Wall clock time and date at job start Tue Mar 31 2020 10:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99943 * 2 1 4 4 O 1.20825 * 119.99669 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47376 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.46688 * 55.00584 * 6 5 3 8 8 C 1.53000 * 109.47509 * 175.00134 * 6 5 3 9 9 N 1.46494 * 109.47415 * 295.00552 * 6 5 3 10 10 C 1.34780 * 120.00332 * 154.99503 * 9 6 5 11 11 O 1.21596 * 119.99507 * 0.02562 * 10 9 6 12 12 N 1.34768 * 120.00292 * 180.02562 * 10 9 6 13 13 C 1.40201 * 120.00142 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97176 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86896 * 179.97438 * 14 13 12 16 16 N 1.34962 * 107.85356 * 0.22585 * 15 14 13 17 17 C 1.46501 * 125.97082 * 179.76577 * 16 15 14 18 18 C 1.50703 * 109.46706 * 125.00181 * 17 16 15 19 19 H 1.07992 * 120.00189 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99721 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99825 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 90.00298 * 22 20 18 24 24 H 1.48497 * 109.47275 * 210.00193 * 22 20 18 25 25 H 1.48501 * 109.47082 * 330.00431 * 22 20 18 26 26 N 1.31202 * 125.97171 * 179.97438 * 13 12 10 27 27 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47197 * 299.99608 * 1 2 3 29 29 H 1.08997 * 109.47732 * 59.99554 * 1 2 3 30 30 H 1.09008 * 109.46900 * 60.00581 * 5 3 2 31 31 H 1.09000 * 109.47459 * 300.00523 * 5 3 2 32 32 H 1.08992 * 109.47286 * 180.02562 * 8 6 5 33 33 H 1.09007 * 109.46819 * 300.00795 * 8 6 5 34 34 H 1.08998 * 109.46592 * 59.99888 * 8 6 5 35 35 H 0.96998 * 120.00015 * 334.99528 * 9 6 5 36 36 H 0.96998 * 120.00056 * 359.97438 * 12 10 9 37 37 H 1.08003 * 126.06768 * 359.93842 * 14 13 12 38 38 H 1.08002 * 126.06857 * 179.97438 * 15 14 13 39 39 H 1.09000 * 109.47836 * 245.00121 * 17 16 15 40 40 H 1.08997 * 109.47518 * 5.00660 * 17 16 15 41 41 H 0.96995 * 120.00331 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5382 3.2579 0.8409 8 6 5.5228 2.8239 0.1240 9 7 3.5782 3.3757 -1.2528 10 6 3.3813 4.7082 -1.3007 11 8 3.5543 5.3845 -0.3051 12 7 2.9927 5.2910 -2.4521 13 6 2.7884 6.6771 -2.5021 14 6 2.9504 7.5737 -1.4338 15 6 2.6593 8.8146 -1.8858 16 7 2.3204 8.7118 -3.1881 17 6 1.9275 9.8177 -4.0650 18 6 2.8117 9.8297 -5.2853 19 1 3.5883 9.0876 -5.3967 20 6 2.6284 10.7875 -6.2600 21 7 1.6824 11.6910 -6.1246 22 14 3.7249 10.8029 -7.7722 23 1 3.1157 9.9622 -8.8340 24 1 3.8685 12.1962 -8.2655 25 1 5.0623 10.2624 -7.4194 26 7 2.4124 7.3632 -3.5553 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.9556 0.7811 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 5.8317 3.8691 0.1241 33 1 5.8366 2.3524 1.0554 34 1 5.9846 2.3082 -0.7179 35 1 3.4406 2.8363 -2.0471 36 1 2.8551 4.7515 -3.2464 37 1 3.2532 7.3177 -0.4292 38 1 2.6885 9.7255 -1.3062 39 1 0.8890 9.6883 -4.3700 40 1 2.0340 10.7612 -3.5298 41 1 1.5537 12.3650 -6.8101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085600954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:46 Heat of formation + Delta-G solvation = -56.075129 kcal Electronic energy + Delta-G solvation = -25027.052126 eV Core-core repulsion = 21136.504641 eV Total energy + Delta-G solvation = -3890.547486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23470 -41.60489 -40.77441 -37.92242 -36.86650 -36.04310 -35.27252 -33.23951 -32.05865 -30.91294 -29.88661 -28.49889 -27.85116 -25.19841 -23.88541 -22.69239 -21.97788 -21.53042 -21.14911 -19.28313 -18.69063 -18.59292 -18.23790 -17.68502 -17.48951 -17.10018 -16.69286 -16.46273 -15.89749 -15.65092 -15.43389 -14.80209 -14.55922 -14.41240 -14.25800 -14.04062 -13.80053 -13.71730 -13.43841 -13.04760 -12.94032 -12.91747 -12.79678 -12.73042 -12.29184 -12.10054 -11.94982 -11.78264 -11.62652 -11.50523 -11.38191 -11.08021 -10.72213 -10.19693 -9.72023 -9.04429 -8.32516 -6.46941 1.08098 1.17000 1.22965 1.38096 1.39036 1.50748 1.73391 1.77572 2.13140 2.36461 2.45469 2.98720 3.16673 3.55455 3.83261 3.97826 4.19579 4.27990 4.29735 4.31824 4.39186 4.59407 4.70279 4.72265 4.77176 4.84657 4.88937 4.95344 5.00809 5.08476 5.17879 5.39182 5.45003 5.55093 5.58076 5.77135 5.89418 5.98519 6.29834 6.63974 6.76324 6.78379 7.16187 7.22883 7.48783 8.75064 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.002509 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.339365 B =11157.086705 C =11361.773613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.450 3.550 4 O -0.537 6.537 5 C -0.110 4.110 6 C 0.168 3.832 7 H 0.068 0.932 8 C -0.157 4.157 9 N -0.716 5.716 10 C 0.716 3.284 11 O -0.601 6.601 12 N -0.639 5.639 13 C 0.285 3.715 14 C -0.293 4.293 15 C 0.056 3.944 16 N -0.346 5.346 17 C 0.273 3.727 18 C -0.547 4.547 19 H 0.052 0.948 20 C 0.017 3.983 21 N -0.921 5.921 22 Si 0.973 3.027 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 N -0.349 5.349 27 H 0.131 0.869 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.038 0.962 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.418 0.582 37 H 0.165 0.835 38 H 0.201 0.799 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -26.684 12.995 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.294 3.706 4 O -0.426 6.426 5 C -0.147 4.147 6 C 0.064 3.936 7 H 0.086 0.914 8 C -0.215 4.215 9 N -0.372 5.372 10 C 0.415 3.585 11 O -0.479 6.479 12 N -0.291 5.291 13 C 0.029 3.971 14 C -0.324 4.324 15 C -0.092 4.092 16 N -0.128 5.128 17 C 0.154 3.846 18 C -0.585 4.585 19 H 0.071 0.929 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.797 3.203 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.197 1.197 26 N -0.180 5.180 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.255 0.745 37 H 0.182 0.818 38 H 0.218 0.782 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.113 -25.634 12.545 28.834 hybrid contribution -0.210 0.206 -0.774 0.827 sum 3.903 -25.428 11.771 28.291 Atomic orbital electron populations 1.23447 0.75496 1.05413 1.01996 1.86494 1.24325 1.33086 1.83923 1.24474 0.93492 0.80987 0.71623 1.90790 1.68206 1.37570 1.46031 1.21896 0.85569 0.96911 1.10338 1.20769 0.95990 0.91137 0.85727 0.91397 1.22151 0.92664 1.02226 1.04486 1.44914 1.73017 1.04210 1.15023 1.15740 0.77540 0.83192 0.81987 1.90813 1.58921 1.63157 1.35032 1.41407 1.70680 1.03322 1.13645 1.19102 0.99902 0.84988 0.93067 1.21674 1.18608 0.90493 1.01668 1.23146 0.99451 1.00948 0.85690 1.48820 1.50488 1.04830 1.08640 1.19335 0.95457 0.81008 0.88805 1.21401 1.17573 1.14507 1.05023 0.92946 1.25767 0.96904 0.94329 1.01309 1.69996 1.32767 1.16984 1.36271 0.85322 0.78659 0.77829 0.78445 1.19766 1.19622 1.19686 1.77229 1.29602 0.89540 1.21606 0.85061 0.92605 0.92693 0.83521 0.82370 0.94308 0.88656 0.90051 0.75507 0.74503 0.81760 0.78178 0.96196 0.92345 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -4.99 10.57 -51.45 -0.54 -5.53 16 3 C 0.45 7.19 7.82 71.23 0.56 7.74 16 4 O -0.54 -13.90 15.10 21.97 0.33 -13.57 16 5 C -0.11 -0.79 5.35 29.85 0.16 -0.63 16 6 C 0.17 2.60 2.14 44.99 0.10 2.69 16 7 H 0.07 1.54 7.39 -2.38 -0.02 1.53 16 8 C -0.16 -1.87 9.48 71.98 0.68 -1.19 16 9 N -0.72 -14.30 4.22 -457.81 -1.93 -16.24 16 10 C 0.72 22.36 8.50 179.06 1.52 23.88 16 11 O -0.60 -23.06 13.13 -4.02 -0.05 -23.12 16 12 N -0.64 -21.35 5.45 -321.24 -1.75 -23.10 16 13 C 0.29 12.27 8.11 133.31 1.08 13.36 16 14 C -0.29 -12.44 9.61 22.10 0.21 -12.23 16 15 C 0.06 2.36 11.44 83.52 0.96 3.32 16 16 N -0.35 -17.06 3.67 -351.84 -1.29 -18.35 16 17 C 0.27 14.64 6.26 85.63 0.54 15.18 16 18 C -0.55 -31.60 9.23 25.60 0.24 -31.37 16 19 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 20 C 0.02 0.96 5.46 84.66 0.46 1.43 16 21 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 22 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 N -0.35 -17.09 12.42 -54.44 -0.68 -17.77 16 27 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 29 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.15 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.41 5.59 8.62 -92.71 -0.80 4.79 16 36 H 0.42 11.33 8.84 -92.71 -0.82 10.51 16 37 H 0.17 6.87 5.91 -2.91 -0.02 6.85 16 38 H 0.20 6.70 8.06 -2.91 -0.02 6.68 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 3.06 8.07 -2.39 -0.02 3.04 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -82.10 358.93 3.55 -78.56 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.54 Total: 21.95 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.70 Total: 23.73 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -5.37 Total: -128.30 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.26 Total: -42.21 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -82.10 3.55 -78.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.480 kcal (2) G-P(sol) polarization free energy of solvation -82.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds