Wall clock time and date at job start Tue Mar 31 2020 10:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.35031 * 126.38573 * 300.02828 * 4 2 1 6 6 H 0.97001 * 124.88540 * 359.97438 * 5 4 2 7 7 N 1.28476 * 110.23328 * 179.97438 * 5 4 2 8 8 C 1.31812 * 110.07040 * 0.02562 * 7 5 4 9 9 C 1.47707 * 126.51878 * 180.02562 * 8 7 5 10 10 O 1.21568 * 119.99981 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99616 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99738 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47058 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47118 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47137 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99911 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00161 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47187 * 89.99877 * 19 17 15 21 21 H 1.48502 * 109.47134 * 210.00243 * 19 17 15 22 22 H 1.48500 * 109.46953 * 329.99591 * 19 17 15 23 23 C 1.35368 * 126.38421 * 119.71476 * 4 2 1 24 24 N 1.48007 * 127.24958 * 359.97438 * 23 4 2 25 25 O 1.21798 * 119.99332 * 90.00339 * 24 23 4 26 26 O 1.21795 * 120.00317 * 270.00624 * 24 23 4 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 0.96994 * 120.00185 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46649 * 299.99521 * 12 11 9 36 36 H 1.08997 * 109.47847 * 59.99241 * 12 11 9 37 37 H 1.09004 * 109.47231 * 299.99448 * 13 12 11 38 38 H 1.09003 * 109.47229 * 59.99559 * 13 12 11 39 39 H 1.09004 * 109.46937 * 300.00017 * 14 13 12 40 40 H 1.09003 * 109.47113 * 59.99878 * 14 13 12 41 41 H 0.96997 * 120.00046 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7866 -0.3637 2.5121 6 1 1.2496 0.3955 2.7882 7 7 2.3662 -1.1839 3.3133 8 6 3.0168 -2.1025 2.6275 9 6 3.8063 -3.2200 3.1840 10 8 4.3607 -4.0033 2.4377 11 7 3.9119 -3.3711 4.5191 12 6 4.6954 -4.4791 5.0711 13 6 4.6540 -4.4214 6.5994 14 6 5.4717 -5.5790 7.1758 15 6 5.4314 -5.5218 8.6812 16 1 4.8775 -4.7384 9.1772 17 6 6.1007 -6.4701 9.4253 18 7 6.0651 -6.4205 10.7391 19 14 7.0581 -7.8255 8.5675 20 1 8.4554 -7.3771 8.3407 21 1 7.0607 -9.0435 9.4170 22 1 6.4190 -8.1334 7.2629 23 6 2.8094 -1.8186 1.2568 24 7 3.3336 -2.5730 0.0963 25 8 4.4130 -2.2779 -0.3845 26 8 2.6855 -3.4889 -0.3777 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.4699 -2.7459 5.1145 35 1 4.2753 -5.4258 4.7313 36 1 5.7284 -4.3979 4.7326 37 1 5.0744 -3.4747 6.9388 38 1 3.6211 -4.5026 6.9381 39 1 5.0509 -6.5255 6.8364 40 1 6.5046 -5.4983 6.8371 41 1 6.5362 -7.0875 11.2625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269330295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:46 Heat of formation + Delta-G solvation = -10.807551 kcal Electronic energy + Delta-G solvation = -25102.775526 eV Core-core repulsion = 21214.190990 eV Total energy + Delta-G solvation = -3888.584536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.79209 -42.99103 -40.88030 -37.70332 -37.20518 -37.13592 -35.28097 -34.07372 -33.38602 -31.84388 -29.21910 -28.23218 -27.87904 -26.20648 -24.53152 -23.53477 -22.66645 -22.34052 -21.18855 -20.05376 -20.00391 -19.06964 -18.86380 -18.36480 -17.85739 -17.59251 -17.18570 -16.71278 -16.26240 -16.15852 -15.52688 -15.37049 -14.97300 -14.78937 -14.28212 -13.86712 -13.73908 -13.20401 -13.19332 -12.93164 -12.79650 -12.74995 -12.69721 -12.45502 -12.39949 -12.36574 -12.14060 -12.12251 -11.83573 -11.63992 -11.53945 -11.38111 -11.34837 -10.91677 -10.76844 -10.35250 -8.30106 -6.33992 -0.75584 -0.23831 -0.02148 0.05201 1.25675 1.36832 1.38635 1.50135 1.72264 1.72659 2.35797 2.71008 2.81542 3.05756 3.10442 3.46808 3.79964 3.85355 3.89371 4.01104 4.12940 4.14902 4.43401 4.61982 4.72798 4.76689 4.78367 4.82373 4.90612 5.00069 5.04029 5.12348 5.15270 5.20958 5.34008 5.43647 5.52592 5.63449 5.93819 6.22727 6.26146 6.31109 6.73751 6.76802 7.30838 8.86176 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.002515 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.500402 B =11129.687736 C =11868.274169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.328 5.328 6 H 0.483 0.517 7 N -0.210 5.210 8 C 0.027 3.973 9 C 0.586 3.414 10 O -0.564 6.564 11 N -0.689 5.689 12 C 0.123 3.877 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.530 4.530 16 H 0.039 0.961 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.248 1.248 23 C -0.136 4.136 24 N 0.060 4.940 25 O -0.146 6.146 26 O -0.145 6.145 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.420 0.580 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.021 0.979 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 20.888 -23.852 34.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 C -0.207 4.207 4 C 0.003 3.997 5 N -0.046 5.046 6 H 0.337 0.663 7 N -0.045 5.045 8 C -0.136 4.136 9 C 0.370 3.630 10 O -0.441 6.441 11 N -0.340 5.340 12 C 0.001 3.999 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.057 0.943 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.171 1.171 23 C -0.230 4.230 24 N 0.591 4.409 25 O -0.368 6.368 26 O -0.368 6.368 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.804 20.954 -22.452 34.093 hybrid contribution 0.625 -0.852 -0.305 1.100 sum -14.179 20.102 -22.757 33.512 Atomic orbital electron populations 1.21966 0.90051 1.03239 1.05410 1.20301 0.99004 0.97533 0.89159 1.21964 1.01560 0.91727 1.05407 1.21305 0.95306 0.92617 0.90522 1.43158 1.36649 1.23487 1.01335 0.66323 1.73816 1.09125 1.01129 1.20475 1.21537 1.04274 0.99208 0.88555 1.17048 0.79984 0.82788 0.83204 1.90877 1.48410 1.45052 1.59806 1.45769 1.51636 1.31262 1.05299 1.21532 0.95534 0.88700 0.94183 1.21492 1.01223 0.99927 0.91124 1.19473 0.96128 0.95423 0.94028 1.21439 1.31351 1.12311 0.91686 0.94308 1.25969 0.97388 1.00487 0.95348 1.70053 1.45005 1.37346 1.06631 0.85715 0.79473 0.78389 0.79451 1.19265 1.21048 1.17123 1.20619 1.13850 1.02150 0.86369 1.42356 0.99608 0.99267 0.99698 1.94547 1.08183 1.71653 1.62432 1.94546 1.58552 1.20850 1.62858 0.89762 0.92793 0.88624 0.89786 0.92780 0.88629 0.89766 0.74217 0.91508 0.91437 0.91413 0.91442 0.95931 0.96040 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.18 71.98 0.66 0.28 16 2 C -0.04 -0.28 3.34 -11.54 -0.04 -0.32 16 3 C -0.15 -0.38 9.18 71.98 0.66 0.28 16 4 C 0.13 1.76 5.74 41.40 0.24 2.00 16 5 N -0.33 -2.92 6.83 -47.93 -0.33 -3.25 16 6 H 0.48 -0.50 8.96 -219.99 -1.97 -2.48 16 7 N -0.21 -3.59 11.92 -48.17 -0.57 -4.17 16 8 C 0.03 0.68 7.13 42.46 0.30 0.99 16 9 C 0.59 18.57 7.82 86.75 0.68 19.25 16 10 O -0.56 -22.49 16.47 -3.93 -0.06 -22.55 16 11 N -0.69 -19.39 5.55 -466.11 -2.59 -21.98 16 12 C 0.12 3.99 5.67 86.38 0.49 4.48 16 13 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 15 C -0.53 -30.00 9.66 25.60 0.25 -29.76 16 16 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 17 C 0.01 0.29 5.47 84.65 0.46 0.76 16 18 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 19 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 23 C -0.14 -3.28 6.75 36.52 0.25 -3.03 16 24 N 0.06 1.81 3.76 -46.13 -0.17 1.64 16 25 O -0.15 -4.65 19.25 18.89 0.36 -4.29 16 26 O -0.15 -4.65 19.25 18.89 0.36 -4.29 16 27 H 0.08 -0.17 8.14 -2.39 -0.02 -0.18 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.08 0.91 7.95 -2.39 -0.02 0.89 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.42 9.65 8.20 -92.71 -0.76 8.89 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 40 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.63 362.07 1.70 -78.92 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.71 Total: 1.49 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.23 Total: -8.95 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -3.36 Total: -86.80 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: 0.66 Total: -31.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -80.63 1.70 -78.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269330295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.115 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds