Wall clock time and date at job start Tue Mar 31 2020 11:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99889 * 2 1 4 4 N 1.46903 * 109.46952 * 125.44908 * 3 2 1 5 5 C 1.46903 * 111.00264 * 304.57298 * 4 3 2 6 6 C 1.50693 * 109.47119 * 285.85691 * 5 4 3 7 7 H 1.08002 * 120.00124 * 355.30018 * 6 5 4 8 8 C 1.37877 * 119.99909 * 175.29576 * 6 5 4 9 9 N 1.31515 * 120.00074 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00033 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47501 * 89.99681 * 10 8 6 12 12 H 1.48498 * 109.47366 * 209.99619 * 10 8 6 13 13 H 1.48497 * 109.47390 * 329.99454 * 10 8 6 14 14 C 1.46908 * 110.99978 * 68.52893 * 4 3 2 15 15 C 1.50698 * 109.46898 * 66.04317 * 14 4 3 16 16 C 1.38319 * 120.83401 * 83.72525 * 15 14 4 17 17 Cl 1.73595 * 120.42168 * 359.97438 * 16 15 14 18 18 N 1.32667 * 119.16563 * 180.02562 * 16 15 14 19 19 C 1.31792 * 120.98293 * 359.97438 * 18 16 15 20 20 N 1.31745 * 121.84774 * 359.97438 * 19 18 16 21 21 C 1.33036 * 120.71970 * 359.71632 * 20 19 18 22 22 N 1.38563 * 120.51992 * 180.28291 * 21 20 19 23 23 C 1.46899 * 111.00264 * 328.56749 * 22 21 20 24 24 C 1.46908 * 110.99849 * 92.51738 * 22 21 20 25 25 H 1.08001 * 119.99958 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00208 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99937 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47221 * 5.45153 * 3 2 1 29 29 H 1.08995 * 109.47289 * 245.44776 * 3 2 1 30 30 H 1.09002 * 109.46424 * 45.85495 * 5 4 3 31 31 H 1.08992 * 109.47250 * 165.85173 * 5 4 3 32 32 H 0.97001 * 119.99960 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46740 * 186.04619 * 14 4 3 34 34 H 1.09000 * 109.46685 * 306.04487 * 14 4 3 35 35 H 1.07993 * 119.07164 * 179.97438 * 19 18 16 36 36 H 1.09000 * 109.47345 * 59.99415 * 23 22 21 37 37 H 1.08996 * 109.47469 * 180.02562 * 23 22 21 38 38 H 1.09007 * 109.46304 * 299.99779 * 23 22 21 39 39 H 1.08999 * 109.47038 * 64.27908 * 24 22 21 40 40 H 1.09000 * 109.47270 * 184.28098 * 24 22 21 41 41 H 1.09004 * 109.46982 * 304.27887 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0039 1.3275 1.1283 5 6 2.3078 1.0848 2.3989 6 6 1.5278 2.3144 2.7872 7 1 1.6071 3.2137 2.1944 8 6 0.7129 2.2912 3.8991 9 7 0.0326 3.3644 4.2382 10 14 0.5762 0.7360 4.9247 11 1 1.6107 0.7529 5.9900 12 1 -0.7715 0.6686 5.5445 13 1 0.7808 -0.4501 4.0549 14 6 4.0888 0.3573 0.9287 15 6 4.9303 0.7797 -0.2480 16 6 5.9435 1.7092 -0.0977 17 17 6.2680 2.4123 1.4560 18 7 6.6635 2.0575 -1.1561 19 6 6.4265 1.5313 -2.3410 20 7 5.4724 0.6423 -2.5285 21 6 4.7117 0.2377 -1.5149 22 7 3.7132 -0.7018 -1.7157 23 6 3.1481 -0.5890 -3.0669 24 6 4.2113 -2.0610 -1.4653 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3591 2.1313 0.0976 29 1 2.6149 1.4063 -0.9347 30 1 1.6252 0.2428 2.2841 31 1 3.0379 0.8574 3.1756 32 1 -0.5404 3.3482 5.0207 33 1 4.7097 0.3173 1.8238 34 1 3.6642 -0.6281 0.7367 35 1 7.0313 1.8374 -3.1816 36 1 3.9342 -0.7513 -3.8043 37 1 2.3666 -1.3374 -3.1976 38 1 2.7238 0.4061 -3.2011 39 1 4.4892 -2.1585 -0.4158 40 1 3.4307 -2.7836 -1.7031 41 1 5.0837 -2.2493 -2.0912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292074438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:26 Heat of formation + Delta-G solvation = 100.419153 kcal Electronic energy + Delta-G solvation = -24597.041266 eV Core-core repulsion = 21153.989046 eV Total energy + Delta-G solvation = -3443.052220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44418 -37.97090 -37.37131 -36.49094 -33.28078 -32.77861 -32.64061 -31.26634 -28.09659 -27.87953 -26.61892 -25.63626 -24.40551 -22.26362 -22.12096 -20.75578 -18.80132 -18.19229 -17.77736 -16.68326 -16.01346 -15.46978 -15.09668 -14.81268 -14.64030 -14.40432 -14.28767 -14.00509 -13.92198 -13.71420 -12.67716 -12.59156 -12.41852 -12.30056 -12.10735 -11.96399 -11.72678 -11.46907 -11.33254 -11.04307 -10.75797 -10.63996 -10.47421 -10.42009 -10.28496 -9.87202 -9.54143 -9.38549 -9.29954 -8.76420 -8.61232 -8.49520 -7.32984 -5.99255 -3.95054 0.76572 0.78564 1.79209 2.95387 3.27563 3.30856 3.38516 3.39895 3.52511 4.01439 4.28766 4.46456 4.64704 4.78693 4.99136 5.06674 5.07282 5.24028 5.30916 5.33893 5.46530 5.51863 5.60382 5.72548 5.82083 5.86650 6.01805 6.02780 6.17711 6.35783 6.48846 6.67811 6.76394 6.85453 6.86118 7.03618 7.25215 7.40898 7.65860 7.87125 7.92526 8.03650 8.71556 9.11699 9.63143 11.14198 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.005708 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.729102 B = 4904.633695 C = 6123.177465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.097 3.903 4 N -0.509 5.509 5 C 0.161 3.839 6 C -0.497 4.497 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.869 3.131 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.096 3.904 15 C -0.138 4.138 16 C 0.238 3.762 17 Cl 0.009 6.991 18 N -0.526 5.526 19 C 0.318 3.682 20 N -0.553 5.553 21 C 0.359 3.641 22 N -0.479 5.479 23 C 0.032 3.968 24 C 0.028 3.972 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.004 0.996 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.201 0.799 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -10.578 -13.561 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.176 4.176 3 C -0.030 4.030 4 N -0.231 5.231 5 C 0.035 3.965 6 C -0.536 4.536 7 H 0.097 0.903 8 C -0.132 4.132 9 N -0.542 5.542 10 Si 0.696 3.304 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 C -0.033 4.033 15 C -0.146 4.146 16 C 0.067 3.933 17 Cl 0.038 6.962 18 N -0.244 5.244 19 C 0.029 3.971 20 N -0.272 5.272 21 C 0.120 3.880 22 N -0.200 5.200 23 C -0.115 4.115 24 C -0.118 4.118 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.217 0.783 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.602 -9.622 -13.657 19.786 hybrid contribution -0.432 -1.808 0.860 2.048 sum 10.170 -11.429 -12.798 19.946 Atomic orbital electron populations 1.23684 0.96191 1.00936 1.02586 1.23441 0.96119 0.99829 0.98214 1.21170 0.94172 0.94649 0.93056 1.62313 1.10586 1.46555 1.03610 1.20250 0.93060 0.97437 0.85745 1.20959 1.23822 0.97854 1.10921 0.90256 1.24849 0.95408 0.95701 0.97205 1.69892 1.29398 1.28132 1.26753 0.86960 0.77502 0.84900 0.81026 1.20339 1.21364 1.19094 1.20922 0.93677 0.95440 0.93295 1.21077 0.97968 0.98125 0.97383 1.21890 0.90933 0.90843 0.89641 1.98462 1.94535 1.82306 1.20936 1.67886 1.29347 1.27697 0.99440 1.24621 0.91440 0.88085 0.92996 1.68430 1.07062 1.16207 1.35498 1.19908 0.87768 0.92142 0.88155 1.59701 1.26751 1.03780 1.29745 1.22341 0.99173 1.03342 0.86678 1.22497 0.99945 0.86950 1.02432 0.89970 0.88638 0.87976 0.90043 0.92342 0.97863 0.96334 0.92821 0.89996 0.92875 0.78276 0.93221 0.90628 0.91033 0.90563 0.89726 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.31 14.32 29.01 0.42 -2.89 16 2 C -0.16 -2.64 6.49 -36.03 -0.23 -2.88 16 3 C 0.10 1.82 5.18 -4.98 -0.03 1.79 16 4 N -0.51 -10.14 4.63 -238.96 -1.11 -11.25 16 5 C 0.16 3.74 3.67 -4.98 -0.02 3.72 16 6 C -0.50 -13.82 9.22 -34.44 -0.32 -14.14 16 7 H 0.08 2.44 8.01 -52.49 -0.42 2.02 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.33 27.56 -169.99 -4.69 16.65 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.26 6.41 56.52 0.36 -5.90 16 14 C 0.10 1.57 4.36 -4.97 -0.02 1.55 16 15 C -0.14 -2.09 4.73 -104.12 -0.49 -2.58 16 16 C 0.24 3.71 7.32 -17.16 -0.13 3.59 16 17 Cl 0.01 0.14 27.76 -51.86 -1.44 -1.30 16 18 N -0.53 -7.60 10.43 -11.76 -0.12 -7.73 16 19 C 0.32 3.85 12.28 -92.20 -1.13 2.72 16 20 N -0.55 -7.08 9.16 -13.83 -0.13 -7.20 16 21 C 0.36 4.83 4.56 -154.76 -0.71 4.13 16 22 N -0.48 -5.57 1.82 -188.80 -0.34 -5.91 16 23 C 0.03 0.32 9.11 60.06 0.55 0.87 16 24 C 0.03 0.26 9.25 60.07 0.56 0.81 16 25 H 0.08 1.23 8.06 -52.49 -0.42 0.81 16 26 H 0.10 1.71 7.84 -52.49 -0.41 1.30 16 27 H 0.10 1.60 6.27 -52.49 -0.33 1.27 16 28 H 0.08 1.74 7.32 -51.93 -0.38 1.36 16 29 H 0.06 1.03 5.68 -51.93 -0.29 0.74 16 30 H 0.00 0.09 5.21 -51.93 -0.27 -0.18 16 31 H 0.02 0.44 7.43 -51.93 -0.39 0.05 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 33 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 34 H 0.05 0.82 4.55 -51.93 -0.24 0.58 16 35 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.05 0.49 7.60 -51.93 -0.39 0.10 16 37 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.72 7.18 -51.93 -0.37 0.34 16 40 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 41 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -31.06 342.80 -9.10 -40.16 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.56 Total: -0.38 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.65 Total: -1.41 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.93 Total: -58.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.69 Total: 16.65 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.44 Total: -1.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.06 -9.10 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292074438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.576 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds