Wall clock time and date at job start Tue Mar 31 2020 10:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47228 * 240.00272 * 2 1 3 5 5 N 1.46503 * 109.47176 * 64.99447 * 4 2 1 6 6 C 1.36935 * 119.99749 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99672 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47314 * 60.00027 * 10 8 6 12 12 H 1.48496 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47074 * 299.99931 * 10 8 6 14 14 C 1.52999 * 109.47227 * 119.99913 * 2 1 3 15 15 N 1.46505 * 109.47192 * 295.00016 * 14 2 1 16 16 C 1.34777 * 119.99724 * 180.02562 * 15 14 2 17 17 O 1.21623 * 120.00245 * 359.97438 * 16 15 14 18 18 C 1.47171 * 119.99849 * 179.72618 * 16 15 14 19 19 S 1.77339 * 128.47246 * 0.29347 * 18 16 15 20 20 N 1.56637 * 95.28231 * 180.02562 * 19 18 16 21 21 N 1.27342 * 109.73976 * 0.02562 * 20 19 18 22 22 C 1.31234 * 120.03767 * 359.69112 * 21 20 19 23 23 C 1.50698 * 124.05767 * 180.34709 * 22 21 20 24 24 C 1.53007 * 117.49932 * 8.95738 * 23 22 21 25 25 C 1.52999 * 117.49899 * 300.29497 * 23 22 21 26 26 H 1.09001 * 109.47487 * 59.99951 * 1 2 3 27 27 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46864 * 300.00168 * 1 2 3 29 29 H 1.08999 * 109.47129 * 184.99735 * 4 2 1 30 30 H 1.09002 * 109.46425 * 305.00064 * 4 2 1 31 31 H 0.96995 * 119.99476 * 0.02562 * 5 4 2 32 32 H 0.97004 * 120.00408 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47128 * 175.00488 * 14 2 1 34 34 H 1.08993 * 109.47209 * 55.00207 * 14 2 1 35 35 H 0.97000 * 119.99792 * 359.97438 * 15 14 2 36 36 H 1.09004 * 115.55141 * 154.62214 * 23 22 21 37 37 H 1.08998 * 117.49489 * 359.97438 * 24 23 22 38 38 H 1.08997 * 117.49842 * 145.02050 * 24 23 22 39 39 H 1.09005 * 117.49965 * 214.97882 * 25 23 22 40 40 H 1.09001 * 117.49874 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 2.0010 -0.4208 -3.6856 7 1 2.5614 -1.3385 -3.7866 8 6 1.6341 0.2964 -4.8160 9 7 0.9516 1.4150 -4.6930 10 14 2.1103 -0.3255 -6.5119 11 1 1.5169 -1.6690 -6.7312 12 1 1.6037 0.6144 -7.5440 13 1 3.5894 -0.4158 -6.6087 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4424 16 6 1.9965 -0.4131 3.6659 17 8 2.6283 -1.4461 3.7795 18 6 1.6124 0.3501 4.8642 19 16 0.6999 1.8677 4.9602 20 7 0.7441 1.9639 6.5230 21 7 1.3792 0.9674 6.9975 22 6 1.8708 0.0569 6.1903 23 6 2.6293 -1.1602 6.6530 24 6 2.6537 -1.4485 8.1555 25 6 3.9122 -0.9307 7.4544 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2056 30 1 1.6053 -1.7197 -1.2951 31 1 1.1487 0.8594 -2.3517 32 1 0.6949 1.9160 -5.4830 33 1 3.1263 -0.7994 1.2056 34 1 1.6054 -1.7197 1.2952 35 1 1.1489 0.8595 2.3518 36 1 2.6043 -2.0149 5.9770 37 1 2.1215 -0.7575 8.8092 38 1 2.6452 -2.4928 8.4678 39 1 4.7312 -1.6346 7.3059 40 1 4.2079 0.1006 7.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:48 Heat of formation + Delta-G solvation = 65.774437 kcal Electronic energy + Delta-G solvation = -22328.951023 eV Core-core repulsion = 18886.440202 eV Total energy + Delta-G solvation = -3442.510821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43503 -39.78892 -37.35994 -36.91261 -34.54014 -32.79133 -32.07875 -30.13577 -28.13168 -26.55596 -25.47365 -24.01114 -22.75626 -22.67133 -21.95143 -20.82326 -19.92585 -18.45153 -17.88070 -16.96783 -16.52358 -16.32213 -15.86491 -15.48799 -14.93125 -14.72238 -14.35572 -14.28976 -13.70587 -13.44583 -13.14505 -12.74805 -12.61571 -12.42050 -12.25220 -12.11026 -11.85614 -11.55021 -11.12897 -10.96905 -10.81078 -10.76898 -10.70464 -10.63975 -10.51397 -10.27135 -10.21041 -10.06370 -9.78289 -9.71979 -9.28582 -8.91080 -6.96765 -5.80576 -3.09295 -0.64155 0.42138 1.08587 1.51986 2.67299 2.73375 3.38284 3.42229 3.46758 3.47571 3.63006 4.02255 4.38942 4.55143 4.57322 4.66888 4.71251 4.92712 5.10248 5.25507 5.27379 5.34631 5.53725 5.55512 5.69039 5.79151 5.83533 5.85507 5.87828 5.99372 6.12062 6.24296 6.33103 6.58131 6.69661 6.78757 7.08933 7.28987 7.66599 7.78195 8.38446 9.49808 10.06334 10.40979 11.42270 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.002381 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.134940 B =11758.239769 C =12487.939168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.714 5.714 16 C 0.600 3.400 17 O -0.513 6.513 18 C -0.285 4.285 19 S 0.420 5.580 20 N -0.252 5.252 21 N -0.248 5.248 22 C 0.131 3.869 23 C -0.089 4.089 24 C -0.161 4.161 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -1.267 24.316 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.004 3.996 15 N -0.366 5.366 16 C 0.383 3.617 17 O -0.389 6.389 18 C -0.426 4.426 19 S 0.557 5.443 20 N -0.233 5.233 21 N -0.114 5.114 22 C -0.015 4.015 23 C -0.111 4.111 24 C -0.199 4.199 25 C -0.192 4.192 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.034 -0.447 24.792 24.796 hybrid contribution 0.459 -0.686 -1.246 1.494 sum 0.425 -1.133 23.546 23.577 Atomic orbital electron populations 1.21815 0.94545 1.02114 1.01600 1.21586 0.96840 1.00640 0.94076 0.90333 1.20564 0.96665 0.94217 0.85256 1.42320 1.66994 1.27666 1.00551 1.19180 1.28896 1.05451 0.83624 0.91189 1.24736 1.00959 0.97372 0.97887 1.69640 1.43485 1.16509 1.28669 0.86253 0.78039 0.77717 0.84086 1.21241 1.21696 1.21250 1.21555 1.00629 0.95313 0.82122 1.45964 1.57196 1.27826 1.05602 1.16397 0.79848 0.84209 0.81220 1.90818 1.39311 1.23128 1.85687 1.27735 1.12066 1.03853 0.98959 1.82647 1.37893 1.13615 1.10147 1.78891 1.18304 1.18869 1.07226 1.70508 1.10039 0.99084 1.31773 1.21929 0.96731 0.96038 0.86846 1.20670 1.00011 0.94379 0.96029 1.23086 1.01076 1.02832 0.92862 1.23026 0.91185 1.03030 1.01999 0.90913 0.92640 0.93995 0.96046 0.95908 0.78190 0.93443 0.90657 0.90662 0.76572 0.83627 0.87585 0.87825 0.87547 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.16 3.01 5.65 -4.04 -0.02 2.99 16 5 N -0.73 -17.63 5.33 -59.91 -0.32 -17.95 16 6 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 10 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 14 C 0.13 1.54 5.06 -4.04 -0.02 1.52 16 15 N -0.71 -7.50 5.28 -61.46 -0.32 -7.82 16 16 C 0.60 7.06 7.80 -12.63 -0.10 6.96 16 17 O -0.51 -7.37 14.97 5.26 0.08 -7.29 16 18 C -0.29 -2.98 6.81 -35.95 -0.24 -3.22 16 19 S 0.42 3.49 23.05 -107.50 -2.48 1.01 16 20 N -0.25 -2.74 12.51 60.35 0.75 -1.99 16 21 N -0.25 -2.85 10.95 33.42 0.37 -2.48 16 22 C 0.13 1.44 6.59 -82.85 -0.55 0.89 16 23 C -0.09 -0.87 5.63 -91.77 -0.52 -1.38 16 24 C -0.16 -1.25 10.11 -26.69 -0.27 -1.51 16 25 C -0.15 -1.24 10.24 -26.69 -0.27 -1.51 16 26 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.38 9.64 6.85 -40.82 -0.28 9.36 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.40 3.38 7.08 -40.82 -0.29 3.09 16 36 H 0.15 1.52 6.64 -51.93 -0.34 1.18 16 37 H 0.11 0.87 7.80 -51.93 -0.41 0.47 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -31.74 352.95 -8.45 -40.19 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.41 Total: 6.72 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.13 Total: -5.88 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 1.20 Total: -57.11 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.08 Total: -7.29 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.48 Total: 1.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.74 -8.45 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.961 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds