Wall clock time and date at job start Tue Mar 31 2020 10:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 S 1.81399 * 109.47418 * 89.99860 * 9 8 7 11 11 O 1.42098 * 108.57764 * 294.49010 * 10 9 8 12 12 O 1.42106 * 108.57467 * 65.51255 * 10 9 8 13 13 C 1.81400 * 101.92248 * 179.97438 * 10 9 8 14 14 C 1.52990 * 109.47053 * 180.02562 * 13 10 9 15 15 C 1.50707 * 109.47222 * 180.02562 * 14 13 10 16 16 H 1.07994 * 119.99373 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99952 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99870 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00366 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47216 * 89.99647 * 19 17 15 21 21 H 1.48499 * 109.47094 * 209.99580 * 19 17 15 22 22 H 1.48498 * 109.47228 * 330.00055 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 24 24 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 25 25 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 26 26 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 27 27 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 30 30 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 31 31 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 32 32 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 33 33 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 35 35 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 37 37 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 38 38 H 1.09002 * 109.46784 * 300.00255 * 13 10 9 39 39 H 1.08998 * 109.46834 * 59.99759 * 13 10 9 40 40 H 1.09002 * 109.47530 * 299.99794 * 14 13 10 41 41 H 1.08998 * 109.47500 * 60.00163 * 14 13 10 42 42 H 0.97001 * 120.00561 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00299 * 179.97438 * 23 8 7 44 44 H 1.07997 * 120.00423 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 16 5.0455 -3.5074 4.3683 11 8 4.8419 -4.5312 3.4042 12 8 6.0031 -2.4901 4.1085 13 6 5.4433 -4.2819 5.9597 14 6 6.7858 -5.0077 5.8521 15 6 7.1161 -5.6516 7.1741 16 1 6.4361 -5.5533 8.0073 17 6 8.2857 -6.3671 7.3192 18 7 8.5741 -6.9286 8.4729 19 14 9.4614 -6.5376 5.8777 20 1 10.4358 -5.4172 5.8984 21 1 10.1886 -7.8281 5.9821 22 1 8.6944 -6.5030 4.6066 23 6 3.2880 -0.6902 3.2690 24 6 2.8265 -0.0384 2.1407 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7218 -1.2489 34 1 1.0771 -2.5585 0.7387 35 1 1.8973 -3.7190 2.7496 36 1 3.5709 -2.0006 5.5310 37 1 2.7277 -3.4824 5.0198 38 1 5.5062 -3.5146 6.7314 39 1 4.6632 -4.9968 6.2209 40 1 6.7234 -5.7748 5.0803 41 1 7.5658 -4.2924 5.5912 42 1 9.3971 -7.4316 8.5753 43 1 3.9085 -0.1651 3.9801 44 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:02 Heat of formation + Delta-G solvation = -92.987062 kcal Electronic energy + Delta-G solvation = -23184.947227 eV Core-core repulsion = 19806.799583 eV Total energy + Delta-G solvation = -3378.147644 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91958 -37.97123 -37.67994 -37.00263 -35.86951 -33.46772 -33.10640 -32.10168 -28.45997 -28.23220 -28.09126 -27.55993 -23.52414 -23.37023 -22.64572 -20.11977 -19.91940 -19.21539 -17.80675 -17.45158 -17.23873 -16.63090 -16.35257 -16.31477 -15.86341 -15.28894 -15.15165 -15.00255 -14.82483 -14.59458 -14.41083 -13.82203 -13.80434 -13.60962 -13.16542 -13.14505 -13.06202 -13.00431 -13.00070 -12.87780 -12.68837 -12.53917 -12.28608 -12.23690 -12.12287 -11.93559 -11.76741 -11.66857 -11.55128 -11.38410 -11.08463 -10.85138 -9.89737 -9.48378 -8.37614 -6.42628 -1.06354 0.36433 0.43041 1.30124 1.32134 1.43052 1.88722 2.28596 2.61862 2.80813 2.96430 3.07718 3.43653 3.69345 3.72342 3.91257 3.96153 4.07924 4.12145 4.12909 4.29277 4.37470 4.47461 4.53672 4.60910 4.62469 4.79673 4.81533 4.91259 4.96411 5.01295 5.04581 5.09748 5.10986 5.12103 5.13726 5.23773 5.35878 5.44682 5.47295 5.49828 5.51598 5.68892 6.01051 6.16152 6.63414 7.21880 8.77757 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.002761 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.491231 B =10137.340048 C =10301.844075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.067 4.067 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.543 4.543 10 S 2.397 3.603 11 O -0.978 6.978 12 O -0.977 6.977 13 C -0.578 4.578 14 C -0.018 4.018 15 C -0.527 4.527 16 H 0.054 0.946 17 C 0.014 3.986 18 N -0.939 5.939 19 Si 0.924 3.076 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.115 4.115 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.270 0.730 43 H 0.139 0.861 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 16.799 -16.833 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.068 4.068 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.117 4.117 9 C -0.673 4.673 10 S 2.587 3.413 11 O -0.975 6.975 12 O -0.975 6.975 13 C -0.708 4.708 14 C -0.056 4.056 15 C -0.566 4.566 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.578 5.578 19 Si 0.747 3.253 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.134 4.134 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.191 0.809 37 H 0.191 0.809 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.157 0.843 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.685 16.664 -17.529 30.563 hybrid contribution 0.572 -0.589 0.781 1.133 sum -18.113 16.075 -16.749 29.445 Atomic orbital electron populations 1.21870 0.92556 1.02401 1.02438 1.19600 0.96535 0.95430 0.91621 1.21983 1.01133 0.94341 1.02800 1.21920 1.00787 1.00521 0.96586 1.20254 0.96253 0.94079 0.96186 1.21227 1.00787 0.94689 0.97457 1.21433 0.96870 1.00713 0.94430 1.19173 1.01774 0.95219 0.95558 1.29154 1.19321 1.13662 1.05151 1.08587 0.78591 0.75673 0.78476 1.93487 1.86500 1.58737 1.58782 1.93487 1.60305 1.59037 1.84638 1.30078 1.07206 1.12862 1.20633 1.19360 0.92364 0.96024 0.97865 1.21221 1.06039 1.32453 0.96858 0.92797 1.25841 0.99631 0.94702 0.98304 1.69997 1.26240 1.35770 1.25836 0.86042 0.79807 0.78778 0.80706 1.18619 1.19728 1.17831 1.21465 0.99167 0.93949 0.98855 1.21468 0.98114 1.01429 0.93840 0.92711 0.90956 0.92281 0.92590 0.91034 0.91857 0.92337 0.90727 0.93483 0.84000 0.84326 0.80865 0.80880 0.83503 0.83532 0.95412 0.95513 0.92110 0.84310 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.29 71.98 0.60 -0.88 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.48 16 3 C -0.15 -1.66 7.13 71.98 0.51 -1.15 16 4 C -0.14 -1.86 8.29 71.98 0.60 -1.27 16 5 C -0.07 -1.25 4.76 -19.86 -0.09 -1.34 16 6 C -0.12 -2.43 8.71 22.27 0.19 -2.24 16 7 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 8 C -0.12 -2.70 5.14 -19.87 -0.10 -2.81 16 9 C -0.54 -10.92 5.93 71.24 0.42 -10.49 16 10 S 2.40 76.85 4.70 -56.49 -0.27 76.59 16 11 O -0.98 -37.88 18.10 -127.37 -2.31 -40.19 16 12 O -0.98 -37.73 18.10 -127.37 -2.30 -40.03 16 13 C -0.58 -20.00 5.74 71.98 0.41 -19.58 16 14 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 15 C -0.53 -30.01 9.66 25.60 0.25 -29.77 16 16 H 0.05 3.23 7.99 -2.91 -0.02 3.20 16 17 C 0.01 0.81 5.47 84.65 0.46 1.27 16 18 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 19 Si 0.92 44.98 27.47 68.60 1.88 46.86 16 20 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.25 -12.00 6.54 99.48 0.65 -11.35 16 23 C -0.12 -2.58 9.70 22.27 0.22 -2.37 16 24 C -0.13 -2.59 8.98 22.27 0.20 -2.39 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.63 7.39 -2.39 -0.02 0.62 16 28 H 0.06 0.70 7.52 -2.39 -0.02 0.68 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.68 7.51 -2.39 -0.02 0.66 16 31 H 0.06 0.77 7.39 -2.39 -0.02 0.75 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.14 2.17 7.10 -2.91 -0.02 2.15 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.17 2.37 8.08 -2.39 -0.02 2.35 16 37 H 0.17 2.37 8.09 -2.39 -0.02 2.35 16 38 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 39 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 40 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 41 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.15 2.27 5.90 -2.91 -0.02 2.25 16 Total: -1.00 -78.45 368.63 2.17 -76.28 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.90 Total: 14.83 kcal Atomic # 6 Polarization: -80.53 SS G_CDS: 3.96 Total: -76.57 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.30 Total: -57.76 kcal Atomic # 8 Polarization: -75.61 SS G_CDS: -4.61 Total: -80.22 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Atomic # 16 Polarization: 76.85 SS G_CDS: -0.27 Total: 76.59 kcal Total: -78.45 2.17 -76.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.711 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds