Wall clock time and date at job start Tue Mar 31 2020 10:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47338 * 2 1 4 4 C 1.50694 * 109.47551 * 179.97438 * 3 2 1 5 5 N 1.35038 * 126.38752 * 264.99987 * 4 3 2 6 6 H 0.97001 * 124.88710 * 0.02668 * 5 4 3 7 7 N 1.28475 * 110.23133 * 179.71998 * 5 4 3 8 8 C 1.31809 * 110.07092 * 0.46416 * 7 5 4 9 9 C 1.47711 * 126.51867 * 179.81878 * 8 7 5 10 10 O 1.21562 * 119.99934 * 179.68610 * 9 8 7 11 11 N 1.34776 * 119.99811 * 359.68259 * 9 8 7 12 12 C 1.46502 * 120.00080 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46581 * 35.00344 * 12 11 9 14 14 C 1.50700 * 109.46969 * 154.99546 * 12 11 9 15 15 H 1.07998 * 120.00370 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99824 * 180.02562 * 14 12 11 17 17 N 1.31523 * 120.00027 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47111 * 119.99988 * 18 16 14 21 21 H 1.48503 * 109.46778 * 239.99962 * 18 16 14 22 22 C 1.52992 * 109.47005 * 275.00208 * 12 11 9 23 23 C 1.52997 * 109.47482 * 64.99872 * 22 12 11 24 24 C 1.35364 * 126.38570 * 84.99740 * 4 3 2 25 25 N 1.48008 * 127.24706 * 0.03970 * 24 4 3 26 26 O 1.21797 * 120.00148 * 269.97939 * 25 24 4 27 27 O 1.21799 * 119.99950 * 89.98247 * 25 24 4 28 28 H 1.08999 * 109.47353 * 299.99835 * 1 2 3 29 29 H 1.08996 * 109.46863 * 59.99961 * 1 2 3 30 30 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47463 * 239.99686 * 2 1 3 32 32 H 1.09009 * 109.47338 * 119.99663 * 2 1 3 33 33 H 1.09006 * 109.47136 * 59.99930 * 3 2 1 34 34 H 1.08999 * 109.47070 * 300.00370 * 3 2 1 35 35 H 0.97001 * 120.00217 * 359.97438 * 11 9 8 36 36 H 0.96993 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47103 * 304.99625 * 22 12 11 38 38 H 1.08998 * 109.46862 * 185.00437 * 22 12 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 23 22 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 23 22 12 41 41 H 1.09004 * 109.47261 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3476 1.5375 1.0839 6 1 4.0358 1.6173 1.9990 7 7 5.5817 1.5004 0.7288 8 6 5.6723 1.3915 -0.5816 9 6 6.9170 1.3220 -1.3739 10 8 6.8623 1.2160 -2.5837 11 7 8.1133 1.3761 -0.7556 12 6 9.3479 1.3078 -1.5414 13 1 9.2006 1.8164 -2.4941 14 6 10.4643 1.9770 -0.7820 15 1 10.2736 2.4096 0.1890 16 6 11.7294 2.0371 -1.3269 17 7 11.9617 1.5107 -2.5097 18 14 13.1136 2.8660 -0.3854 19 1 12.5958 3.3745 0.9101 20 1 14.1989 1.8840 -0.1342 21 1 13.6463 3.9990 -1.1841 22 6 9.7101 -0.1568 -1.7956 23 6 8.6358 -0.8031 -2.6725 24 6 4.3504 1.3474 -1.0846 25 7 3.9339 1.2241 -2.4995 26 8 3.7623 0.1226 -2.9901 27 8 3.7629 2.2242 -3.1733 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 8.1570 1.4611 0.2097 36 1 12.8516 1.5533 -2.8931 37 1 9.7702 -0.6865 -0.8449 38 1 10.6735 -0.2100 -2.3026 39 1 8.5757 -0.2734 -3.6233 40 1 7.6724 -0.7499 -2.1654 41 1 8.8942 -1.8464 -2.8540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183800038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:55 Heat of formation + Delta-G solvation = 18.053718 kcal Electronic energy + Delta-G solvation = -26263.660206 eV Core-core repulsion = 22376.327188 eV Total energy + Delta-G solvation = -3887.333018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.57200 -41.58057 -39.03627 -36.24989 -36.01774 -35.21611 -32.86981 -32.47072 -31.79803 -30.78628 -27.87069 -27.07044 -26.02727 -24.46011 -22.87019 -22.40081 -21.48994 -20.33199 -19.46783 -18.93719 -18.57215 -17.88436 -17.37354 -16.72676 -16.34055 -15.88486 -15.60279 -15.37413 -14.53871 -14.45590 -14.38075 -13.76930 -13.30286 -12.93451 -12.72404 -12.29627 -12.10667 -11.86358 -11.73703 -11.58269 -11.46148 -11.29257 -11.27045 -11.02720 -10.98802 -10.88318 -10.86071 -10.36668 -10.25176 -10.07596 -9.80038 -9.70394 -9.50189 -9.09488 -8.54929 -7.98002 -6.15446 -4.25304 0.74149 0.99347 1.27590 1.31358 2.33727 3.22468 3.29787 3.32446 3.43719 3.59608 3.88171 3.99109 4.22010 4.33785 4.37991 4.59167 4.73633 4.97764 5.02871 5.06221 5.16251 5.21758 5.47358 5.53256 5.62105 5.76069 6.22697 6.38354 6.44122 6.48401 6.63144 7.00776 7.07597 7.18565 7.24442 7.34243 7.56958 7.66969 7.82342 7.83564 8.11839 8.47842 8.66470 8.90874 9.41310 10.90088 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.003494 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.199993 B = 8011.706297 C = 8565.355892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.066 4.066 4 C 0.090 3.910 5 N -0.365 5.365 6 H 0.458 0.542 7 N -0.232 5.232 8 C 0.063 3.937 9 C 0.574 3.426 10 O -0.524 6.524 11 N -0.679 5.679 12 C 0.269 3.731 13 H 0.054 0.946 14 C -0.536 4.536 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.880 5.880 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.105 4.105 25 N 0.063 4.937 26 O -0.128 6.128 27 O -0.131 6.131 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.396 0.604 36 H 0.265 0.735 37 H 0.033 0.967 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.634 -1.590 10.010 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.105 4.105 4 C -0.040 4.040 5 N -0.079 5.079 6 H 0.305 0.695 7 N -0.066 5.066 8 C -0.101 4.101 9 C 0.354 3.646 10 O -0.400 6.400 11 N -0.327 5.327 12 C 0.168 3.832 13 H 0.072 0.928 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.517 5.517 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.166 4.166 23 C -0.196 4.196 24 C -0.199 4.199 25 N 0.596 4.404 26 O -0.353 6.353 27 O -0.355 6.355 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.230 0.770 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.534 -1.540 10.689 22.320 hybrid contribution 0.140 0.447 0.534 0.711 sum -19.394 -1.093 11.223 22.434 Atomic orbital electron populations 1.21749 0.94312 1.02567 1.02194 1.21603 0.96941 0.94121 1.03706 1.20566 0.84409 0.99946 1.05546 1.20852 0.95420 1.02034 0.85710 1.43149 1.02739 1.52386 1.09660 0.69468 1.73906 1.00603 1.18933 1.13167 1.22541 0.93847 1.04350 0.89391 1.16790 0.81780 0.79431 0.86572 1.90874 1.86119 1.50530 1.12461 1.46425 1.05795 1.69103 1.11333 1.18976 0.78288 0.93682 0.92284 0.92815 1.21220 0.93676 1.37831 1.04670 0.91886 1.24883 0.98562 0.95175 0.94982 1.69903 1.22196 1.43819 1.15816 0.86370 0.81646 0.79163 0.79796 1.19737 1.20814 1.20816 1.21950 1.00649 0.96169 0.97858 1.21849 0.98756 0.98197 1.00811 1.20508 0.94132 1.21603 0.83611 1.42044 0.97401 1.00359 1.00588 1.94546 1.53051 1.14059 1.73601 1.94557 1.53251 1.28522 1.59142 0.92466 0.92159 0.91861 0.90555 0.91269 0.88692 0.88471 0.77006 0.92485 0.94843 0.87925 0.92922 0.94614 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.07 -0.44 5.77 -27.89 -0.16 -0.60 16 4 C 0.09 0.94 6.48 -82.21 -0.53 0.41 16 5 N -0.37 -3.32 6.83 33.50 0.23 -3.09 16 6 H 0.46 1.89 8.96 -190.44 -1.71 0.19 16 7 N -0.23 -3.17 11.92 33.42 0.40 -2.78 16 8 C 0.06 1.10 7.13 -82.76 -0.59 0.51 16 9 C 0.57 12.32 6.39 -12.39 -0.08 12.24 16 10 O -0.52 -12.96 13.60 5.31 0.07 -12.88 16 11 N -0.68 -14.71 5.02 -55.92 -0.28 -14.99 16 12 C 0.27 6.82 2.24 -69.08 -0.15 6.67 16 13 H 0.05 1.57 7.58 -51.93 -0.39 1.18 16 14 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 17 N -0.88 -24.58 11.30 55.43 0.63 -23.95 16 18 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.13 -3.13 5.45 -26.74 -0.15 -3.28 16 23 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 24 C -0.11 -1.65 6.75 -79.73 -0.54 -2.19 16 25 N 0.06 1.11 3.94 34.07 0.13 1.25 16 26 O -0.13 -2.34 19.25 -29.46 -0.57 -2.90 16 27 O -0.13 -2.43 19.25 -29.46 -0.57 -3.00 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 7.69 8.26 -40.82 -0.34 7.36 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 39 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 40 H 0.03 0.81 5.64 -51.93 -0.29 0.52 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -32.97 354.12 -8.50 -41.47 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.79 Total: 3.23 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.07 Total: -3.24 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 1.11 Total: -43.56 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.06 Total: -18.79 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.97 -8.50 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183800038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.529 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds