Wall clock time and date at job start Tue Mar 31 2020 10:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99943 * 2 1 4 4 O 1.20825 * 119.99669 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47376 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.46688 * 55.00584 * 6 5 3 8 8 C 1.53000 * 109.47509 * 175.00134 * 6 5 3 9 9 N 1.46494 * 109.47415 * 295.00552 * 6 5 3 10 10 C 1.34780 * 120.00332 * 154.99503 * 9 6 5 11 11 O 1.21596 * 119.99507 * 0.02562 * 10 9 6 12 12 N 1.34768 * 120.00292 * 180.02562 * 10 9 6 13 13 C 1.40201 * 120.00142 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97176 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86896 * 179.97438 * 14 13 12 16 16 N 1.34962 * 107.85356 * 0.22585 * 15 14 13 17 17 C 1.46501 * 125.97082 * 179.76577 * 16 15 14 18 18 C 1.50703 * 109.46706 * 125.00181 * 17 16 15 19 19 H 1.07992 * 120.00189 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99825 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 90.00298 * 22 20 18 24 24 H 1.48497 * 109.47275 * 210.00193 * 22 20 18 25 25 H 1.48501 * 109.47082 * 330.00431 * 22 20 18 26 26 N 1.31202 * 125.97171 * 179.97438 * 13 12 10 27 27 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47197 * 299.99608 * 1 2 3 29 29 H 1.08997 * 109.47732 * 59.99554 * 1 2 3 30 30 H 1.09008 * 109.46900 * 60.00581 * 5 3 2 31 31 H 1.09000 * 109.47459 * 300.00523 * 5 3 2 32 32 H 1.08992 * 109.47286 * 180.02562 * 8 6 5 33 33 H 1.09007 * 109.46819 * 300.00795 * 8 6 5 34 34 H 1.08998 * 109.46592 * 59.99888 * 8 6 5 35 35 H 0.96998 * 120.00015 * 334.99528 * 9 6 5 36 36 H 0.96998 * 120.00056 * 359.97438 * 12 10 9 37 37 H 1.08003 * 126.06768 * 359.93842 * 14 13 12 38 38 H 1.08002 * 126.06857 * 179.97438 * 15 14 13 39 39 H 1.09000 * 109.47836 * 245.00121 * 17 16 15 40 40 H 1.08997 * 109.47518 * 5.00660 * 17 16 15 41 41 H 0.96995 * 120.00331 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5382 3.2579 0.8409 8 6 5.5228 2.8239 0.1240 9 7 3.5782 3.3757 -1.2528 10 6 3.3813 4.7082 -1.3007 11 8 3.5543 5.3845 -0.3051 12 7 2.9927 5.2910 -2.4521 13 6 2.7884 6.6771 -2.5021 14 6 2.9504 7.5737 -1.4338 15 6 2.6593 8.8146 -1.8858 16 7 2.3204 8.7118 -3.1881 17 6 1.9275 9.8177 -4.0650 18 6 2.8117 9.8297 -5.2853 19 1 3.5883 9.0876 -5.3967 20 6 2.6284 10.7875 -6.2600 21 7 1.6824 11.6910 -6.1246 22 14 3.7249 10.8029 -7.7722 23 1 3.1157 9.9622 -8.8340 24 1 3.8685 12.1962 -8.2655 25 1 5.0623 10.2624 -7.4194 26 7 2.4124 7.3632 -3.5553 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.9556 0.7811 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 5.8317 3.8691 0.1241 33 1 5.8366 2.3524 1.0554 34 1 5.9846 2.3082 -0.7179 35 1 3.4406 2.8363 -2.0471 36 1 2.8551 4.7515 -3.2464 37 1 3.2532 7.3177 -0.4292 38 1 2.6885 9.7255 -1.3062 39 1 0.8890 9.6883 -4.3700 40 1 2.0340 10.7612 -3.5298 41 1 1.5537 12.3650 -6.8101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085600954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:47 Heat of formation + Delta-G solvation = -30.388210 kcal Electronic energy + Delta-G solvation = -25025.938258 eV Core-core repulsion = 21136.504641 eV Total energy + Delta-G solvation = -3889.433617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97735 -40.53367 -39.50048 -37.14897 -35.96145 -34.51684 -33.33980 -31.95450 -30.55927 -29.32755 -29.13471 -27.33508 -26.55578 -23.53346 -22.60196 -21.62026 -20.76062 -20.35138 -19.69401 -18.05128 -17.91977 -17.10646 -16.83170 -16.57086 -16.48937 -15.88727 -15.30679 -14.89321 -14.41861 -14.20857 -14.13517 -13.83933 -13.73265 -13.40741 -12.86272 -12.71356 -12.51582 -12.38696 -12.27739 -12.18342 -12.13982 -11.71718 -11.37638 -11.13818 -10.99788 -10.86194 -10.76843 -10.34331 -10.21914 -9.98488 -9.59916 -9.43342 -9.19897 -8.59730 -8.01793 -7.32978 -6.20532 -4.25329 1.88507 2.32303 2.45228 2.76541 3.21931 3.25982 3.31541 3.36908 3.66373 3.93752 4.14726 4.30184 4.38686 4.43624 4.66825 4.76511 4.85322 4.92615 5.07238 5.14404 5.16800 5.20588 5.41070 5.57206 5.73936 5.89270 5.98102 6.05124 6.30410 6.39764 6.62361 6.66315 6.94454 7.07161 7.17182 7.42048 7.58888 7.74034 7.88391 8.06023 8.13878 8.71393 8.73822 8.86155 9.39958 10.88144 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.002509 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.339365 B =11157.086705 C =11361.773613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.450 3.550 4 O -0.486 6.486 5 C -0.123 4.123 6 C 0.174 3.826 7 H 0.101 0.899 8 C -0.165 4.165 9 N -0.736 5.736 10 C 0.721 3.279 11 O -0.567 6.567 12 N -0.644 5.644 13 C 0.278 3.722 14 C -0.285 4.285 15 C 0.050 3.950 16 N -0.322 5.322 17 C 0.259 3.741 18 C -0.527 4.527 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.309 5.309 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.393 0.607 36 H 0.405 0.595 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -24.363 13.031 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.371 6.371 5 C -0.161 4.161 6 C 0.068 3.932 7 H 0.119 0.881 8 C -0.223 4.223 9 N -0.392 5.392 10 C 0.420 3.580 11 O -0.442 6.442 12 N -0.294 5.294 13 C 0.024 3.976 14 C -0.317 4.317 15 C -0.100 4.100 16 N -0.104 5.104 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.141 5.141 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.239 0.761 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.594 -23.220 12.574 26.533 hybrid contribution 0.290 -0.373 -0.909 1.024 sum 2.884 -23.592 11.665 26.476 Atomic orbital electron populations 1.23266 0.76116 1.03626 1.02796 1.86487 1.23628 1.33633 1.84409 1.23757 0.92201 0.81549 0.73297 1.90794 1.66881 1.35991 1.43452 1.21816 0.88133 0.99134 1.06993 1.20587 0.95057 0.89546 0.87999 0.88142 1.22219 0.94147 1.03872 1.02081 1.44944 1.74724 1.06080 1.13419 1.15493 0.77779 0.81767 0.82928 1.90849 1.57438 1.61877 1.34014 1.41363 1.70689 1.04861 1.12453 1.18781 1.01930 0.83158 0.93767 1.21511 1.18316 0.90346 1.01491 1.22545 1.01267 0.99478 0.86717 1.49030 1.48540 1.04984 1.07827 1.19716 0.97111 0.80168 0.88880 1.21271 1.17306 1.14394 1.03528 0.91317 1.24950 0.95667 0.94962 0.98569 1.69918 1.31758 1.16599 1.35171 0.86328 0.80703 0.77229 0.82228 1.20382 1.21009 1.19735 1.77309 1.27394 0.89276 1.20077 0.88136 0.91837 0.91770 0.87031 0.85936 0.90882 0.91330 0.92170 0.77380 0.76068 0.82191 0.81586 0.93814 0.92572 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -2.89 10.57 -39.27 -0.41 -3.30 16 3 C 0.45 3.98 7.82 36.00 0.28 4.26 16 4 O -0.49 -6.31 15.10 -18.75 -0.28 -6.59 16 5 C -0.12 -0.65 5.35 -27.88 -0.15 -0.80 16 6 C 0.17 1.49 2.14 -67.93 -0.15 1.34 16 7 H 0.10 1.14 7.39 -51.93 -0.38 0.76 16 8 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 9 N -0.74 -7.79 4.22 -58.68 -0.25 -8.04 16 10 C 0.72 11.28 8.50 -86.92 -0.74 10.54 16 11 O -0.57 -10.69 13.13 5.28 0.07 -10.62 16 12 N -0.64 -10.74 5.45 -15.51 -0.08 -10.82 16 13 C 0.28 5.90 8.11 -154.36 -1.25 4.64 16 14 C -0.29 -6.00 9.61 -39.84 -0.38 -6.38 16 15 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 16 N -0.32 -7.77 3.67 -62.56 -0.23 -8.00 16 17 C 0.26 6.76 6.26 -5.19 -0.03 6.72 16 18 C -0.53 -14.93 9.23 -34.44 -0.32 -15.25 16 19 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 22 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 26 N -0.31 -7.41 12.42 31.44 0.39 -7.02 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.39 3.09 8.62 -40.82 -0.35 2.74 16 36 H 0.41 5.55 8.84 -40.82 -0.36 5.19 16 37 H 0.16 3.31 5.91 -52.48 -0.31 3.00 16 38 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 39 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -36.54 358.93 -6.88 -43.42 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.60 Total: 5.93 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -1.61 Total: 8.01 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.56 Total: -58.88 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.63 Total: -20.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.54 -6.88 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.033 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds