Wall clock time and date at job start Tue Mar 31 2020 10:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47338 * 2 1 4 4 C 1.50694 * 109.47551 * 179.97438 * 3 2 1 5 5 N 1.35038 * 126.38752 * 264.99987 * 4 3 2 6 6 H 0.97001 * 124.88710 * 0.02668 * 5 4 3 7 7 N 1.28475 * 110.23133 * 179.71998 * 5 4 3 8 8 C 1.31809 * 110.07092 * 0.46416 * 7 5 4 9 9 C 1.47711 * 126.51867 * 179.81878 * 8 7 5 10 10 O 1.21562 * 119.99934 * 179.68610 * 9 8 7 11 11 N 1.34776 * 119.99811 * 359.68259 * 9 8 7 12 12 C 1.46502 * 120.00080 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46581 * 35.00344 * 12 11 9 14 14 C 1.50700 * 109.46969 * 154.99546 * 12 11 9 15 15 H 1.07998 * 120.00370 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99824 * 180.02562 * 14 12 11 17 17 N 1.31523 * 120.00027 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47111 * 119.99988 * 18 16 14 21 21 H 1.48503 * 109.46778 * 239.99962 * 18 16 14 22 22 C 1.52992 * 109.47005 * 275.00208 * 12 11 9 23 23 C 1.52997 * 109.47482 * 64.99872 * 22 12 11 24 24 C 1.35364 * 126.38570 * 84.99740 * 4 3 2 25 25 N 1.48008 * 127.24706 * 0.03970 * 24 4 3 26 26 O 1.21797 * 120.00148 * 269.97939 * 25 24 4 27 27 O 1.21799 * 119.99950 * 89.98247 * 25 24 4 28 28 H 1.08999 * 109.47353 * 299.99835 * 1 2 3 29 29 H 1.08996 * 109.46863 * 59.99961 * 1 2 3 30 30 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47463 * 239.99686 * 2 1 3 32 32 H 1.09009 * 109.47338 * 119.99663 * 2 1 3 33 33 H 1.09006 * 109.47136 * 59.99930 * 3 2 1 34 34 H 1.08999 * 109.47070 * 300.00370 * 3 2 1 35 35 H 0.97001 * 120.00217 * 359.97438 * 11 9 8 36 36 H 0.96993 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47103 * 304.99625 * 22 12 11 38 38 H 1.08998 * 109.46862 * 185.00437 * 22 12 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 23 22 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 23 22 12 41 41 H 1.09004 * 109.47261 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3476 1.5375 1.0839 6 1 4.0358 1.6173 1.9990 7 7 5.5817 1.5004 0.7288 8 6 5.6723 1.3915 -0.5816 9 6 6.9170 1.3220 -1.3739 10 8 6.8623 1.2160 -2.5837 11 7 8.1133 1.3761 -0.7556 12 6 9.3479 1.3078 -1.5414 13 1 9.2006 1.8164 -2.4941 14 6 10.4643 1.9770 -0.7820 15 1 10.2736 2.4096 0.1890 16 6 11.7294 2.0371 -1.3269 17 7 11.9617 1.5107 -2.5097 18 14 13.1136 2.8660 -0.3854 19 1 12.5958 3.3745 0.9101 20 1 14.1989 1.8840 -0.1342 21 1 13.6463 3.9990 -1.1841 22 6 9.7101 -0.1568 -1.7956 23 6 8.6358 -0.8031 -2.6725 24 6 4.3504 1.3474 -1.0846 25 7 3.9339 1.2241 -2.4995 26 8 3.7623 0.1226 -2.9901 27 8 3.7629 2.2242 -3.1733 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 8.1570 1.4611 0.2097 36 1 12.8516 1.5533 -2.8931 37 1 9.7702 -0.6865 -0.8449 38 1 10.6735 -0.2100 -2.3026 39 1 8.5757 -0.2734 -3.6233 40 1 7.6724 -0.7499 -2.1654 41 1 8.8942 -1.8464 -2.8540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183800038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:54 Heat of formation + Delta-G solvation = -4.642095 kcal Electronic energy + Delta-G solvation = -26264.644370 eV Core-core repulsion = 22376.327188 eV Total energy + Delta-G solvation = -3888.317182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.66564 -42.91908 -40.78859 -37.64181 -37.13819 -36.65004 -34.52429 -33.91554 -33.06921 -32.35188 -29.25434 -28.56190 -27.08262 -26.00454 -24.69857 -23.15862 -22.49247 -22.01996 -21.28577 -20.07225 -19.94160 -19.28349 -18.76491 -17.90014 -17.70258 -17.46000 -17.25212 -16.28002 -16.24810 -16.05516 -15.37348 -15.03857 -14.65103 -14.31372 -14.03155 -13.59735 -13.49069 -13.23677 -12.95981 -12.89440 -12.84874 -12.73702 -12.68087 -12.35728 -12.32722 -12.29947 -12.23035 -12.12670 -11.74048 -11.69258 -11.33015 -11.24820 -11.12130 -10.79362 -10.59456 -9.85834 -8.19704 -6.37842 -0.68071 -0.08899 0.04468 0.13791 1.38787 1.43525 1.44734 1.56585 1.97051 2.04120 2.41444 2.87579 2.98826 3.10088 3.24489 3.62750 3.85819 3.96831 4.03770 4.38123 4.42094 4.49073 4.55709 4.59542 4.67483 4.80964 4.97579 5.09837 5.12613 5.17432 5.18464 5.33934 5.36741 5.37680 5.45470 5.53815 5.69578 5.79292 6.08096 6.10091 6.38373 6.65015 6.69959 7.13499 7.35299 8.86332 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.003494 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.199993 B = 8011.706297 C = 8565.355892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.065 4.065 4 C 0.129 3.871 5 N -0.328 5.328 6 H 0.484 0.516 7 N -0.219 5.219 8 C 0.030 3.970 9 C 0.572 3.428 10 O -0.567 6.567 11 N -0.677 5.677 12 C 0.277 3.723 13 H 0.003 0.997 14 C -0.550 4.550 15 H 0.073 0.927 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.973 3.027 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.284 1.284 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.139 4.139 25 N 0.065 4.935 26 O -0.143 6.143 27 O -0.154 6.154 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.409 0.591 36 H 0.267 0.733 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.235 -1.278 13.711 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.104 4.104 4 C -0.002 4.002 5 N -0.047 5.047 6 H 0.338 0.662 7 N -0.054 5.054 8 C -0.133 4.133 9 C 0.355 3.645 10 O -0.445 6.445 11 N -0.324 5.324 12 C 0.175 3.825 13 H 0.021 0.979 14 C -0.588 4.588 15 H 0.091 0.909 16 C -0.183 4.183 17 N -0.551 5.551 18 Si 0.798 3.202 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.210 1.210 22 C -0.158 4.158 23 C -0.182 4.182 24 C -0.232 4.232 25 N 0.595 4.405 26 O -0.367 6.367 27 O -0.375 6.375 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.162 0.838 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.170 -1.214 14.442 25.656 hybrid contribution 0.526 0.341 -0.552 0.835 sum -20.644 -0.874 13.890 24.898 Atomic orbital electron populations 1.21736 0.92962 1.02885 1.02978 1.21596 0.98049 0.93608 1.03013 1.20863 0.81164 1.00640 1.07723 1.21327 0.96814 0.98072 0.83987 1.43260 1.01152 1.49540 1.10777 0.66152 1.73817 1.02705 1.17804 1.11084 1.21754 0.92526 1.08457 0.90595 1.17202 0.82835 0.77970 0.86448 1.90843 1.87043 1.52080 1.14556 1.46136 1.05123 1.69601 1.11587 1.18572 0.79747 0.93569 0.90646 0.97862 1.21528 0.94135 1.38080 1.05069 0.90935 1.25780 1.01107 0.95651 0.95770 1.70050 1.22817 1.44854 1.17375 0.85275 0.78309 0.77918 0.78701 1.18424 1.20223 1.20968 1.21794 0.99765 0.96048 0.98230 1.21685 0.98259 0.99079 0.99174 1.20658 0.94572 1.24978 0.83034 1.42296 0.96700 0.99869 1.01602 1.94520 1.53410 1.14250 1.74499 1.94533 1.54106 1.28595 1.60281 0.90296 0.92758 0.91869 0.93597 0.89732 0.83773 0.89039 0.75575 0.92398 0.93708 0.90304 0.95427 0.94692 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 3 C -0.07 -0.63 5.77 29.85 0.17 -0.46 16 4 C 0.13 2.32 6.48 41.40 0.27 2.59 16 5 N -0.33 -4.65 6.83 -47.93 -0.33 -4.97 16 6 H 0.48 1.31 8.96 -219.99 -1.97 -0.66 16 7 N -0.22 -5.45 11.92 -48.17 -0.57 -6.02 16 8 C 0.03 1.01 7.13 42.46 0.30 1.32 16 9 C 0.57 25.34 6.39 86.75 0.55 25.90 16 10 O -0.57 -29.60 13.60 -3.91 -0.05 -29.65 16 11 N -0.68 -29.93 5.02 -449.12 -2.25 -32.19 16 12 C 0.28 14.61 2.24 44.24 0.10 14.71 16 13 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 14 C -0.55 -29.41 8.73 25.60 0.22 -29.18 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 16 C 0.02 0.94 5.29 84.65 0.45 1.39 16 17 N -0.91 -52.38 11.30 21.45 0.24 -52.14 16 18 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 23 C -0.12 -5.93 8.51 71.98 0.61 -5.32 16 24 C -0.14 -4.27 6.75 36.52 0.25 -4.03 16 25 N 0.07 2.37 3.94 -46.13 -0.18 2.19 16 26 O -0.14 -5.42 19.25 18.89 0.36 -5.05 16 27 O -0.15 -5.96 19.25 18.89 0.36 -5.59 16 28 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.14 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.41 15.78 8.26 -92.71 -0.77 15.01 16 36 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.04 2.11 8.14 -2.39 -0.02 2.10 16 38 H 0.08 4.40 5.95 -2.39 -0.01 4.38 16 39 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 40 H 0.03 1.64 5.64 -2.39 -0.01 1.62 16 41 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -77.03 354.12 1.94 -75.09 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -1.65 Total: 14.60 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 3.99 Total: -0.38 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -3.09 Total: -93.13 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: 0.67 Total: -40.29 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -77.03 1.94 -75.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183800038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.447 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds