Wall clock time and date at job start Tue Mar 31 2020 10:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.35031 * 126.38573 * 300.02828 * 4 2 1 6 6 H 0.97001 * 124.88540 * 359.97438 * 5 4 2 7 7 N 1.28476 * 110.23328 * 179.97438 * 5 4 2 8 8 C 1.31812 * 110.07040 * 0.02562 * 7 5 4 9 9 C 1.47707 * 126.51878 * 180.02562 * 8 7 5 10 10 O 1.21568 * 119.99981 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99616 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99738 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47058 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47118 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47137 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99911 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00161 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47187 * 89.99877 * 19 17 15 21 21 H 1.48502 * 109.47134 * 210.00243 * 19 17 15 22 22 H 1.48500 * 109.46953 * 329.99591 * 19 17 15 23 23 C 1.35368 * 126.38421 * 119.71476 * 4 2 1 24 24 N 1.48007 * 127.24958 * 359.97438 * 23 4 2 25 25 O 1.21798 * 119.99332 * 90.00339 * 24 23 4 26 26 O 1.21795 * 120.00317 * 270.00624 * 24 23 4 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 0.96994 * 120.00185 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46649 * 299.99521 * 12 11 9 36 36 H 1.08997 * 109.47847 * 59.99241 * 12 11 9 37 37 H 1.09004 * 109.47231 * 299.99448 * 13 12 11 38 38 H 1.09003 * 109.47229 * 59.99559 * 13 12 11 39 39 H 1.09004 * 109.46937 * 300.00017 * 14 13 12 40 40 H 1.09003 * 109.47113 * 59.99878 * 14 13 12 41 41 H 0.96997 * 120.00046 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7866 -0.3637 2.5121 6 1 1.2496 0.3955 2.7882 7 7 2.3662 -1.1839 3.3133 8 6 3.0168 -2.1025 2.6275 9 6 3.8063 -3.2200 3.1840 10 8 4.3607 -4.0033 2.4377 11 7 3.9119 -3.3711 4.5191 12 6 4.6954 -4.4791 5.0711 13 6 4.6540 -4.4214 6.5994 14 6 5.4717 -5.5790 7.1758 15 6 5.4314 -5.5218 8.6812 16 1 4.8775 -4.7384 9.1772 17 6 6.1007 -6.4701 9.4253 18 7 6.0651 -6.4205 10.7391 19 14 7.0581 -7.8255 8.5675 20 1 8.4554 -7.3771 8.3407 21 1 7.0607 -9.0435 9.4170 22 1 6.4190 -8.1334 7.2629 23 6 2.8094 -1.8186 1.2568 24 7 3.3336 -2.5730 0.0963 25 8 4.4130 -2.2779 -0.3845 26 8 2.6855 -3.4889 -0.3777 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.4699 -2.7459 5.1145 35 1 4.2753 -5.4258 4.7313 36 1 5.7284 -4.3979 4.7326 37 1 5.0744 -3.4747 6.9388 38 1 3.6211 -4.5026 6.9381 39 1 5.0509 -6.5255 6.8364 40 1 6.5046 -5.4983 6.8371 41 1 6.5362 -7.0875 11.2625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269330295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:46 Heat of formation + Delta-G solvation = 14.789132 kcal Electronic energy + Delta-G solvation = -25101.665571 eV Core-core repulsion = 21214.190990 eV Total energy + Delta-G solvation = -3887.474581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.99134 -41.91490 -39.62087 -36.69793 -36.56997 -35.72964 -33.49121 -33.09881 -31.71698 -30.92728 -28.03639 -27.57708 -26.85089 -25.01951 -23.46132 -22.35544 -21.81332 -20.83701 -19.88854 -19.22381 -18.89162 -18.02372 -17.45090 -17.06777 -16.74995 -16.74653 -15.90473 -15.55090 -15.44223 -14.81356 -14.28250 -14.17821 -13.90953 -13.77895 -13.07687 -12.73922 -12.47447 -12.27729 -12.14318 -12.10009 -11.97781 -11.78559 -11.76795 -11.34672 -11.18469 -11.14737 -10.92380 -10.63390 -10.50057 -10.18101 -10.07580 -9.87930 -9.72154 -9.25198 -9.07450 -8.56709 -6.07570 -4.06614 0.40221 0.67522 0.78042 0.96612 1.96922 2.77847 2.89507 3.31376 3.39019 3.42631 3.43361 3.60449 3.77336 4.14045 4.27873 4.31168 4.43699 4.48030 4.73725 4.89231 4.95818 4.99553 5.13553 5.26465 5.32214 5.39677 5.45063 5.57298 5.86735 5.93493 6.14269 6.15035 6.37904 6.55104 6.71996 6.73990 7.19587 7.33044 7.36222 7.48954 7.73964 7.94310 8.48428 8.95857 9.54523 11.05562 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.002515 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.500402 B =11129.687736 C =11868.274169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C -0.151 4.151 4 C 0.103 3.897 5 N -0.359 5.359 6 H 0.460 0.540 7 N -0.225 5.225 8 C 0.054 3.946 9 C 0.587 3.413 10 O -0.520 6.520 11 N -0.700 5.700 12 C 0.112 3.888 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.103 4.103 24 N 0.058 4.942 25 O -0.125 6.125 26 O -0.126 6.126 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.015 0.985 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 19.035 -22.619 32.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.060 4.060 3 C -0.208 4.208 4 C -0.028 4.028 5 N -0.073 5.073 6 H 0.308 0.692 7 N -0.059 5.059 8 C -0.110 4.110 9 C 0.369 3.631 10 O -0.394 6.394 11 N -0.350 5.350 12 C -0.010 4.010 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.196 4.196 24 N 0.591 4.409 25 O -0.350 6.350 26 O -0.350 6.350 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.483 19.052 -21.224 31.547 hybrid contribution 0.335 -0.433 -0.743 0.923 sum -13.148 18.619 -21.967 31.656 Atomic orbital electron populations 1.21924 0.92019 1.03545 1.03340 1.20112 0.97576 0.96861 0.91491 1.21922 1.02450 0.93111 1.03339 1.20900 0.97992 0.94660 0.89209 1.43065 1.38058 1.23950 1.02228 0.69167 1.73874 1.09898 1.01641 1.20503 1.22022 1.02388 0.98499 0.88133 1.16749 0.80404 0.82565 0.83414 1.90908 1.46455 1.43176 1.58855 1.45981 1.52070 1.31662 1.05297 1.21844 0.95361 0.88095 0.95718 1.21727 1.01799 1.01573 0.90029 1.19510 0.94898 0.93402 0.97088 1.21074 1.32439 1.13496 0.89048 0.91000 1.25027 0.96062 0.97654 0.94729 1.69910 1.43425 1.35951 1.04864 0.86775 0.80736 0.81729 0.80071 1.20208 1.21344 1.18842 1.20479 1.11209 1.00251 0.87679 1.42096 0.99984 0.99479 0.99296 1.94574 1.07548 1.71410 1.61456 1.94573 1.58523 1.20008 1.61895 0.92108 0.91307 0.90283 0.88223 0.91307 0.90286 0.92110 0.75667 0.91058 0.91069 0.91914 0.91894 0.96184 0.96621 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.18 37.16 0.34 -0.10 16 2 C -0.04 -0.19 3.34 -91.78 -0.31 -0.50 16 3 C -0.15 -0.44 9.18 37.16 0.34 -0.10 16 4 C 0.10 0.79 5.74 -82.21 -0.47 0.32 16 5 N -0.36 -2.19 6.83 33.50 0.23 -1.96 16 6 H 0.46 0.82 8.96 -190.43 -1.71 -0.89 16 7 N -0.22 -2.19 11.92 33.42 0.40 -1.79 16 8 C 0.05 0.70 7.13 -82.76 -0.59 0.11 16 9 C 0.59 9.34 7.82 -12.39 -0.10 9.25 16 10 O -0.52 -10.15 16.47 5.31 0.09 -10.06 16 11 N -0.70 -10.17 5.55 -61.30 -0.34 -10.51 16 12 C 0.11 1.86 5.67 -4.04 -0.02 1.84 16 13 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 19 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.10 -1.27 6.75 -79.73 -0.54 -1.80 16 24 N 0.06 0.85 3.76 34.07 0.13 0.97 16 25 O -0.13 -1.93 19.25 -29.46 -0.57 -2.50 16 26 O -0.13 -1.94 19.25 -29.46 -0.57 -2.50 16 27 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.41 5.00 8.20 -40.82 -0.33 4.67 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 40 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -35.79 362.07 -8.13 -43.92 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -7.04 Total: -4.42 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.03 Total: -6.77 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 1.19 Total: -40.22 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.05 Total: -15.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.79 -8.13 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269330295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.710 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds