Wall clock time and date at job start Tue Mar 31 2020 10:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21629 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.47168 * 120.00166 * 179.97438 * 16 15 14 19 19 S 1.77332 * 128.47587 * 0.02668 * 18 16 15 20 20 N 1.56635 * 95.28461 * 179.97438 * 19 18 16 21 21 N 1.27332 * 109.74126 * 359.97438 * 20 19 18 22 22 C 1.31239 * 120.03752 * 359.72026 * 21 20 19 23 23 C 1.50704 * 124.05891 * 180.33895 * 22 21 20 24 24 C 1.53006 * 117.49577 * 8.91526 * 23 22 21 25 25 C 1.53000 * 117.49710 * 300.25988 * 23 22 21 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 30 30 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 36 36 H 1.08996 * 115.55223 * 154.58166 * 23 22 21 37 37 H 1.08997 * 117.50119 * 0.02562 * 24 23 22 38 38 H 1.08998 * 117.49958 * 145.02182 * 24 23 22 39 39 H 1.09003 * 117.49384 * 214.98163 * 25 23 22 40 40 H 1.08996 * 117.49922 * 359.97017 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 1.9557 -0.1505 6.0117 10 14 0.6536 1.8766 4.6422 11 1 -0.7997 1.5720 4.6600 12 1 0.9828 2.7850 5.7698 13 1 1.0059 2.5339 3.3580 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4456 -3.7795 18 6 1.6066 0.3469 -4.8645 19 16 0.6936 1.8640 -4.9605 20 7 0.7305 1.9559 -6.5238 21 7 1.3634 0.9582 -6.9984 22 6 1.8689 0.0560 -6.1904 23 6 2.6391 -1.1541 -6.6525 24 6 3.0190 -1.2268 -8.1328 25 6 1.9206 -2.1375 -7.5785 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2950 31 1 1.1483 0.8591 2.3518 32 1 1.6960 0.3485 6.8020 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 3.3447 -1.5660 -5.9310 37 1 2.7123 -0.3992 -8.7724 38 1 3.9743 -1.6868 -8.3853 39 1 2.1538 -3.1964 -7.4664 40 1 0.8908 -1.9095 -7.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:52 Heat of formation + Delta-G solvation = 70.223509 kcal Electronic energy + Delta-G solvation = -22407.772405 eV Core-core repulsion = 18965.454510 eV Total energy + Delta-G solvation = -3442.317895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48934 -39.86231 -37.41557 -37.05768 -34.68663 -32.83486 -32.13243 -30.61195 -28.21720 -26.72801 -25.72619 -24.03499 -22.71410 -22.58067 -21.80432 -20.90937 -20.12392 -18.51816 -18.04630 -17.36311 -16.58078 -16.33393 -15.98778 -15.53084 -15.00398 -14.75412 -14.49250 -14.31791 -13.84281 -13.50130 -13.30226 -12.77834 -12.65574 -12.57898 -12.32859 -12.23426 -11.88796 -11.59437 -11.52743 -11.14710 -10.86752 -10.84798 -10.77693 -10.72956 -10.64721 -10.29844 -10.26716 -10.14962 -9.83017 -9.62977 -9.36520 -8.95206 -7.28772 -5.80962 -3.17142 -0.69759 0.36318 1.02883 1.46930 2.61280 2.65608 3.31862 3.33476 3.33901 3.40928 3.59118 3.97515 4.32110 4.53129 4.54157 4.63005 4.67051 4.73694 4.96577 5.11198 5.21109 5.31580 5.48533 5.52449 5.55294 5.63501 5.71248 5.75023 5.77148 5.83358 5.93533 6.08720 6.17652 6.35692 6.57120 6.65967 7.00928 7.23502 7.71334 7.94877 8.37690 9.16311 9.88280 10.07446 11.37389 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.002581 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.730155 B =10847.900256 C =11672.898783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 H 0.078 0.922 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.127 3.873 15 N -0.716 5.716 16 C 0.601 3.399 17 O -0.511 6.511 18 C -0.286 4.286 19 S 0.417 5.583 20 N -0.251 5.251 21 N -0.248 5.248 22 C 0.132 3.868 23 C -0.090 4.090 24 C -0.161 4.161 25 C -0.154 4.154 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.399 0.601 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 1.807 -27.651 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.096 0.904 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.367 5.367 16 C 0.384 3.616 17 O -0.387 6.387 18 C -0.426 4.426 19 S 0.554 5.446 20 N -0.232 5.232 21 N -0.113 5.113 22 C -0.014 4.014 23 C -0.112 4.112 24 C -0.198 4.198 25 C -0.192 4.192 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.699 2.569 -28.081 28.327 hybrid contribution -0.296 0.516 0.351 0.690 sum -2.995 3.085 -27.730 28.062 Atomic orbital electron populations 1.21839 0.94652 1.02470 1.01316 1.21641 0.96755 1.00707 0.94483 0.90383 1.20539 0.97277 0.94243 0.84167 1.42677 1.68032 1.26998 1.02314 1.19053 1.29663 1.07129 0.81650 0.89152 1.24681 1.00775 0.98615 0.95103 1.69697 1.51193 1.40283 0.96921 0.86553 0.80438 0.84602 0.76923 1.21052 1.21700 1.20384 1.21532 1.00804 0.95342 0.81906 1.45950 1.57300 1.27861 1.05636 1.16388 0.79882 0.84174 0.81187 1.90828 1.39262 1.22935 1.85689 1.27720 1.11931 1.03994 0.98980 1.82615 1.38051 1.13666 1.10299 1.78901 1.18430 1.18704 1.07122 1.70507 1.09869 0.99199 1.31764 1.21945 0.96473 0.96182 0.86835 1.20677 1.02474 0.92852 0.95147 1.23086 1.00004 1.02748 0.93994 1.23025 0.98064 0.96757 1.01358 0.92146 0.91628 0.93712 0.95166 0.95003 0.80619 0.93013 0.90447 0.90444 0.76650 0.83602 0.87583 0.87789 0.87515 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.94 37.16 0.33 -1.42 16 2 C -0.12 -1.50 2.46 -90.62 -0.22 -1.72 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.17 2.91 5.65 -4.04 -0.02 2.89 16 5 N -0.75 -16.96 5.13 -59.91 -0.31 -17.27 16 6 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 7 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 10 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 14 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 15 N -0.72 -6.95 5.28 -61.46 -0.32 -7.28 16 16 C 0.60 6.70 7.80 -12.64 -0.10 6.60 16 17 O -0.51 -7.06 14.97 5.25 0.08 -6.99 16 18 C -0.29 -2.83 6.81 -35.95 -0.24 -3.08 16 19 S 0.42 3.24 23.05 -107.50 -2.48 0.76 16 20 N -0.25 -2.62 12.51 60.35 0.75 -1.87 16 21 N -0.25 -2.74 10.95 33.42 0.37 -2.38 16 22 C 0.13 1.39 6.59 -82.84 -0.55 0.85 16 23 C -0.09 -0.84 5.63 -91.77 -0.52 -1.36 16 24 C -0.16 -1.20 10.11 -26.69 -0.27 -1.47 16 25 C -0.15 -1.18 10.24 -26.69 -0.27 -1.46 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.92 7.18 -51.93 -0.37 0.54 16 28 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.36 7.83 4.71 -40.82 -0.19 7.63 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.02 7.08 -40.82 -0.29 2.73 16 36 H 0.15 1.48 6.64 -51.93 -0.34 1.13 16 37 H 0.11 0.84 7.80 -51.93 -0.41 0.44 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -32.82 349.84 -8.09 -40.91 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.37 Total: 5.92 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.14 Total: -5.66 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 1.26 Total: -56.94 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.08 Total: -6.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.48 Total: 0.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.82 -8.09 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.135 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds