Wall clock time and date at job start Tue Mar 31 2020 10:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21629 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.47168 * 120.00166 * 179.97438 * 16 15 14 19 19 S 1.77332 * 128.47587 * 0.02668 * 18 16 15 20 20 N 1.56635 * 95.28461 * 179.97438 * 19 18 16 21 21 N 1.27332 * 109.74126 * 359.97438 * 20 19 18 22 22 C 1.31239 * 120.03752 * 359.72026 * 21 20 19 23 23 C 1.50704 * 124.05891 * 180.33895 * 22 21 20 24 24 C 1.53006 * 117.49577 * 8.91526 * 23 22 21 25 25 C 1.53000 * 117.49710 * 300.25988 * 23 22 21 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 30 30 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 36 36 H 1.08996 * 115.55223 * 154.58166 * 23 22 21 37 37 H 1.08997 * 117.50119 * 0.02562 * 24 23 22 38 38 H 1.08998 * 117.49958 * 145.02182 * 24 23 22 39 39 H 1.09003 * 117.49384 * 214.98163 * 25 23 22 40 40 H 1.08996 * 117.49922 * 359.97017 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 1.9557 -0.1505 6.0117 10 14 0.6536 1.8766 4.6422 11 1 -0.7997 1.5720 4.6600 12 1 0.9828 2.7850 5.7698 13 1 1.0059 2.5339 3.3580 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4456 -3.7795 18 6 1.6066 0.3469 -4.8645 19 16 0.6936 1.8640 -4.9605 20 7 0.7305 1.9559 -6.5238 21 7 1.3634 0.9582 -6.9984 22 6 1.8689 0.0560 -6.1904 23 6 2.6391 -1.1541 -6.6525 24 6 3.0190 -1.2268 -8.1328 25 6 1.9206 -2.1375 -7.5785 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2950 31 1 1.1483 0.8591 2.3518 32 1 1.6960 0.3485 6.8020 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 3.3447 -1.5660 -5.9310 37 1 2.7123 -0.3992 -8.7724 38 1 3.9743 -1.6868 -8.3853 39 1 2.1538 -3.1964 -7.4664 40 1 0.8908 -1.9095 -7.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:51 Heat of formation + Delta-G solvation = 47.175142 kcal Electronic energy + Delta-G solvation = -22408.771857 eV Core-core repulsion = 18965.454510 eV Total energy + Delta-G solvation = -3443.317347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22908 -40.75082 -38.38315 -37.94431 -36.10583 -34.28338 -33.10201 -32.28940 -29.03970 -27.82350 -27.08483 -24.94280 -23.92989 -23.28723 -22.93804 -21.81627 -21.26069 -19.69955 -19.17869 -18.55071 -17.38384 -17.15617 -16.88336 -16.48121 -16.39905 -15.84970 -15.52039 -15.45630 -15.23268 -14.88258 -14.24836 -14.20362 -13.84446 -13.62026 -13.36078 -13.19875 -12.94721 -12.85583 -12.44690 -12.27623 -12.24366 -12.06203 -11.97482 -11.75185 -11.69898 -11.51845 -11.46245 -11.09639 -10.98488 -10.96320 -10.52518 -10.21979 -9.27887 -8.00970 -5.34900 -1.43437 -0.32911 0.33106 0.71446 1.38830 1.43995 1.51313 1.78044 1.80356 2.50530 2.63366 2.95233 3.28347 3.30561 3.54256 3.57081 3.88340 3.95063 3.96723 4.02321 4.06497 4.13742 4.53075 4.53994 4.70389 4.75028 4.77712 4.93982 4.96153 5.03195 5.09426 5.13732 5.19868 5.25022 5.33625 5.47017 5.77784 6.22401 6.22872 6.50825 6.90267 7.10152 7.85389 8.05429 9.20642 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.002581 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.730155 B =10847.900256 C =11672.898783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.159 3.841 5 N -0.754 5.754 6 C -0.235 4.235 7 H 0.054 0.946 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.958 3.042 11 H -0.277 1.277 12 H -0.299 1.299 13 H -0.245 1.245 14 C 0.137 3.863 15 N -0.704 5.704 16 C 0.604 3.396 17 O -0.542 6.542 18 C -0.307 4.307 19 S 0.505 5.495 20 N -0.280 5.280 21 N -0.268 5.268 22 C 0.126 3.874 23 C -0.109 4.109 24 C -0.150 4.150 25 C -0.149 4.149 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.368 0.632 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 3.639 -29.647 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.108 0.892 4 C 0.032 3.968 5 N -0.401 5.401 6 C -0.366 4.366 7 H 0.072 0.928 8 C -0.259 4.259 9 N -0.637 5.637 10 Si 0.784 3.216 11 H -0.203 1.203 12 H -0.226 1.226 13 H -0.169 1.169 14 C 0.013 3.987 15 N -0.356 5.356 16 C 0.388 3.612 17 O -0.421 6.421 18 C -0.448 4.448 19 S 0.641 5.359 20 N -0.261 5.261 21 N -0.132 5.132 22 C -0.021 4.021 23 C -0.131 4.131 24 C -0.187 4.187 25 C -0.186 4.186 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.202 0.798 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.981 4.422 -30.148 30.729 hybrid contribution 0.129 -0.117 0.986 1.001 sum -3.851 4.304 -29.162 29.728 Atomic orbital electron populations 1.21854 0.93622 1.02612 1.02244 1.21433 0.97449 1.00648 0.92485 0.89186 1.20707 0.97107 0.94244 0.84722 1.42635 1.67954 1.27606 1.01877 1.19030 1.28010 1.05626 0.83978 0.92839 1.25582 1.02763 1.03013 0.94578 1.69899 1.53468 1.42347 0.97957 0.85373 0.78710 0.79541 0.77950 1.20258 1.22587 1.16867 1.21295 1.00454 0.95195 0.81762 1.45742 1.57083 1.28088 1.04735 1.16473 0.79300 0.83787 0.81628 1.90816 1.40680 1.24398 1.86166 1.27642 1.13247 1.05553 0.98341 1.82213 1.35112 1.10795 1.07745 1.78656 1.19070 1.19076 1.09317 1.70565 1.10790 0.99570 1.32317 1.22139 0.96396 0.96381 0.87193 1.20688 1.03177 0.93357 0.95869 1.23135 1.00694 1.02421 0.92474 1.23089 0.97976 0.97235 1.00340 0.92519 0.93222 0.90214 0.95626 0.95500 0.79760 0.93377 0.90956 0.90696 0.75121 0.84690 0.88101 0.86118 0.86275 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.94 71.98 0.64 -2.40 16 2 C -0.10 -2.32 2.46 -10.79 -0.03 -2.35 16 3 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 4 C 0.16 5.43 5.65 86.38 0.49 5.92 16 5 N -0.75 -33.02 5.13 -343.46 -1.76 -34.78 16 6 C -0.24 -13.15 10.47 84.03 0.88 -12.27 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 9 N -0.99 -62.74 13.97 21.65 0.30 -62.44 16 10 Si 0.96 43.65 27.74 68.60 1.90 45.55 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 13 H -0.24 -9.69 6.52 99.48 0.65 -9.04 16 14 C 0.14 2.78 5.06 86.38 0.44 3.21 16 15 N -0.70 -11.72 5.28 -466.62 -2.46 -14.18 16 16 C 0.60 12.43 7.80 86.59 0.68 13.11 16 17 O -0.54 -14.60 14.97 -4.12 -0.06 -14.66 16 18 C -0.31 -5.54 6.81 24.62 0.17 -5.38 16 19 S 0.50 6.39 23.05 -56.49 -1.30 5.09 16 20 N -0.28 -5.34 12.51 37.02 0.46 -4.88 16 21 N -0.27 -5.64 10.95 -48.18 -0.53 -6.17 16 22 C 0.13 2.54 6.59 42.65 0.28 2.82 16 23 C -0.11 -1.99 5.63 -11.54 -0.06 -2.05 16 24 C -0.15 -2.09 10.11 30.62 0.31 -1.78 16 25 C -0.15 -2.15 10.24 30.62 0.31 -1.83 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.22 7.18 -2.39 -0.02 1.20 16 28 H 0.08 1.10 7.18 -2.39 -0.02 1.08 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.37 14.97 4.71 -92.71 -0.44 14.53 16 32 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 4.60 7.08 -92.71 -0.66 3.95 16 36 H 0.14 2.75 6.64 -2.39 -0.02 2.73 16 37 H 0.10 1.53 7.80 -2.39 -0.02 1.51 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.70 349.84 1.05 -71.65 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.07 Total: 21.31 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.57 Total: -6.48 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -3.99 Total: -122.45 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.06 Total: -14.66 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.90 Total: 45.55 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.30 Total: 5.09 kcal Total: -72.70 1.05 -71.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.826 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds