Wall clock time and date at job start Tue Mar 31 2020 10:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47519 * 2 1 4 4 O 1.42897 * 109.46992 * 119.99924 * 2 1 3 5 5 C 1.35900 * 117.00360 * 154.98731 * 4 2 1 6 6 C 1.38766 * 120.05099 * 5.49220 * 5 4 2 7 7 C 1.38122 * 119.94343 * 180.02562 * 6 5 4 8 8 C 1.38287 * 120.05133 * 359.97438 * 7 6 5 9 9 C 1.38238 * 120.11860 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05493 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.03316 * 179.97438 * 10 9 8 12 12 S 1.81398 * 109.47554 * 270.00585 * 11 10 9 13 13 O 1.42101 * 109.46770 * 296.38410 * 12 11 10 14 14 C 1.81398 * 103.00100 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46932 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47107 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47103 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00541 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00082 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99544 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00339 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47236 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47185 * 119.99818 * 21 19 17 24 24 H 1.48497 * 109.47207 * 240.00254 * 21 19 17 25 25 H 1.08995 * 109.46805 * 300.00777 * 1 2 3 26 26 H 1.09007 * 109.46944 * 59.99988 * 1 2 3 27 27 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46829 * 239.99680 * 2 1 3 29 29 H 1.09001 * 109.47371 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47022 * 299.99963 * 3 2 1 31 31 H 1.08998 * 109.47092 * 59.99396 * 3 2 1 32 32 H 1.07996 * 120.02752 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.97313 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.93963 * 179.74427 * 8 7 6 35 35 H 1.08003 * 119.97726 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.46764 * 30.00488 * 11 10 9 37 37 H 1.09000 * 109.47562 * 149.99584 * 11 10 9 38 38 H 1.09007 * 109.46858 * 299.99276 * 14 12 11 39 39 H 1.08996 * 109.47418 * 59.99712 * 14 12 11 40 40 H 1.09001 * 109.47451 * 299.99494 * 15 14 12 41 41 H 1.09001 * 109.47724 * 59.99539 * 15 14 12 42 42 H 1.08997 * 109.46849 * 299.99662 * 16 15 14 43 43 H 1.08996 * 109.47134 * 59.99800 * 16 15 14 44 44 H 0.97004 * 119.99504 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2465 -1.2250 1.0979 6 6 4.0353 -1.0233 -0.0259 7 6 5.2952 -1.5851 -0.0937 8 6 5.7709 -2.3477 0.9572 9 6 4.9872 -2.5502 2.0778 10 6 3.7257 -1.9912 2.1502 11 6 2.8715 -2.2128 3.3717 12 16 1.8658 -3.7051 3.1439 13 8 0.9719 -3.5123 2.0562 14 6 0.9240 -3.8027 4.6912 15 6 0.0108 -5.0298 4.6558 16 6 -0.7831 -5.1124 5.9611 17 6 -1.6830 -6.3207 5.9261 18 1 -1.6885 -6.9651 5.0593 19 6 -2.4994 -6.6037 7.0006 20 7 -2.4931 -5.8189 8.0559 21 14 -3.6154 -8.1010 6.9569 22 1 -3.4364 -8.8144 5.6668 23 1 -3.2669 -9.0110 8.0775 24 1 -5.0295 -7.6685 7.0919 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6640 -0.4281 -0.8470 33 1 5.9093 -1.4288 -0.9683 34 1 6.7548 -2.7897 0.9004 35 1 5.3608 -3.1466 2.8971 36 1 3.5118 -2.3360 4.2453 37 1 2.2179 -1.3530 3.5189 38 1 1.6133 -3.8864 5.5314 39 1 0.3191 -2.9032 4.8057 40 1 -0.6785 -4.9457 3.8157 41 1 0.6153 -5.9295 4.5411 42 1 -0.0935 -5.1968 6.8010 43 1 -1.3876 -4.2128 6.0763 44 1 -3.0671 -6.0182 8.8119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078717951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:43 Heat of formation + Delta-G solvation = -73.823693 kcal Electronic energy + Delta-G solvation = -23026.331539 eV Core-core repulsion = 19649.014881 eV Total energy + Delta-G solvation = -3377.316658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49467 -37.87384 -35.26003 -34.37157 -33.66996 -32.52427 -31.97852 -30.07974 -27.63419 -27.48263 -26.87821 -23.57832 -23.38838 -21.72947 -20.90779 -20.19396 -18.31936 -17.18484 -16.29098 -16.25465 -15.90290 -15.70380 -15.06539 -14.82636 -14.72006 -14.36046 -14.29618 -14.01872 -13.54704 -13.16169 -13.09182 -12.88250 -12.53849 -12.45873 -12.34345 -12.10581 -11.97434 -11.86215 -11.57452 -11.37311 -11.27208 -10.92339 -10.85342 -10.79037 -10.71663 -10.61718 -10.15140 -9.74647 -9.42094 -9.09837 -8.79826 -8.33717 -8.24658 -7.75089 -5.98487 -4.00775 1.03635 1.29163 1.96987 2.97773 3.07969 3.32749 3.40041 3.45032 3.65290 4.12510 4.48106 4.50139 4.58129 4.63688 4.69343 4.83017 4.90186 5.04528 5.12399 5.28443 5.35275 5.37263 5.39445 5.45732 5.56192 5.57523 5.58938 5.68277 5.69967 5.84907 5.97854 6.03165 6.19165 6.26600 6.27462 6.36406 6.57669 6.66202 6.76757 7.09613 7.35302 7.69273 7.82278 8.01586 8.43730 9.06567 9.63289 11.12859 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.002798 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.229295 B =10006.021200 C =10836.972470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.180 4.180 4 O -0.299 6.299 5 C 0.141 3.859 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.079 4.079 10 C -0.094 4.094 11 C -0.405 4.405 12 S 1.228 4.772 13 O -0.836 6.836 14 C -0.435 4.435 15 C -0.092 4.092 16 C 0.026 3.974 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.573 11.505 -15.852 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.237 4.237 4 O -0.212 6.212 5 C 0.094 3.906 6 C -0.230 4.230 7 C -0.104 4.104 8 C -0.176 4.176 9 C -0.098 4.098 10 C -0.096 4.096 11 C -0.539 4.539 12 S 1.429 4.571 13 O -0.831 6.831 14 C -0.574 4.574 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.291 10.958 -16.315 26.848 hybrid contribution -1.900 1.293 0.314 2.319 sum 16.391 12.251 -16.001 25.977 Atomic orbital electron populations 1.21852 0.92299 1.03944 1.02642 1.22418 0.95761 0.92116 0.87417 1.22404 1.01915 0.96235 1.03145 1.86189 1.29036 1.67590 1.38401 1.18881 0.84823 0.92777 0.94130 1.21256 0.96494 1.06576 0.98689 1.20920 0.94800 0.96255 0.98444 1.21014 1.00568 1.01690 0.94375 1.20946 0.92147 0.98300 0.98450 1.18542 0.95627 1.00949 0.94479 1.26596 1.08594 1.18528 1.00197 1.70567 1.00842 1.01330 0.84386 1.93111 1.65716 1.81145 1.43151 1.27695 1.09359 1.05274 1.15058 1.21293 0.96782 0.92943 1.02077 1.19100 0.94402 0.96942 0.90756 1.21328 1.22469 1.10134 1.01959 0.92495 1.25037 0.97178 0.96783 0.95548 1.69982 1.39614 1.37872 1.06139 0.86530 0.80515 0.82913 0.78038 1.19645 1.20962 1.21068 0.91617 0.90722 0.90907 0.91004 0.91959 0.91037 0.91452 0.85464 0.85992 0.85707 0.84547 0.85976 0.88524 0.87062 0.90213 0.92903 0.92222 0.96271 0.96789 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.56 37.16 0.36 -1.31 16 2 C 0.08 0.89 2.84 -26.73 -0.08 0.82 16 3 C -0.18 -1.58 9.17 37.16 0.34 -1.24 16 4 O -0.30 -4.37 8.84 -19.43 -0.17 -4.54 16 5 C 0.14 1.89 6.57 -39.21 -0.26 1.63 16 6 C -0.21 -2.32 8.25 -39.43 -0.33 -2.65 16 7 C -0.09 -0.79 10.04 -39.61 -0.40 -1.19 16 8 C -0.16 -1.39 10.04 -39.56 -0.40 -1.79 16 9 C -0.08 -0.76 9.70 -39.61 -0.38 -1.14 16 10 C -0.09 -1.16 5.15 -104.48 -0.54 -1.70 16 11 C -0.41 -4.91 5.83 36.00 0.21 -4.70 16 12 S 1.23 17.30 13.14 -107.50 -1.41 15.88 16 13 O -0.84 -16.81 18.14 -35.23 -0.64 -17.45 16 14 C -0.44 -7.28 5.92 37.16 0.22 -7.06 16 15 C -0.09 -1.95 5.16 -26.73 -0.14 -2.09 16 16 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 29 H 0.06 0.53 6.91 -51.93 -0.36 0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.13 1.18 5.43 -52.49 -0.29 0.89 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 1.06 8.09 -51.92 -0.42 0.64 16 37 H 0.10 1.35 7.53 -51.92 -0.39 0.96 16 38 H 0.11 1.56 8.14 -51.92 -0.42 1.14 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -37.37 376.12 -10.02 -47.39 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.24 Total: -1.56 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: -1.94 Total: -35.74 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.81 Total: -21.99 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 17.30 SS G_CDS: -1.41 Total: 15.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.37 -10.02 -47.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078717951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.434 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds