Wall clock time and date at job start Tue Mar 31 2020 10:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47228 * 240.00272 * 2 1 3 5 5 N 1.46503 * 109.47176 * 64.99447 * 4 2 1 6 6 C 1.36935 * 119.99749 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99672 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47314 * 60.00027 * 10 8 6 12 12 H 1.48496 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47074 * 299.99931 * 10 8 6 14 14 C 1.52999 * 109.47227 * 119.99913 * 2 1 3 15 15 N 1.46505 * 109.47192 * 295.00016 * 14 2 1 16 16 C 1.34777 * 119.99724 * 180.02562 * 15 14 2 17 17 O 1.21623 * 120.00245 * 359.97438 * 16 15 14 18 18 C 1.47171 * 119.99849 * 179.72618 * 16 15 14 19 19 S 1.77339 * 128.47246 * 0.29347 * 18 16 15 20 20 N 1.56637 * 95.28231 * 180.02562 * 19 18 16 21 21 N 1.27342 * 109.73976 * 0.02562 * 20 19 18 22 22 C 1.31234 * 120.03767 * 359.69112 * 21 20 19 23 23 C 1.50698 * 124.05767 * 180.34709 * 22 21 20 24 24 C 1.53007 * 117.49932 * 8.95738 * 23 22 21 25 25 C 1.52999 * 117.49899 * 300.29497 * 23 22 21 26 26 H 1.09001 * 109.47487 * 59.99951 * 1 2 3 27 27 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46864 * 300.00168 * 1 2 3 29 29 H 1.08999 * 109.47129 * 184.99735 * 4 2 1 30 30 H 1.09002 * 109.46425 * 305.00064 * 4 2 1 31 31 H 0.96995 * 119.99476 * 0.02562 * 5 4 2 32 32 H 0.97004 * 120.00408 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47128 * 175.00488 * 14 2 1 34 34 H 1.08993 * 109.47209 * 55.00207 * 14 2 1 35 35 H 0.97000 * 119.99792 * 359.97438 * 15 14 2 36 36 H 1.09004 * 115.55141 * 154.62214 * 23 22 21 37 37 H 1.08998 * 117.49489 * 359.97438 * 24 23 22 38 38 H 1.08997 * 117.49842 * 145.02050 * 24 23 22 39 39 H 1.09005 * 117.49965 * 214.97882 * 25 23 22 40 40 H 1.09001 * 117.49874 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 2.0010 -0.4208 -3.6856 7 1 2.5614 -1.3385 -3.7866 8 6 1.6341 0.2964 -4.8160 9 7 0.9516 1.4150 -4.6930 10 14 2.1103 -0.3255 -6.5119 11 1 1.5169 -1.6690 -6.7312 12 1 1.6037 0.6144 -7.5440 13 1 3.5894 -0.4158 -6.6087 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4424 16 6 1.9965 -0.4131 3.6659 17 8 2.6283 -1.4461 3.7795 18 6 1.6124 0.3501 4.8642 19 16 0.6999 1.8677 4.9602 20 7 0.7441 1.9639 6.5230 21 7 1.3792 0.9674 6.9975 22 6 1.8708 0.0569 6.1903 23 6 2.6293 -1.1602 6.6530 24 6 2.6537 -1.4485 8.1555 25 6 3.9122 -0.9307 7.4544 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2056 30 1 1.6053 -1.7197 -1.2951 31 1 1.1487 0.8594 -2.3517 32 1 0.6949 1.9160 -5.4830 33 1 3.1263 -0.7994 1.2056 34 1 1.6054 -1.7197 1.2952 35 1 1.1489 0.8595 2.3518 36 1 2.6043 -2.0149 5.9770 37 1 2.1215 -0.7575 8.8092 38 1 2.6452 -2.4928 8.4678 39 1 4.7312 -1.6346 7.3059 40 1 4.2079 0.1006 7.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:47 Heat of formation + Delta-G solvation = 44.436322 kcal Electronic energy + Delta-G solvation = -22329.876313 eV Core-core repulsion = 18886.440202 eV Total energy + Delta-G solvation = -3443.436111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22363 -40.74038 -38.29453 -37.92475 -36.01994 -34.24289 -33.02494 -31.85568 -29.01780 -27.68963 -26.99892 -25.05201 -24.14967 -23.28146 -22.95719 -21.77682 -21.10620 -19.33178 -19.14933 -18.46052 -17.35269 -17.24291 -16.79880 -16.47080 -16.41436 -15.68433 -15.54215 -15.40193 -15.33207 -14.76401 -14.23839 -14.13991 -13.65761 -13.55599 -13.33760 -12.96653 -12.92568 -12.76327 -12.44210 -12.26014 -12.20844 -12.16955 -11.98455 -11.73713 -11.64164 -11.50614 -11.45552 -11.08807 -10.98240 -10.91185 -10.52111 -10.21255 -8.96772 -7.93669 -5.21372 -1.43104 -0.32355 0.33437 0.71831 1.49287 1.51495 1.57515 1.78120 1.81853 2.57974 2.64026 2.95650 3.28863 3.40283 3.57454 3.71949 3.89145 3.97257 3.98148 4.07066 4.08272 4.36821 4.54699 4.55761 4.72375 4.75484 4.77935 4.95158 4.96937 5.05230 5.11291 5.16192 5.21785 5.25794 5.39664 5.49655 5.52331 6.22848 6.29486 6.50933 6.90046 7.36330 8.12349 8.35746 9.29515 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.002381 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.134940 B =11758.239769 C =12487.939168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.245 4.245 7 H 0.074 0.926 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.705 5.705 16 C 0.605 3.395 17 O -0.542 6.542 18 C -0.307 4.307 19 S 0.502 5.498 20 N -0.280 5.280 21 N -0.267 5.267 22 C 0.127 3.873 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.149 4.149 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.377 0.623 32 H 0.251 0.749 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -1.445 25.108 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.100 0.900 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.092 0.908 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.800 3.200 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.015 3.985 15 N -0.357 5.357 16 C 0.388 3.612 17 O -0.421 6.421 18 C -0.448 4.448 19 S 0.639 5.361 20 N -0.261 5.261 21 N -0.132 5.132 22 C -0.021 4.021 23 C -0.131 4.131 24 C -0.186 4.186 25 C -0.187 4.187 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.209 0.791 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.049 -0.631 25.618 25.626 hybrid contribution 0.419 -0.617 -1.463 1.642 sum 0.468 -1.249 24.156 24.193 Atomic orbital electron populations 1.21767 0.93898 1.02164 1.01840 1.21369 0.97198 1.00304 0.92751 0.90039 1.20727 0.96681 0.94162 0.85465 1.42503 1.66842 1.27838 1.01331 1.19581 1.27825 1.05238 0.85076 0.90823 1.25513 1.01789 0.97924 1.01417 1.69785 1.45126 1.17784 1.29137 0.85253 0.77877 0.77153 0.79732 1.20499 1.22196 1.20529 1.21297 1.00359 0.95138 0.81717 1.45777 1.57062 1.28039 1.04812 1.16469 0.79261 0.83834 0.81587 1.90805 1.40643 1.24468 1.86135 1.27644 1.13474 1.05323 0.98350 1.82293 1.35152 1.10943 1.07753 1.78663 1.18872 1.19245 1.09271 1.70564 1.10897 0.99454 1.32276 1.22143 0.96554 0.96251 0.87117 1.20694 1.01416 0.93995 0.96998 1.23140 1.00374 1.03741 0.91359 1.23095 0.91257 1.03214 1.01151 0.93788 0.92710 0.90582 0.96007 0.95887 0.79057 0.94004 0.90953 0.90636 0.75216 0.84625 0.88107 0.86024 0.86235 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.94 71.98 0.64 -2.89 16 2 C -0.10 -2.58 2.46 -10.80 -0.03 -2.61 16 3 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 4 C 0.16 5.74 5.65 86.38 0.49 6.23 16 5 N -0.74 -35.79 5.33 -343.45 -1.83 -37.62 16 6 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16 7 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 9 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 10 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.14 3.12 5.06 86.38 0.44 3.56 16 15 N -0.70 -13.31 5.28 -466.62 -2.46 -15.78 16 16 C 0.60 13.37 7.80 86.59 0.68 14.05 16 17 O -0.54 -15.18 14.97 -4.10 -0.06 -15.24 16 18 C -0.31 -5.99 6.81 24.62 0.17 -5.82 16 19 S 0.50 7.23 23.05 -56.49 -1.30 5.93 16 20 N -0.28 -5.69 12.51 37.02 0.46 -5.23 16 21 N -0.27 -5.91 10.95 -48.19 -0.53 -6.44 16 22 C 0.13 2.68 6.59 42.65 0.28 2.96 16 23 C -0.11 -2.07 5.63 -11.54 -0.06 -2.13 16 24 C -0.15 -2.14 10.11 30.62 0.31 -1.84 16 25 C -0.15 -2.26 10.24 30.62 0.31 -1.95 16 26 H 0.04 1.39 7.18 -2.39 -0.02 1.37 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.39 7.18 -2.39 -0.02 1.37 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.38 19.08 6.85 -92.71 -0.64 18.44 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 5.78 7.08 -92.71 -0.66 5.12 16 36 H 0.14 2.84 6.64 -2.39 -0.02 2.82 16 37 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 1.45 8.14 -2.38 -0.02 1.44 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.94 352.95 0.91 -67.03 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.21 Total: 24.07 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.53 Total: -6.67 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -4.08 Total: -122.48 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.06 Total: -15.24 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.30 Total: 5.93 kcal Total: -67.94 0.91 -67.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.461 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds