698 40 1 8.5517 -11.6259 0.0483 41 1 4.8720 -5.0758 2.1433 42 1 4.0615 -2.7531 2.1340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242207648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = -30.968876 kcal Electronic energy + Delta-G solvation = -24061.053750 eV Core-core repulsion = 20550.151465 eV Total energy + Delta-G solvation = -3510.902285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02993 -39.16941 -37.65436 -37.43180 -33.88644 -33.02516 -31.90784 -31.00022 -30.15171 -29.29780 -27.19602 -26.48424 -23.71053 -23.24857 -22.04567 -21.68774 -21.28246 -20.06412 -18.68973 -17.24275 -17.11752 -16.81237 -16.15644 -15.65678 -15.58076 -14.83571 -14.55670 -14.42848 -14.29440 -14.05911 -13.91317 -13.79718 -13.38271 -13.01091 -12.84128 -12.63378 -12.25320 -12.07466 -11.83450 -11.68170 -11.50315 -11.29048 -11.09734 -10.71149 -10.67564 -10.36042 -10.18501 -10.07492 -9.98533 -9.45611 -9.06842 -8.79994 -8.62202 -8.45365 -7.48560 -6.10847 -4.10675 0.67395 1.08541 1.92082 2.06796 3.22162 3.24333 3.25729 3.33906 3.35953 3.72814 4.28083 4.36140 4.37916 4.42331 4.66272 4.74375 4.75373 4.90896 4.95322 5.02275 5.11671 5.17798 5.20428 5.29338 5.35412 5.37806 5.47174 5.59786 5.72782 5.77972 5.90489 5.97266 6.06257 6.18264 6.32732 6.40375 6.45515 6.56337 6.87284 6.89362 6.95651 6.97770 6.99765 7.39852 7.49203 7.50625 7.65834 8.45040 8.94252 9.48777 11.01966 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002465 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.500034 B =11358.323862 C =11699.195556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.017 4.017 11 C -0.123 4.123 12 C -0.103 4.103 13 C -0.088 4.088 14 C -0.009 4.009 15 C -0.111 4.111 16 C -0.111 4.111 17 C 0.052 3.948 18 C 0.070 3.930 19 C -0.116 4.116 20 O -0.319 6.319 21 C 0.059 3.941 22 C -0.187 4.187 23 C 0.060 3.940 24 O -0.321 6.321 25 C -0.103 4.103 26 C -0.122 4.122 27 H 0.265 0.735 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.376 -19.283 1.264 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.026 4.026 10 C -0.017 4.017 11 C -0.141 4.141 12 C -0.121 4.121 13 C -0.088 4.088 14 C -0.009 4.009 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.008 3.992 18 C 0.026 3.974 19 C -0.135 4.135 20 O -0.236 6.236 21 C -0.015 4.015 22 C -0.225 4.225 23 C -0.015 4.015 24 O -0.237 6.237 25 C -0.121 4.121 26 C -0.140 4.140 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.994 -19.396 1.353 27.181 hybrid contribution 0.509 0.918 0.040 1.050 sum 19.503 -18.478 1.394 26.903 Atomic orbital electron populations 1.69898 1.06261 1.27033 1.50448 1.25004 0.94751 0.99039 0.94450 0.86801 0.80381 0.83646 0.78654 1.20139 1.21215 1.18929 1.20904 0.88092 0.94730 1.51514 0.90768 1.18865 0.97581 0.88609 0.97514 1.20429 0.91113 0.97914 0.92205 1.21021 1.00206 0.94409 0.98426 1.21091 0.99511 0.94868 0.96583 1.18454 1.04442 0.91935 0.93991 1.18771 0.96776 0.93172 0.92211 1.21194 0.99637 0.93875 0.98179 1.20991 1.00991 0.93982 0.96960 1.19164 1.02340 0.85241 0.92477 1.19008 1.02118 0.91348 0.84947 1.21169 1.01420 0.91941 0.98938 1.86382 1.25847 1.75251 1.36117 1.22615 0.81796 0.96207 1.00928 1.22473 1.03231 1.00149 0.96617 1.22610 0.82672 1.02516 0.93725 1.86338 1.30117 1.22736 1.84544 1.21114 0.99457 0.94866 0.96670 1.21021 1.00180 0.94353 0.98443 0.92540 0.95268 0.95702 0.85941 0.86422 0.84652 0.84791 0.84443 0.92441 0.87922 0.89313 0.89858 0.92540 0.88044 0.86514 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.51 -14.38 9.65 -34.44 -0.33 -14.71 16 8 H 0.07 2.28 7.98 -52.48 -0.42 1.87 16 9 C 0.01 0.27 4.17 -29.04 -0.12 0.14 16 10 C -0.02 -0.34 5.07 -104.56 -0.53 -0.87 16 11 C -0.12 -2.23 9.68 -39.63 -0.38 -2.61 16 12 C -0.10 -1.61 9.43 -39.25 -0.37 -1.98 16 13 C -0.09 -1.37 5.88 -104.90 -0.62 -1.99 16 14 C -0.01 -0.12 5.88 -104.86 -0.62 -0.74 16 15 C -0.11 -1.33 9.42 -39.22 -0.37 -1.69 16 16 C -0.11 -1.26 9.99 -39.51 -0.39 -1.65 16 17 C 0.05 0.65 5.76 -39.21 -0.23 0.42 16 18 C 0.07 0.91 5.72 -39.34 -0.23 0.69 16 19 C -0.12 -1.54 9.37 -39.13 -0.37 -1.91 16 20 O -0.32 -4.02 10.16 -36.76 -0.37 -4.39 16 21 C 0.06 0.50 6.51 36.68 0.24 0.74 16 22 C -0.19 -1.30 5.92 -27.68 -0.16 -1.46 16 23 C 0.06 0.47 6.52 36.68 0.24 0.71 16 24 O -0.32 -3.81 10.14 -36.72 -0.37 -4.19 16 25 C -0.10 -1.66 9.43 -39.25 -0.37 -2.03 16 26 C -0.12 -2.25 9.68 -39.63 -0.38 -2.63 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 29 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.12 1.49 6.20 -52.49 -0.33 1.16 16 32 H 0.14 1.37 6.19 -52.49 -0.32 1.05 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.69 6.21 -52.49 -0.33 1.37 16 35 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.41 7.94 -51.92 -0.41 0.00 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.12 1.58 6.20 -52.49 -0.33 1.25 16 42 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -32.27 344.38 -9.97 -42.24 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.43 Total: 0.97 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -5.09 Total: -29.68 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.75 Total: -8.57 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.27 -9.97 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242207648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds