Wall clock time and date at job start Tue Mar 31 2020 10:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47519 * 2 1 4 4 O 1.42897 * 109.46992 * 119.99924 * 2 1 3 5 5 C 1.35900 * 117.00360 * 154.98731 * 4 2 1 6 6 C 1.38766 * 120.05099 * 5.49220 * 5 4 2 7 7 C 1.38122 * 119.94343 * 180.02562 * 6 5 4 8 8 C 1.38287 * 120.05133 * 359.97438 * 7 6 5 9 9 C 1.38238 * 120.11860 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05493 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.03316 * 179.97438 * 10 9 8 12 12 S 1.81398 * 109.47554 * 270.00585 * 11 10 9 13 13 O 1.42101 * 109.46770 * 296.38410 * 12 11 10 14 14 C 1.81398 * 103.00100 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46932 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47107 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47103 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00541 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00082 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99544 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00339 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47236 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47185 * 119.99818 * 21 19 17 24 24 H 1.48497 * 109.47207 * 240.00254 * 21 19 17 25 25 H 1.08995 * 109.46805 * 300.00777 * 1 2 3 26 26 H 1.09007 * 109.46944 * 59.99988 * 1 2 3 27 27 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46829 * 239.99680 * 2 1 3 29 29 H 1.09001 * 109.47371 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47022 * 299.99963 * 3 2 1 31 31 H 1.08998 * 109.47092 * 59.99396 * 3 2 1 32 32 H 1.07996 * 120.02752 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.97313 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.93963 * 179.74427 * 8 7 6 35 35 H 1.08003 * 119.97726 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.46764 * 30.00488 * 11 10 9 37 37 H 1.09000 * 109.47562 * 149.99584 * 11 10 9 38 38 H 1.09007 * 109.46858 * 299.99276 * 14 12 11 39 39 H 1.08996 * 109.47418 * 59.99712 * 14 12 11 40 40 H 1.09001 * 109.47451 * 299.99494 * 15 14 12 41 41 H 1.09001 * 109.47724 * 59.99539 * 15 14 12 42 42 H 1.08997 * 109.46849 * 299.99662 * 16 15 14 43 43 H 1.08996 * 109.47134 * 59.99800 * 16 15 14 44 44 H 0.97004 * 119.99504 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2465 -1.2250 1.0979 6 6 4.0353 -1.0233 -0.0259 7 6 5.2952 -1.5851 -0.0937 8 6 5.7709 -2.3477 0.9572 9 6 4.9872 -2.5502 2.0778 10 6 3.7257 -1.9912 2.1502 11 6 2.8715 -2.2128 3.3717 12 16 1.8658 -3.7051 3.1439 13 8 0.9719 -3.5123 2.0562 14 6 0.9240 -3.8027 4.6912 15 6 0.0108 -5.0298 4.6558 16 6 -0.7831 -5.1124 5.9611 17 6 -1.6830 -6.3207 5.9261 18 1 -1.6885 -6.9651 5.0593 19 6 -2.4994 -6.6037 7.0006 20 7 -2.4931 -5.8189 8.0559 21 14 -3.6154 -8.1010 6.9569 22 1 -3.4364 -8.8144 5.6668 23 1 -3.2669 -9.0110 8.0775 24 1 -5.0295 -7.6685 7.0919 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6640 -0.4281 -0.8470 33 1 5.9093 -1.4288 -0.9683 34 1 6.7548 -2.7897 0.9004 35 1 5.3608 -3.1466 2.8971 36 1 3.5118 -2.3360 4.2453 37 1 2.2179 -1.3530 3.5189 38 1 1.6133 -3.8864 5.5314 39 1 0.3191 -2.9032 4.8057 40 1 -0.6785 -4.9457 3.8157 41 1 0.6153 -5.9295 4.5411 42 1 -0.0935 -5.1968 6.8010 43 1 -1.3876 -4.2128 6.0763 44 1 -3.0671 -6.0182 8.8119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078717951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:43 Heat of formation + Delta-G solvation = -97.913301 kcal Electronic energy + Delta-G solvation = -23027.376143 eV Core-core repulsion = 19649.014881 eV Total energy + Delta-G solvation = -3378.361262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32571 -38.67853 -36.69834 -36.30574 -34.49810 -34.02668 -33.37102 -30.84699 -29.46332 -28.31546 -27.87823 -25.36342 -24.34864 -22.68560 -21.96024 -21.67866 -19.18190 -18.65321 -18.20091 -17.13215 -16.77413 -16.69677 -16.50835 -16.26413 -16.00208 -15.59570 -15.35486 -15.09240 -14.48843 -14.42583 -14.28821 -13.99180 -13.83184 -13.70467 -13.33635 -13.32888 -13.19971 -12.94734 -12.83798 -12.72158 -12.54189 -12.45292 -12.30951 -12.11690 -11.82761 -11.73724 -11.61700 -11.58326 -11.30592 -10.91781 -10.58221 -9.75911 -9.27665 -8.85280 -8.22185 -6.33818 0.16871 0.51265 0.90141 1.38725 1.39464 1.53303 1.81477 2.26376 2.39942 2.85300 2.96672 3.10530 3.68022 3.73708 3.84142 3.90265 4.02450 4.06322 4.18512 4.19405 4.26485 4.41333 4.53894 4.60833 4.62613 4.64446 4.69363 4.72631 4.74718 4.85203 4.97279 5.06176 5.13284 5.14100 5.16454 5.18509 5.43474 5.48508 5.52878 5.63757 5.68404 5.82025 5.96739 6.21936 6.51152 6.82910 7.35557 8.89744 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.002798 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.229295 B =10006.021200 C =10836.972470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 C -0.170 4.170 4 O -0.333 6.333 5 C 0.107 3.893 6 C -0.223 4.223 7 C -0.085 4.085 8 C -0.157 4.157 9 C -0.075 4.075 10 C -0.126 4.126 11 C -0.393 4.393 12 S 1.290 4.710 13 O -0.901 6.901 14 C -0.440 4.440 15 C -0.086 4.086 16 C 0.028 3.972 17 C -0.547 4.547 18 H 0.060 0.940 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.281 1.281 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.085 0.915 42 H 0.009 0.991 43 H -0.022 1.022 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.274 10.761 -16.761 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.227 4.227 4 O -0.247 6.247 5 C 0.060 3.940 6 C -0.242 4.242 7 C -0.104 4.104 8 C -0.175 4.175 9 C -0.094 4.094 10 C -0.128 4.128 11 C -0.529 4.529 12 S 1.492 4.508 13 O -0.896 6.896 14 C -0.577 4.577 15 C -0.125 4.125 16 C -0.011 4.011 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.207 1.207 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.027 0.973 43 H -0.004 1.004 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.971 10.190 -17.221 28.986 hybrid contribution -2.596 1.624 0.555 3.112 sum 18.374 11.814 -16.666 27.476 Atomic orbital electron populations 1.21877 0.92849 1.02151 1.03695 1.22626 0.95462 0.93481 0.86979 1.22325 1.01979 0.94536 1.03840 1.86138 1.30225 1.68434 1.39923 1.19341 0.84876 0.94081 0.95664 1.21478 0.97203 1.07147 0.98356 1.21358 0.94183 0.95202 0.99617 1.21481 1.01711 1.00739 0.93570 1.21410 0.90796 0.97432 0.99787 1.18801 0.97036 1.02586 0.94347 1.26467 1.08315 1.15630 1.02475 1.69712 0.98029 1.02122 0.80938 1.92998 1.67098 1.83599 1.45954 1.27729 1.09333 1.02020 1.18613 1.21100 0.96976 0.96363 0.98054 1.19022 0.94157 0.94661 0.93225 1.21775 1.23402 1.11041 1.02296 0.92183 1.26015 0.98752 1.00148 0.95016 1.70107 1.40569 1.39806 1.06912 0.85376 0.78001 0.78847 0.78708 1.18589 1.19649 1.20690 0.92600 0.87601 0.94014 0.90429 0.91696 0.88589 0.92399 0.84553 0.83224 0.82413 0.81045 0.81765 0.90856 0.83839 0.92501 0.95315 0.89601 0.97260 1.00405 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.56 71.98 0.69 -2.82 16 2 C 0.07 1.63 2.84 30.59 0.09 1.72 16 3 C -0.17 -2.91 9.17 71.98 0.66 -2.25 16 4 O -0.33 -10.20 8.84 -92.42 -0.82 -11.01 16 5 C 0.11 2.85 6.57 22.51 0.15 3.00 16 6 C -0.22 -4.65 8.25 22.37 0.18 -4.46 16 7 C -0.09 -1.33 10.04 22.25 0.22 -1.10 16 8 C -0.16 -2.15 10.04 22.28 0.22 -1.93 16 9 C -0.08 -1.19 9.70 22.25 0.22 -0.97 16 10 C -0.13 -2.93 5.15 -19.77 -0.10 -3.04 16 11 C -0.39 -9.12 5.83 71.24 0.42 -8.70 16 12 S 1.29 36.08 13.14 -56.49 -0.74 35.34 16 13 O -0.90 -37.75 18.14 -148.98 -2.70 -40.45 16 14 C -0.44 -14.90 5.92 71.98 0.43 -14.47 16 15 C -0.09 -3.75 5.16 30.60 0.16 -3.59 16 16 C 0.03 1.52 4.97 29.85 0.15 1.66 16 17 C -0.55 -32.38 9.11 25.60 0.23 -32.14 16 18 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 20 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 21 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.64 6.31 -2.38 -0.02 1.63 16 29 H 0.06 1.07 6.91 -2.39 -0.02 1.05 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 2.40 5.43 -2.91 -0.02 2.39 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.16 2.32 8.09 -2.39 -0.02 2.30 16 37 H 0.07 2.10 7.53 -2.39 -0.02 2.08 16 38 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -85.91 376.12 3.18 -82.73 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.96 Total: 12.55 kcal Atomic # 6 Polarization: -72.89 SS G_CDS: 4.17 Total: -68.72 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.28 Total: -57.78 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -3.52 Total: -51.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 36.08 SS G_CDS: -0.74 Total: 35.34 kcal Total: -85.91 3.18 -82.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078717951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.186 kcal (2) G-P(sol) polarization free energy of solvation -85.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds