Wall clock time and date at job start Tue Mar 31 2020 09:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90005 * 2 1 4 4 N 1.40085 * 108.20279 * 179.97438 * 3 2 1 5 5 C 1.46507 * 126.03394 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46925 * 90.01945 * 5 4 3 7 7 C 1.50709 * 109.46716 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99688 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99796 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99943 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.47078 * 34.99474 * 10 9 7 12 12 C 1.53000 * 109.47021 * 275.00054 * 10 9 7 13 13 C 1.50694 * 109.47115 * 154.99835 * 10 9 7 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.34946 * 107.92919 * 0.25841 * 4 3 2 22 22 C 1.50690 * 126.12906 * 179.73854 * 21 4 3 23 23 C 1.35317 * 107.74119 * 359.58374 * 21 4 3 24 24 N 1.48028 * 126.03883 * 180.16439 * 23 21 4 25 25 O 1.21802 * 119.99428 * 270.32919 * 24 23 21 26 26 O 1.21799 * 120.00017 * 90.32426 * 24 23 21 27 27 H 1.08995 * 109.47351 * 90.02325 * 1 2 3 28 28 H 1.08999 * 109.47435 * 210.02779 * 1 2 3 29 29 H 1.09003 * 109.47113 * 330.02482 * 1 2 3 30 30 H 1.09000 * 109.47091 * 330.01890 * 5 4 3 31 31 H 1.09000 * 109.46893 * 210.01836 * 5 4 3 32 32 H 1.08998 * 109.46869 * 60.00396 * 6 5 4 33 33 H 1.08995 * 109.47564 * 299.99996 * 6 5 4 34 34 H 0.96997 * 119.99849 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47131 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47106 * 299.99878 * 12 10 9 37 37 H 1.08998 * 109.47089 * 59.99825 * 12 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47671 * 90.00075 * 22 21 4 40 40 H 1.08997 * 109.47472 * 210.00270 * 22 21 4 41 41 H 1.09001 * 109.47263 * 329.99843 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 5.2007 1.8017 1.4441 7 6 6.4161 2.6928 1.4448 8 8 6.9053 3.0520 0.3947 9 7 6.9595 3.0904 2.6123 10 6 8.1407 3.9570 2.6131 11 1 8.0849 4.6479 1.7717 12 6 9.4019 3.1002 2.4866 13 6 8.1905 4.7372 3.9014 14 1 7.4192 4.6015 4.6451 15 6 9.2202 5.6252 4.1302 16 7 10.1592 5.7908 3.2243 17 14 9.2815 6.5928 5.7268 18 1 10.4790 7.4712 5.7276 19 1 8.0572 7.4241 5.8492 20 1 9.3577 5.6519 6.8732 21 6 3.6142 -0.7154 -0.0048 22 6 4.8349 -1.5990 -0.0118 23 6 2.3271 -1.1330 0.0006 24 7 1.8681 -2.5403 0.0009 25 8 1.6801 -3.1198 -1.0538 26 8 1.6785 -3.1188 1.0559 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.5565 2.4334 -0.5122 31 1 5.6095 0.9983 -0.5125 32 1 5.4341 0.8690 1.9575 33 1 4.3812 2.3041 1.9579 34 1 6.5685 2.8028 3.4521 35 1 10.2807 3.7449 2.4866 36 1 9.4576 2.4093 3.3278 37 1 9.3658 2.5359 1.5547 38 1 10.8834 6.4158 3.3852 39 1 5.1322 -1.8162 1.0141 40 1 4.6060 -2.5309 -0.5288 41 1 5.6496 -1.0890 -0.5260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170683134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:47 Heat of formation + Delta-G solvation = 3.381601 kcal Electronic energy + Delta-G solvation = -25125.712736 eV Core-core repulsion = 21237.743487 eV Total energy + Delta-G solvation = -3887.969248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60706 -42.51408 -40.69171 -37.59744 -36.95386 -36.13329 -34.38259 -34.06700 -32.62622 -30.92440 -29.89268 -28.78634 -27.35932 -26.86264 -24.96470 -22.88105 -22.23326 -21.31142 -21.13441 -19.90176 -19.77549 -19.08757 -18.27946 -17.76552 -17.31243 -16.89546 -16.80001 -16.53316 -15.93279 -15.33455 -14.92266 -14.67154 -14.55115 -14.44320 -14.26954 -14.01063 -13.75086 -13.65690 -13.42376 -13.18372 -12.98936 -12.88270 -12.80051 -12.75238 -12.68717 -12.37945 -12.29043 -12.27873 -12.18114 -12.04298 -11.13832 -10.94717 -10.66781 -10.60593 -10.44035 -9.80703 -8.20280 -6.37570 -0.62954 0.08053 0.13185 0.81400 1.05146 1.44032 1.44912 1.52843 1.70194 2.32243 2.55862 2.95317 3.01120 3.10628 3.37095 3.48381 3.70568 3.75795 3.92841 4.19800 4.27933 4.33798 4.34640 4.44732 4.48498 4.55276 4.70387 4.75078 4.78477 4.91456 4.91619 5.08022 5.22022 5.34995 5.41689 5.56985 5.66519 5.86741 6.01715 6.08587 6.46119 6.70142 6.87276 7.29173 7.47066 8.85442 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.002449 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.846202 B =11431.909369 C =11658.501883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.124 3.876 3 N -0.289 5.289 4 N -0.343 5.343 5 C 0.148 3.852 6 C -0.142 4.142 7 C 0.508 3.492 8 O -0.595 6.595 9 N -0.703 5.703 10 C 0.271 3.729 11 H 0.001 0.999 12 C -0.134 4.134 13 C -0.550 4.550 14 H 0.072 0.928 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.264 1.264 21 C 0.173 3.827 22 C -0.117 4.117 23 C -0.215 4.215 24 N 0.059 4.941 25 O -0.152 6.152 26 O -0.149 6.149 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.406 0.594 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 -14.563 -4.021 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 N -0.110 5.110 4 N -0.122 5.122 5 C 0.028 3.972 6 C -0.182 4.182 7 C 0.294 3.706 8 O -0.477 6.477 9 N -0.351 5.351 10 C 0.167 3.833 11 H 0.019 0.981 12 C -0.193 4.193 13 C -0.588 4.588 14 H 0.090 0.910 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.793 3.207 18 H -0.212 1.212 19 H -0.197 1.197 20 H -0.189 1.189 21 C 0.039 3.961 22 C -0.174 4.174 23 C -0.309 4.309 24 N 0.589 4.411 25 O -0.374 6.374 26 O -0.371 6.371 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.089 -12.045 -4.783 19.143 hybrid contribution 0.085 -0.464 0.927 1.041 sum -14.004 -12.510 -3.856 19.169 Atomic orbital electron populations 1.20547 0.83210 1.05338 1.05345 1.22642 0.98975 0.86640 0.96197 1.77673 0.86431 1.21071 1.25806 1.48691 1.06133 1.03414 1.53944 1.21742 0.82394 0.95284 0.97760 1.21896 0.96444 1.01854 0.98036 1.20742 0.85062 0.81014 0.83764 1.90684 1.65254 1.59189 1.32564 1.46283 1.30860 1.49744 1.08255 1.18344 0.81476 0.87513 0.95955 0.98096 1.21898 1.01333 0.98791 0.97302 1.21536 1.10228 1.24026 1.03031 0.90952 1.25759 0.94855 0.97564 1.00255 1.70032 1.13112 1.36354 1.35911 0.85447 0.77450 0.78424 0.79330 1.21249 1.19706 1.18907 1.21061 0.95570 0.85891 0.93604 1.21018 0.91944 0.97802 1.06652 1.20520 0.94690 0.82003 1.33727 1.42611 0.97189 1.01570 0.99751 1.94548 1.54145 1.67587 1.21127 1.94550 1.53930 1.67581 1.21060 0.87836 0.89900 0.87827 0.87623 0.85572 0.85644 0.87052 0.75863 0.91694 0.94056 0.96325 0.92524 0.86354 0.88863 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.44 71.24 0.74 -0.50 16 2 C 0.12 2.61 7.22 43.10 0.31 2.92 16 3 N -0.29 -6.70 12.58 -47.39 -0.60 -7.29 16 4 N -0.34 -6.98 3.61 -334.69 -1.21 -8.18 16 5 C 0.15 2.93 5.54 86.38 0.48 3.41 16 6 C -0.14 -2.91 6.02 29.85 0.18 -2.73 16 7 C 0.51 16.66 7.79 87.66 0.68 17.34 16 8 O -0.59 -24.59 15.65 -3.04 -0.05 -24.64 16 9 N -0.70 -25.66 5.07 -446.09 -2.26 -27.92 16 10 C 0.27 13.07 2.56 44.24 0.11 13.19 16 11 H 0.00 0.07 7.58 -2.38 -0.02 0.05 16 12 C -0.13 -6.34 9.26 71.98 0.67 -5.67 16 13 C -0.55 -27.76 8.73 25.60 0.22 -27.54 16 14 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.02 0.83 5.30 84.66 0.45 1.28 16 16 N -0.92 -50.87 11.32 21.45 0.24 -50.63 16 17 Si 0.97 40.66 29.54 68.60 2.03 42.68 16 18 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 C 0.17 3.24 6.93 41.40 0.29 3.53 16 22 C -0.12 -1.41 10.08 71.23 0.72 -0.69 16 23 C -0.22 -4.69 6.60 36.09 0.24 -4.45 16 24 N 0.06 1.38 4.41 -47.12 -0.21 1.17 16 25 O -0.15 -3.74 19.26 18.88 0.36 -3.38 16 26 O -0.15 -3.64 19.26 18.89 0.36 -3.27 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 31 H 0.13 2.16 7.00 -2.39 -0.02 2.14 16 32 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.41 12.25 8.54 -92.71 -0.79 11.46 16 35 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.02 7.08 -2.39 -0.02 1.00 16 Total: -1.00 -67.70 362.17 4.04 -63.66 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.28 Total: 17.72 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.09 Total: 0.09 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -4.03 Total: -92.85 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: 0.68 Total: -31.29 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -67.70 4.04 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170683134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.039 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds