Wall clock time and date at job start Tue Mar 31 2020 10:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 S 1.81399 * 109.47418 * 89.99860 * 9 8 7 11 11 O 1.42098 * 108.57764 * 294.49010 * 10 9 8 12 12 O 1.42106 * 108.57467 * 65.51255 * 10 9 8 13 13 C 1.81400 * 101.92248 * 179.97438 * 10 9 8 14 14 C 1.52990 * 109.47053 * 180.02562 * 13 10 9 15 15 C 1.50707 * 109.47222 * 180.02562 * 14 13 10 16 16 H 1.07994 * 119.99373 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99952 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99870 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00366 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47216 * 89.99647 * 19 17 15 21 21 H 1.48499 * 109.47094 * 209.99580 * 19 17 15 22 22 H 1.48498 * 109.47228 * 330.00055 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 24 24 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 25 25 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 26 26 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 27 27 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 30 30 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 31 31 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 32 32 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 33 33 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 35 35 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 37 37 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 38 38 H 1.09002 * 109.46784 * 300.00255 * 13 10 9 39 39 H 1.08998 * 109.46834 * 59.99759 * 13 10 9 40 40 H 1.09002 * 109.47530 * 299.99794 * 14 13 10 41 41 H 1.08998 * 109.47500 * 60.00163 * 14 13 10 42 42 H 0.97001 * 120.00561 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00299 * 179.97438 * 23 8 7 44 44 H 1.07997 * 120.00423 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 16 5.0455 -3.5074 4.3683 11 8 4.8419 -4.5312 3.4042 12 8 6.0031 -2.4901 4.1085 13 6 5.4433 -4.2819 5.9597 14 6 6.7858 -5.0077 5.8521 15 6 7.1161 -5.6516 7.1741 16 1 6.4361 -5.5533 8.0073 17 6 8.2857 -6.3671 7.3192 18 7 8.5741 -6.9286 8.4729 19 14 9.4614 -6.5376 5.8777 20 1 10.4358 -5.4172 5.8984 21 1 10.1886 -7.8281 5.9821 22 1 8.6944 -6.5030 4.6066 23 6 3.2880 -0.6902 3.2690 24 6 2.8265 -0.0384 2.1407 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7218 -1.2489 34 1 1.0771 -2.5585 0.7387 35 1 1.8973 -3.7190 2.7496 36 1 3.5709 -2.0006 5.5310 37 1 2.7277 -3.4824 5.0198 38 1 5.5062 -3.5146 6.7314 39 1 4.6632 -4.9968 6.2209 40 1 6.7234 -5.7748 5.0803 41 1 7.5658 -4.2924 5.5912 42 1 9.3971 -7.4316 8.5753 43 1 3.9085 -0.1651 3.9801 44 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:03 Heat of formation + Delta-G solvation = -70.363888 kcal Electronic energy + Delta-G solvation = -23183.966213 eV Core-core repulsion = 19806.799583 eV Total energy + Delta-G solvation = -3377.166629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15382 -36.97369 -36.57335 -35.61067 -33.93258 -32.26550 -31.48712 -31.29576 -27.69368 -27.55246 -27.35966 -25.86816 -22.55899 -22.43221 -21.03564 -19.43085 -18.55978 -17.28404 -16.91317 -16.07738 -16.06059 -15.49445 -15.32557 -14.94099 -14.57650 -14.32381 -14.17032 -13.97439 -13.71456 -13.60519 -13.04830 -12.80529 -12.78069 -12.49284 -12.33107 -12.07084 -11.99433 -11.87906 -11.69831 -11.61643 -11.54838 -11.33229 -11.23853 -11.14291 -10.96398 -10.76276 -10.72790 -10.41518 -10.09498 -9.63653 -9.34254 -9.05439 -8.65087 -8.59784 -6.15798 -4.17067 0.19781 1.22914 1.27167 3.12902 3.28495 3.35613 3.41341 3.56678 3.90005 4.21454 4.27051 4.37577 4.43840 4.50906 4.68312 4.75762 4.86703 4.97755 5.04749 5.16652 5.23971 5.28114 5.30974 5.35102 5.44586 5.46623 5.50673 5.54358 5.55960 5.57383 5.65252 5.74818 5.86980 5.90542 5.93835 5.99720 6.27982 6.29369 6.37749 6.45250 6.82084 6.85419 6.97970 7.55965 8.36809 8.84812 9.44057 10.96485 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.002761 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.491231 B =10137.340048 C =10301.844075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.068 4.068 6 C -0.115 4.115 7 C -0.101 4.101 8 C -0.088 4.088 9 C -0.578 4.578 10 S 2.393 3.607 11 O -0.940 6.940 12 O -0.940 6.940 13 C -0.567 4.567 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.261 1.261 23 C -0.101 4.101 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.266 0.734 43 H 0.130 0.870 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.562 15.249 -15.274 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.198 4.198 5 C -0.068 4.068 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.089 4.089 9 C -0.703 4.703 10 S 2.578 3.422 11 O -0.937 6.937 12 O -0.938 6.938 13 C -0.699 4.699 14 C -0.045 4.045 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.696 3.304 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.120 4.120 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.972 15.153 -15.981 27.803 hybrid contribution 0.191 -0.214 0.328 0.436 sum -16.781 14.939 -15.652 27.382 Atomic orbital electron populations 1.21886 0.93624 1.02133 1.01858 1.19523 0.95732 0.95123 0.92714 1.21976 1.01446 0.94870 1.01943 1.21908 1.01571 1.00275 0.96002 1.19890 0.97208 0.94077 0.95661 1.20938 1.00667 0.94266 0.97425 1.21143 0.96716 1.00084 0.94048 1.18978 1.00552 0.94655 0.94726 1.29470 1.23967 1.12612 1.04222 1.08982 0.76884 0.76479 0.79862 1.93540 1.85343 1.57003 1.57835 1.93540 1.57019 1.58713 1.84479 1.30082 1.09913 1.11918 1.18029 1.19426 0.88805 0.95841 1.00475 1.20864 1.06648 1.32771 0.95653 0.90410 1.24977 0.97637 0.94700 0.95799 1.69879 1.25293 1.34414 1.23820 0.86917 0.81669 0.78141 0.83717 1.19666 1.20786 1.18514 1.21172 0.98985 0.93740 0.98093 1.21164 0.98198 1.00439 0.94064 0.92485 0.92324 0.92358 0.92054 0.92338 0.92205 0.92283 0.92300 0.92248 0.85733 0.85205 0.84234 0.84235 0.85570 0.85553 0.94732 0.95170 0.92382 0.85214 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.38 16 3 C -0.15 -1.00 7.13 37.16 0.26 -0.73 16 4 C -0.14 -1.06 8.29 37.16 0.31 -0.76 16 5 C -0.07 -0.70 4.76 -104.62 -0.50 -1.19 16 6 C -0.12 -1.24 8.71 -39.59 -0.34 -1.58 16 7 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 8 C -0.09 -1.13 5.14 -104.62 -0.54 -1.66 16 9 C -0.58 -6.70 5.93 36.01 0.21 -6.48 16 10 S 2.39 39.71 4.70 -107.50 -0.51 39.21 16 11 O -0.94 -18.39 18.10 -57.83 -1.05 -19.43 16 12 O -0.94 -18.34 18.10 -57.83 -1.05 -19.39 16 13 C -0.57 -10.09 5.74 37.15 0.21 -9.88 16 14 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 15 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 19 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 24 C -0.12 -1.30 8.98 -39.58 -0.36 -1.66 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 28 H 0.06 0.44 7.52 -51.93 -0.39 0.05 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 31 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.12 1.08 7.10 -52.49 -0.37 0.71 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.14 1.24 8.08 -51.92 -0.42 0.82 16 37 H 0.14 1.24 8.09 -51.92 -0.42 0.82 16 38 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 39 H 0.13 1.97 8.14 -51.93 -0.42 1.54 16 40 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 41 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.13 1.13 5.90 -52.49 -0.31 0.82 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -35.45 368.63 -10.04 -45.49 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.23 Total: -0.72 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: -1.87 Total: -41.38 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.38 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -2.09 Total: -38.82 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.51 Total: 39.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.45 -10.04 -45.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.873 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds