Wall clock time and date at job start Tue Mar 31 2020 09:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90005 * 2 1 4 4 N 1.40085 * 108.20279 * 179.97438 * 3 2 1 5 5 C 1.46507 * 126.03394 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46925 * 90.01945 * 5 4 3 7 7 C 1.50709 * 109.46716 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99688 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99796 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99943 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.47078 * 34.99474 * 10 9 7 12 12 C 1.53000 * 109.47021 * 275.00054 * 10 9 7 13 13 C 1.50694 * 109.47115 * 154.99835 * 10 9 7 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.34946 * 107.92919 * 0.25841 * 4 3 2 22 22 C 1.50690 * 126.12906 * 179.73854 * 21 4 3 23 23 C 1.35317 * 107.74119 * 359.58374 * 21 4 3 24 24 N 1.48028 * 126.03883 * 180.16439 * 23 21 4 25 25 O 1.21802 * 119.99428 * 270.32919 * 24 23 21 26 26 O 1.21799 * 120.00017 * 90.32426 * 24 23 21 27 27 H 1.08995 * 109.47351 * 90.02325 * 1 2 3 28 28 H 1.08999 * 109.47435 * 210.02779 * 1 2 3 29 29 H 1.09003 * 109.47113 * 330.02482 * 1 2 3 30 30 H 1.09000 * 109.47091 * 330.01890 * 5 4 3 31 31 H 1.09000 * 109.46893 * 210.01836 * 5 4 3 32 32 H 1.08998 * 109.46869 * 60.00396 * 6 5 4 33 33 H 1.08995 * 109.47564 * 299.99996 * 6 5 4 34 34 H 0.96997 * 119.99849 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47131 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47106 * 299.99878 * 12 10 9 37 37 H 1.08998 * 109.47089 * 59.99825 * 12 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47671 * 90.00075 * 22 21 4 40 40 H 1.08997 * 109.47472 * 210.00270 * 22 21 4 41 41 H 1.09001 * 109.47263 * 329.99843 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 5.2007 1.8017 1.4441 7 6 6.4161 2.6928 1.4448 8 8 6.9053 3.0520 0.3947 9 7 6.9595 3.0904 2.6123 10 6 8.1407 3.9570 2.6131 11 1 8.0849 4.6479 1.7717 12 6 9.4019 3.1002 2.4866 13 6 8.1905 4.7372 3.9014 14 1 7.4192 4.6015 4.6451 15 6 9.2202 5.6252 4.1302 16 7 10.1592 5.7908 3.2243 17 14 9.2815 6.5928 5.7268 18 1 10.4790 7.4712 5.7276 19 1 8.0572 7.4241 5.8492 20 1 9.3577 5.6519 6.8732 21 6 3.6142 -0.7154 -0.0048 22 6 4.8349 -1.5990 -0.0118 23 6 2.3271 -1.1330 0.0006 24 7 1.8681 -2.5403 0.0009 25 8 1.6801 -3.1198 -1.0538 26 8 1.6785 -3.1188 1.0559 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.5565 2.4334 -0.5122 31 1 5.6095 0.9983 -0.5125 32 1 5.4341 0.8690 1.9575 33 1 4.3812 2.3041 1.9579 34 1 6.5685 2.8028 3.4521 35 1 10.2807 3.7449 2.4866 36 1 9.4576 2.4093 3.3278 37 1 9.3658 2.5359 1.5547 38 1 10.8834 6.4158 3.3852 39 1 5.1322 -1.8162 1.0141 40 1 4.6060 -2.5309 -0.5288 41 1 5.6496 -1.0890 -0.5260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170683134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:48 Heat of formation + Delta-G solvation = 22.628102 kcal Electronic energy + Delta-G solvation = -25124.878145 eV Core-core repulsion = 21237.743487 eV Total energy + Delta-G solvation = -3887.134657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.73588 -41.61763 -39.24490 -36.63908 -35.58120 -34.86756 -33.29018 -32.57189 -31.64589 -29.46479 -29.00888 -27.83934 -25.97707 -25.37650 -23.93895 -21.43597 -21.21052 -20.40605 -19.64875 -18.96063 -18.90115 -17.69829 -17.20813 -16.51273 -16.13502 -15.63438 -15.42225 -15.25040 -14.54236 -14.34829 -13.98138 -13.90728 -13.49027 -13.26650 -13.16028 -12.97469 -12.74377 -12.55419 -12.31840 -11.90735 -11.82506 -11.79554 -11.47719 -11.30465 -11.20751 -11.15724 -11.05107 -10.88043 -10.45485 -10.34760 -9.91094 -9.67490 -9.30233 -9.19330 -8.67564 -8.13360 -6.23438 -4.33589 0.34703 0.89810 1.01789 1.64563 1.91079 3.05961 3.18335 3.24148 3.24929 3.62055 3.72371 3.91419 4.12768 4.27413 4.44826 4.45392 4.56897 4.80189 4.88450 5.01284 5.04505 5.08545 5.09427 5.18583 5.20351 5.35667 5.47158 5.53017 5.62221 6.07871 6.20508 6.67072 6.79529 6.84732 6.99151 7.24339 7.37465 7.44457 7.55504 7.75862 8.01382 8.43407 8.61372 8.87034 9.34115 10.82462 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.002449 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.846202 B =11431.909369 C =11658.501883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.125 3.875 3 N -0.262 5.262 4 N -0.341 5.341 5 C 0.144 3.856 6 C -0.162 4.162 7 C 0.508 3.492 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.264 3.736 11 H 0.050 0.950 12 C -0.147 4.147 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.285 1.285 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.164 3.836 22 C -0.114 4.114 23 C -0.194 4.194 24 N 0.053 4.947 25 O -0.143 6.143 26 O -0.140 6.140 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.391 0.609 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -13.561 -5.201 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 N -0.083 5.083 4 N -0.120 5.120 5 C 0.024 3.976 6 C -0.203 4.203 7 C 0.291 3.709 8 O -0.436 6.436 9 N -0.350 5.350 10 C 0.163 3.837 11 H 0.068 0.932 12 C -0.206 4.206 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.031 3.969 22 C -0.172 4.172 23 C -0.288 4.288 24 N 0.584 4.416 25 O -0.365 6.365 26 O -0.363 6.363 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.223 0.777 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.081 -11.010 -5.976 18.112 hybrid contribution -0.185 -0.754 1.361 1.567 sum -13.266 -11.764 -4.615 18.322 Atomic orbital electron populations 1.20406 0.85030 1.04619 1.04314 1.22152 0.97713 0.87069 0.97382 1.77693 0.85826 1.20357 1.24465 1.48766 1.06453 1.03189 1.53562 1.21815 0.82037 0.95407 0.98299 1.22058 0.99330 1.01924 0.96979 1.19946 0.84300 0.81473 0.85187 1.90696 1.63810 1.57828 1.31262 1.46553 1.31775 1.50007 1.06633 1.18797 0.79303 0.87361 0.98260 0.93224 1.22085 1.02580 0.99274 0.96651 1.21160 1.10104 1.23942 1.02468 0.92086 1.24889 0.95114 0.96495 0.97128 1.69882 1.12467 1.35633 1.34009 0.86484 0.77663 0.79803 0.83032 1.21030 1.20123 1.20102 1.20612 0.94955 0.86013 0.95355 1.20828 0.92814 0.98180 1.05367 1.20347 0.93874 0.82499 1.32077 1.42550 0.97639 1.01358 1.00050 1.94553 1.53783 1.67170 1.21005 1.94558 1.53643 1.67172 1.20947 0.89093 0.90222 0.88990 0.86413 0.86941 0.88705 0.88038 0.77686 0.88998 0.95392 0.96663 0.92385 0.88004 0.89082 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.44 36.00 0.38 -0.30 16 2 C 0.13 1.41 7.22 -82.41 -0.59 0.81 16 3 N -0.26 -3.23 12.58 33.67 0.42 -2.81 16 4 N -0.34 -3.80 3.61 -57.14 -0.21 -4.00 16 5 C 0.14 1.56 5.54 -4.04 -0.02 1.54 16 6 C -0.16 -1.87 6.02 -27.88 -0.17 -2.03 16 7 C 0.51 8.61 7.79 -10.98 -0.09 8.53 16 8 O -0.56 -11.48 15.65 5.56 0.09 -11.39 16 9 N -0.70 -13.18 5.07 -54.93 -0.28 -13.46 16 10 C 0.26 6.33 2.56 -69.09 -0.18 6.15 16 11 H 0.05 1.38 7.58 -51.92 -0.39 0.99 16 12 C -0.15 -3.45 9.26 37.16 0.34 -3.11 16 13 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -24.08 11.32 55.43 0.63 -23.45 16 17 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 C 0.16 1.72 6.93 -82.27 -0.57 1.15 16 22 C -0.11 -0.85 10.08 36.00 0.36 -0.48 16 23 C -0.19 -2.27 6.60 -80.37 -0.53 -2.80 16 24 N 0.05 0.66 4.41 33.75 0.15 0.80 16 25 O -0.14 -1.82 19.26 -29.46 -0.57 -2.39 16 26 O -0.14 -1.80 19.26 -29.46 -0.57 -2.37 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.12 1.38 8.10 -51.93 -0.42 0.96 16 31 H 0.11 1.09 7.00 -51.93 -0.36 0.72 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.39 6.29 8.54 -40.82 -0.35 5.94 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.59 7.08 -51.93 -0.37 0.22 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -30.94 362.17 -6.91 -37.85 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.55 Total: 3.63 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.46 Total: -2.87 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.71 Total: -42.92 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.05 Total: -16.15 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.94 -6.91 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170683134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.475 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds